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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071951 ID=TCONS_00071951|Name=TCONS_00071951|organism=Clytia hemisphaerica|type=transcript|length=1321bp TTTGGATATTGGGCAAGGAAAAACGACACAAGACCAATCGTTAGAATTAG TTACCCAATCTGCCCATACTTCAGGACATGAACAATCTCCAGTCTTACCA CACAATCTTCTAAACAAATCGGCCAACAGTTTACGAAGCAAACTCAATTT ACAAAGTACACCGCCACATTTTCAAAAGTCACCGCATACCCCAAATAAAT CACAACGAAATTCCCCGACTATCACATCGTCTGGTAAAACGAAATCGCCA CACGTCCATAACAATAATTCAACATTTAATAGTGTTAAAAGAACGTCCTC AAGAAGAGACGCAGAGGAGATCATGAGCGAGCAAGTCATCGACAATAGTA GTATAATGGAAAAACTTGACAAACTCTATGAAAGGCAAACAAAAATCATG GACGCAATTGTTTTGCTGAAAAGTCACGTCGATGAACGTTTTGGAGCTCT TCCACTTCAAGAgcaactttttgaaatatcaaTGGTCACAACTCAAGAAG AAATGGTTGATCTTGAGCAAAATCTTGCCGACCAAGAATACCTTGACAAA TTTAAATCGCGCATTTCAAGAATTGGTGGCGAAGACTTTGGTTCAGCAAT CATCGAAATTATGGATAGATATTTCTCGAAATCGTTCCTGAGCCTGTGCA ATATGGAAGGTGCTAATGGCAAATTCGCCTTTAAAAATTCCTTGGCATAC AAAGCCATATCTGATGTGATCACCACCCGATACTCCTCAACAACCGATCA TGATGTGGCTAAGAAGGTGCAAAACAAGTTACGGAATGCTCCAGCCCAAA AAGGTGGTCTCGGtcgcaaaaagaaaaattgatttttaggattttcagta ttttaaaaatttcgtcTCGCAAAATTCAGAAAACAGCCTTCAGTTGCAAC GGAGATCTTGGCATTTTACAGCGAATCTTTTGTAACTCATGAATAAGCTC GAATAACCCTGAAAAGAACTTCTTTGACTCCAAAGAGAGTAACAGAAATT CCCAATAATTAATGAGTTTTCAATTTTCTGACGTTGCTCTCGTTGATTCC TGATTATAGAAAGACCATGTTATGAcactctttcattgaatattttcttt gtatttgagGTCTTCATTGATTAAGCCTTCAGAGCAAGAATGATAGCACA CTATTATGCTGGCTTAATCAAatctttgctttttcttttgcaAGAGTGCT TTTGTGAACATAAAGGATTTTCTGCTAAATTGTGAATATGAAATTGTAGA TATGTATTTATTTTCCAGATTTCATTTGTAAATAGAGATTAATTTATACT TAAATAACTCTTCATCAAGTA Run BLAST on NCBI transcript from alignment at scaffold_65:189512..193334- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071951 ID=TCONS_00071951|Name=TCONS_00071951|organism=Clytia hemisphaerica|type=transcript|length=3823bp|location=Sequence derived from alignment at scaffold_65:189512..193334- (Clytia hemisphaerica) TTTGGATATTGGGCAAGGAAAAACGACACAAGACCAATCGTTAGAATTAG
TTACCCAATCTGCCCATACTTCAGGACATGAACAATCTCCAGTCTTGTAA
GAATCTACAAATTGACTTTCATTGGGTCTAAACGTTTGCTAACTATATGA
CCTGTCCACGTCTCAATCAGTTAATGAAATATTCTTACATTTCTTACATA
AAGCCGGTTTTAGCTTTGTATTGGTTTCAAAGACTCCCACACGAGCAGGG
CATTCCAAATTAGCTTTAGAGAAATTAAATGGGTCAGAAATTTCGGTCAA
ACAATCTAAGTAAATATTTATTTTTATGCTCTTTTAGACCACACAATCTT
CTAAACAAATCGGCCAACAGTTTACGAAGCAAACTCAATTTACAAAGTAC
ACCGCCACATTTTCAAAAGTCACCGCATACCCCAAATAAATCACAACGAA
ATTCCCCGACTATCACATCGTCTGGTAAAACGAAATCGCCACACGTCCAT
AACAATAATTCAACATTTAATAGTGTTAAAAGAACGTCCTCAAGGTAAGA
TTTTCCAGAACAAATCAATTGTGATATTTTTCACTGAAAGTTGTAGCTCA
GAGGGTATTCTCGTTTTAACTGAATTAAACTGAGGCGATTCAGAGATGAA
TTAAGGAGACTTGAAATCATGTCTTTCAATATATCGATCAAGCATGACAG
TTCTCTTCTATCTAGTTTTTATCTTATTGTTGTTCTCTTATTCTTATTAG
AAGAGACGCAGAGGAGATCATGAGCGAGCAAGTCATCGACAATAGTAGTA
TAATGGGTCAGTTTATATGTCATAATTTTAGACAGAATTTAGAGAAGAGC
TATATTCGTCGTTTTATTAGAATACTTAAGACTGTTTGTCTAAAGTTCTT
