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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071959 ID=TCONS_00071959|Name=TCONS_00071959|organism=Clytia hemisphaerica|type=transcript|length=921bp
NCTCGAATACTGCCTCTGTTCTTGAAATTAGCTCTTCTTCAGTTCTGCCG
CCAATAATAATGTCATCTGAAATGTTTTTAACTCCTGGGAGACCAGTGAG
TGCTAATTCAATTTCACGTTGGTAGATCTCCGCTGCAGATGACATTCCGA
AAAGAAGGCGAGTGTACCGAAATATACCACGATAAGTAGCAAATGCTGTA
AGTTCTCTGCTCGCTTTATCTAGTTCGATTTGATGATAACCTTCGTTTAG
ATCAAGTTTGGTGAACAGTTTACACCCGTTGAATTCGTGCAATAATTCAT
CAAGAGTTGGGATTTGATATGGTTCCCGTATGATAGCAGTGTTAGCAGCT
CTCATGTCCACACACAAACGTATATTGCTAGAGTTCGGCTTTGGGACAGG
TACGATTGGATTGACCCATGATGGTGGATCTGATACTGGTTCAATTACAC
CTAACTCGAGAAGACGATCTAGTTCTGTGTCCACTTCCTTTCGCATTAAT
ATTGGAAGCCGTCGAGGTTTCTGTGCAACTGGTTGAATAGATGGGTCAGT
CTTAATGTTCAATGAAACACCTTTTAATTTACCCAAGCCTTGAAATCGAT
CACTATATTCGGTAATAATGTCATTCATCTTTGAAGAGTTAGCAGTAATG
TTATTAACTCTTTCTGTAGTGGTAGTTGTTGCAACTGGATCAGGTCCGAC
ACGAAGTAGGTTCAATTCAATTGACGAGTCATATCCAAGGATAGTAACAG
ATGGGTGAGGATTGATGATAAATCGGGCATTTATTTCAGAGTTCCCTGCC
CTGATTTTTACATAACAACATTCTTCAAATGGAATTGGAGCATTAAACGA
TTTAGCTTGCCCCTTGTATGGAAGACGTTTGGGTTCAAAGTTCATTTTGG
TTAGAGTTTCTTGACTGATAA Run BLAST on NCBI protein sequence of TCONS_00071959-protein >TCONS_00071959-protein ID=TCONS_00071959-protein|Name=TCONS_00071959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
ISQETLTKMNFEPKRLPYKGQAKSFNAPIPFEECCYVKIRAGNSEINARF
IINPHPSVTILGYDSSIELNLLRVGPDPVATTTTTERVNNITANSSKMND
IITEYSDRFQGLGKLKGVSLNIKTDPSIQPVAQKPRRLPILMRKEVDTEL
DRLLELGVIEPVSDPPSWVNPIVPVPKPNSSNIRLCVDMRAANTAIIREP
YQIPTLDELLHEFNGCKLFTKLDLNEGYHQIELDKASRELTAFATYRGIF
RYTRLLFGMSSAAEIYQREIELALTGLPGVKNISDDIIIGGRTEEELISR
TEAVFE Run BLAST on NCBI transcript from alignment at scaffold_65:10937..11857 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071959 ID=TCONS_00071959|Name=TCONS_00071959|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at scaffold_65:10937..11857 (Clytia hemisphaerica)
TTATCAGTCAAGAAACTCTAACCAAAATGAACTTTGAACCCAAACGTCTT
CCATACAAGGGGCAAGCTAAATCGTTTAATGCTCCAATTCCATTTGAAGA
ATGTTGTTATGTAAAAATCAGGGCAGGGAACTCTGAAATAAATGCCCGAT
TTATCATCAATCCTCACCCATCTGTTACTATCCTTGGATATGACTCGTCA
ATTGAATTGAACCTACTTCGTGTCGGACCTGATCCAGTTGCAACAACTAC
CACTACAGAAAGAGTTAATAACATTACTGCTAACTCTTCAAAGATGAATG
ACATTATTACCGAATATAGTGATCGATTTCAAGGCTTGGGTAAATTAAAA
GGTGTTTCATTGAACATTAAGACTGACCCATCTATTCAACCAGTTGCACA
