TCONS_00071956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071956
Unique NameTCONS_00071956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071956 ID=TCONS_00071956|Name=TCONS_00071956|organism=Clytia hemisphaerica|type=transcript|length=472bp
gattgatttgattgatataCAGTCAAGACCATCCGGTATCTATAAGTTTA
TTGGCCATGTTActgattgtttttcaaaatttcgtgtcatcTTCCCCCTT
CACTCCAAACATGCTGAAACTGTCGTTAATCAGTTGAATCCGCAAGTATT
TGCATACTTTGGATTACCAACCATCCTTCACAGCGACAACGGTACTGAAT
TTGTCAATGACCTTATTCATGCAACAATAATTATTTGGCCTGGTATTTGC
TCAATTGTCAATGGAGGTGTTCGTCACAGTCAATCACAAGGTCTTGTTGA
ACAAGGTAACGCGACTATAGAACGGATGATTTCATCCAAAGCAGCTGAAA
CTGGAAATGACAATTGGCACACCTGGCTTCCACAAATTCAGTGTATGTGT
TTTCTTATGAGGTTATGTATGAATTTTCATAACACATCccaaaaaagaca
aaggagtTTTAACAAATCTttt
Run BLAST on NCBI

protein sequence of TCONS_00071956-protein

>TCONS_00071956-protein ID=TCONS_00071956-protein|Name=TCONS_00071956-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
IDLIDIQSRPSGIYKFIGHVTDCFSKFRVIFPLHSKHAETVVNQLNPQVF
AYFGLPTILHSDNGTEFVNDLIHATIIIWPGICSIVNGGVRHSQSQGLVE
QGNATIERMISSKAAETGNDNWHTWLPQIQCMCFLMRLCMNFHNTSQKRQ
RSFNKSF
Run BLAST on NCBI

transcript from alignment at scaffold_65:3867..4338

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071956 ID=TCONS_00071956|Name=TCONS_00071956|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at scaffold_65:3867..4338 (Clytia hemisphaerica)
aaaAGATTTGTTAAAactcctttgtcttttttggGATGTGTTATGAAAAT
TCATACATAACCTCATAAGAAAACACATACACTGAATTTGTGGAAGCCAG
GTGTGCCAATTGTCATTTCCAGTTTCAGCTGCTTTGGATGAAATCATCCG
TTCTATAGTCGCGTTACCTTGTTCAACAAGACCTTGTGATTGACTGTGAC
GAACACCTCCATTGACAATTGAGCAAATACCAGGCCAAATAATTATTGTT
GCATGAATAAGGTCATTGACAAATTCAGTACCGTTGTCGCTGTGAAGGAT
GGTTGGTAATCCAAAGTATGCAAATACTTGCGGATTCAACTGATTAACGA
CAGTTTCAGCATGTTTGGAGTGAAGGGGGAAgatgacacgaaattttgaa
aaacaatcagTAACATGGCCAATAAACTTATAGATACCGGATGGTCTTGA
CTGtatatcaatcaaatcaatc

Coding sequence (CDS) from alignment at scaffold_65:3867..4338

>TCONS_00071956 ID=TCONS_00071956|Name=TCONS_00071956|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_65:3867..4338 (Clytia hemisphaerica)
aaaAGATTTGTTAAAactcctttgtcttttttggGATGTGTTATGAAAAT
TCATACATAACCTCATAAGAAAACACATACACTGAATTTGTGGAAGCCAG
GTGTGCCAATTGTCATTTCCAGTTTCAGCTGCTTTGGATGAAATCATCCG
TTCTATAGTCGCGTTACCTTGTTCAACAAGACCTTGTGATTGACTGTGAC
GAACACCTCCATTGACAATTGAGCAAATACCAGGCCAAATAATTATTGTT
GCATGAATAAGGTCATTGACAAATTCAGTACCGTTGTCGCTGTGAAGGAT
GGTTGGTAATCCAAAGTATGCAAATACTTGCGGATTCAACTGATTAACGA
CAGTTTCAGCATGTTTGGAGTGAAGGGGGAAgatgacacgaaattttgaa
aaacaatcagTAACATGGCCAATAAACTTATAGATACCGGATGGTCTTGA
CTGtatatcaatcaaatcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044672XLOC_044672Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071956-exon-scaffold_65-1491911889:3867..4338TCONS_00071956-exon-scaffold_65-1491911889:3867..4338Clytia hemisphaericaexon
TCONS_00071956-exon-scaffold_65-1510915933:3867..4338TCONS_00071956-exon-scaffold_65-1510915933:3867..4338Clytia hemisphaericaexon
TCONS_00071956-exon-scaffold_65-1575043694:3867..4338TCONS_00071956-exon-scaffold_65-1575043694:3867..4338Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071956-proteinTCONS_00071956-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:3867..4338 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.134896	0.26309	0	0	0.545746	0.287504	1.04058	0.324727	0	0	0.273336	0.449201	0.269146	0.186341	0.842585	0.41101	0.506331	0.311384	0.143398	0.600222	0.130425	0.381702	0	0.140617	0.434497	0.775556	0.369939	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00071956 vs. Swiss-Prot (Human)
Match: KRBA2 (KRAB-A domain-containing protein 2 OS=Homo sapiens GN=KRBA2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.342e-17
Identity = 44/130 (33.85%), Postives = 73/130 (56.15%), Query Frame = 2 
Query:    2 IDLIDIQSRPSGIYKFIGHVTDCFSKFRVIFPLHSKHAETVVNQLNPQVFAYFGLPTILHSDNGTEFVNDLIHATIIIWPGICSIVNGGVRHSQSQGLVEQGNATIERMISSKAAETGNDNWHTWLPQIQ 391
            ++++D+QS   G +KFI +  D  +KF ++ PL +K A  VV+ L   +F   G P++L SD+G EF N ++H    +WP +  IV+G     QSQG +E  +  ++ MIS+      + +W   L  +Q
Sbjct:  265 VEILDMQSSADGEFKFILYYQDHSTKFIILRPLRTKQAHEVVSVL-LDIFTILGTPSVLDSDSGVEFTNQVVHELNELWPDL-KIVSGKYHPGQSQGSLEGASRDVKNMISTWMQSNHSCHWAKGLRFMQ 392
The following BLAST results are available for this feature:
BLAST of TCONS_00071956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KRBA21.342e-1733.85KRAB-A domain-containing protein 2 OS=Homo sapiens... [more]
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