TCONS_00071960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071960
Unique NameTCONS_00071960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071960 ID=TCONS_00071960|Name=TCONS_00071960|organism=Clytia hemisphaerica|type=transcript|length=402bp
TGTATACAATCTTTGGTTCACTAAACGAAAAACAACGTCTATTCTTCGTA
TTTTCATTCTAAAGTTAGGGCGGAAAATTGTTCGCGTTAAAACGCGAATC
GCCCATTTGCGCCCCAAGTTGAAGGCGTTGTTAAGTGATTGATACGGGAC
CGAGAAATGGAAAGAAGTTAattattgaataattaaaaaagagGCTTGTT
AGTGTTCATAGTAGCTAGGAATAAATGTTCGAATGTTAATAGTCACTCAT
TGTTCATGTGAATACAATGTCTTTGCATATTTTGTATAGTGATAATTTAG
GAGTTTATATATGTATGTATTATTTTCCAGAAGAAAATAGTGGGAAGGGT
AAGGCTACAAACACCTTACAACAAGATAAGAACATTTATTAAAGTAACGG
AC
Run BLAST on NCBI

transcript from alignment at scaffold_65:66687..67088

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071960 ID=TCONS_00071960|Name=TCONS_00071960|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at scaffold_65:66687..67088 (Clytia hemisphaerica)
GTCCGTTACTTTAATAAATGTTCTTATCTTGTTGTAAGGTGTTTGTAGCC
TTACCCTTCCCACTATTTTCTTCTGGAAAATAATACATACATATATAAAC
TCCTAAATTATCACTATACAAAATATGCAAAGACATTGTATTCACATGAA
CAATGAGTGACTATTAACATTCGAACATTTATTCCTAGCTACTATGAACA
CTAACAAGCctcttttttaattattcaataatTAACTTCTTTCCATTTCT
CGGTCCCGTATCAATCACTTAACAACGCCTTCAACTTGGGGCGCAAATGG
GCGATTCGCGTTTTAACGCGAACAATTTTCCGCCCTAACTTTAGAATGAA
AATACGAAGAATAGACGTTGTTTTTCGTTTAGTGAACCAAAGATTGTATA
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044676XLOC_044676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071960-exon-scaffold_65-1491911889:66687..67088TCONS_00071960-exon-scaffold_65-1491911889:66687..67088Clytia hemisphaericaexon
TCONS_00071960-exon-scaffold_65-1510915933:66687..67088TCONS_00071960-exon-scaffold_65-1510915933:66687..67088Clytia hemisphaericaexon
TCONS_00071960-exon-scaffold_65-1575043694:66687..67088TCONS_00071960-exon-scaffold_65-1575043694:66687..67088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:66687..67088 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.250403	0	0	0.267657	0.20499	0.26039	0.957092	0	0.660249	0	0.167295	0	0	0.246027	0	0	0	0	0	0.649136	0	0.290021	0	0	0	0.300321	0	0	0.235365
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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