GAAACCTCGACGGCTTCCAATATTAATGCGAAAGGAAGTGGACACAGAAC
TAGATCGTCTTCTCGAGTTAGGTGTAATTGAACCAGTATCAGATCCACCA
TCATGGGTCAATCCAATCGTACCTGTCCCAAAGCCGAACTCTAGCAATAT
ACGTTTGTGTGTGGACATGAGAGCTGCTAACACTGCTATCATACGGGAAC
CATATCAAATCCCAACTCTTGATGAATTATTGCACGAATTCAACGGGTGT
AAACTGTTCACCAAACTTGATCTAAACGAAGGTTATCATCAAATCGAACT
AGATAAAGCGAGCAGAGAACTTACAGCATTTGCTACTTATCGTGGTATAT
TTCGGTACACTCGCCTTCTTTTCGGAATGTCATCTGCAGCGGAGATCTAC
CAACGTGAAATTGAATTAGCACTCACTGGTCTCCCAGGAGTTAAAAACAT
TTCAGATGACATTATTATTGGCGGCAGAACTGAAGAAGAGCTAATTTCAA
GAACAGAGGCAGTATTCGAGN Coding sequence (CDS) from alignment at scaffold_65:10937..11857 >TCONS_00071959 ID=TCONS_00071959|Name=TCONS_00071959|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_65:10937..11857 (Clytia hemisphaerica)
ATCAGTCAAGAAACTCTAACCAAAATGAACTTTGAACCCAAACGTCTTCC
ATACAAGGGGCAAGCTAAATCGTTTAATGCTCCAATTCCATTTGAAGAAT
GTTGTTATGTAAAAATCAGGGCAGGGAACTCTGAAATAAATGCCCGATTT
ATCATCAATCCTCACCCATCTGTTACTATCCTTGGATATGACTCGTCAAT
TGAATTGAACCTACTTCGTGTCGGACCTGATCCAGTTGCAACAACTACCA
CTACAGAAAGAGTTAATAACATTACTGCTAACTCTTCAAAGATGAATGAC
ATTATTACCGAATATAGTGATCGATTTCAAGGCTTGGGTAAATTAAAAGG
TGTTTCATTGAACATTAAGACTGACCCATCTATTCAACCAGTTGCACAGA
AACCTCGACGGCTTCCAATATTAATGCGAAAGGAAGTGGACACAGAACTA
GATCGTCTTCTCGAGTTAGGTGTAATTGAACCAGTATCAGATCCACCATC
ATGGGTCAATCCAATCGTACCTGTCCCAAAGCCGAACTCTAGCAATATAC
GTTTGTGTGTGGACATGAGAGCTGCTAACACTGCTATCATACGGGAACCA
TATCAAATCCCAACTCTTGATGAATTATTGCACGAATTCAACGGGTGTAA
ACTGTTCACCAAACTTGATCTAAACGAAGGTTATCATCAAATCGAACTAG
ATAAAGCGAGCAGAGAACTTACAGCATTTGCTACTTATCGTGGTATATTT
CGGTACACTCGCCTTCTTTTCGGAATGTCATCTGCAGCGGAGATCTACCA
ACGTGAAATTGAATTAGCACTCACTGGTCTCCCAGGAGTTAAAAACATTT
CAGATGACATTATTATTGGCGGCAGAACTGAAGAAGAGCTAATTTCAAGA
ACAGAGGCAGTATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071959-exon-scaffold_65-1491911889:10937..11857 | TCONS_00071959-exon-scaffold_65-1491911889:10937..11857 | Clytia hemisphaerica | exon |
| TCONS_00071959-exon-scaffold_65-1510915933:10937..11857 | TCONS_00071959-exon-scaffold_65-1510915933:10937..11857 | Clytia hemisphaerica | exon |
| TCONS_00071959-exon-scaffold_65-1575043694:10937..11857 | TCONS_00071959-exon-scaffold_65-1575043694:10937..11857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:10937..11857 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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