TTAGATAAGTTACACCGGGTTGAACTTTATTTAGATGATAGTCTAACCTA
AATTTTACTTGTATTCGGATGATCAGTTCAAAAGCTATTGTCATTTAATC
ACCTATTTTTAATCTTATTTTGTATTCTTCGAAAGGTGATTTTTTACACT
GAATTTTAGCTACACCTTTTAAACCGATCGTTCTAATTTAAAAAGTAATA
CATTAAAATTTAAACCAGACCCCCTCTTCTATATTCAAGCAAAGTATGGC
TCGCAGATTAGTTTGACAGGTCTGAAAAAACTGCCAAACATCCGTAGATT
TTTTTTAAGCACCCAGTACATGAAAAAGATTGAGAAAAAATCGACCGAAT
CATTTTTATTTTGTTTGCTATTTTCCAGTATAGTTGAATAACCATTCCAA
TCATTTCATTTAGAAAAACTTGACAAACTCTATGAAAGGCAAACAAAAAT
CATGGACGCAATTGTTTTGCTGAAAAGTCACGTCGATGAACGTTTTGGAG
CTCTTCCACTTCAAGAGCAACTTTTTGAAATATCAATGGTCACAACTCAA
GAAGAAATGGTTGATCTTGAGCAAAATCTTGCCGACCAAGAATACCTTGA
CAAATTTGTAAGAAATTATTGCTTTTACATTAAAGGGGCACTCTGCAGGA
AAAATTTTTCCGAAATGTTTTTTATGCACTCAGGGATCACGAAGCAAACG
GTTTTTTTTAGGATTTACTTCTACTTNTTTTTTTAGAATTTACTTCTACT
TTTTTCACAATCGTGTTTCAAAAAATCTCTTATACTATACTCTGACTCTT
TTTTCAAACAAACTTTTTTTGCAGTGATAGTGCTACCTGGATGTTTTTCT
TTTTAACCTCAAATCAAGATTAGAAATTGTTAGTTACTGTTCATTTCATA
CACCCCTTTCTCACAGACCCGGTGGGATTTTTTCAGGTGGTTGGGATAAA
AATAACGGGCTGAAACTCAATAGGGATTGATATTTCTATATTTCTTATAG
CTGGGGATTTCAGTTCTTTTGTTTTCAAGTCAGATAATTCAGTGGGGATA
AGAAAAATAGCATATTATTTTATAGTATTTTTCAGTGAGGATTGGCTTAT
TTGTTTATTTTCAGTGGGGACAAAAATGGGAACAATTTTCCACCGGGACG
ATATTTTGGCCAATTTTTCCGGTGGGAAGGAGTCCTAGTGGGTCTGTGAG
AAGGGGGTGTATTTCATATATCTGAAAAGGAAAAATATATTAAAATTTCA
ATTTTCAGTGGAGTGCCCCTTTAAACTTACATCTAAATCTTTGACACGGA
ATAATGTTCGTCTTTTTGTTTAATAAGCATAACGCTTGTAAGTGTCCCTG
GCTCTAGAGTTGGGTTTTAAAACAATGGATGAATTCTAAAGTAAATGCTG
GACCTCACCAATAGACAGACACTTAATGAAACAATTATTTTATTAGAAAT
CGCGCATTTCAAGAATTGGTGGCGAAGACTTTGGTTCAGCAATCATCGAA
ATTATGGATAGGTAAAGACAATTTTTCTCTGCATTTTCCATGGTCTTTCA
GTAAGTCGTGAGTCTTAAAAATCCTTTACTGAATATGTAAACACTGCTTC
AGTGTTATTATAAATTAATTAATACCATCGTAAAAATAGAAGAGTCGAGG
GCGAGCGAAGTATATCATTAATAACCCTATACTAACTGTTTATGAAGGCA
ATACCATGTAATACTACACCTCTGCCTTAAAGCCAATATGAAGTTTCAAA
GTATTGAAGTTCTACTAAAATATTTGCTCCTGATTCAAACAGAACGTCAA
AAATTGCTTTTTGATTCAATTTTTCACCTCGTCATTTCAATATTTTATCT
TTCATTTAGATATTTCTCGAAATCGTTCCTGAGCCTGTGCAATATGGAAG
GTGCTAATGGCAAATTCGCCTTTAAAAATTCCTTGGCATACAAAGCCATA
TCTGGTAAGTTATTCATGATATGATGAAATTCATGATATGCACCACTGCA
ATGTCTTCTGACATTACATCACGGAACCAATCTCTCATTGGTTGTAAGTG
ACGTAAAATCAGTCAATACGTCACTTTGAACCAATCAGCTATTAGGTGGA
ATGGAAGACATTGCAATGGTGCATATCATGAATAAATGTAAACCAGTAAC
ATCTTTTTCATATTTCAATTCGGTTAGTCGCAGTTCCACCCCTGTTCAAG
ATAGGATCTATTCATTCATGCTATTAACTATGTTAGTGATTTTGATCTTA
GGGCTAGGACCTACTAGATTCACCCTTCTTGAGTTTTAAAACAATTCTTC
TGATTCTTTCTTCAGATGTGATCACCACCCGATACTCCTCAACAACCGAT
CATGATGTGGCTAAGAAGGTGCAAAACAAGTTACGGAATGCTCCAGCCCA
AAAAGGTGGTCTCGGTCGCAAAAAGAAAAATTGATTTTTAGGATTTTCAG
TATTTTAAAAATTTCGTCTCGCAAAATTCAGAAAACAGCCTTCAGTTGCA
ACGGAGATCTTGGCATTTTACAGCGAATCTTTTGTAACTCATGAATAAGC
TCGAATAACCCTGAAAAGAACTTCTTTGACTCCAAAGAGAGTAACAGAAA
TTCCCAATAATTAATGAGTTTTCAATTTTCTGACGTTGCTCTCGTTGATT
CCTGATTATAGAAAGACCATGTTATGACACTCTTTCATTGAATATTTTCT
TTGTATTTGAGGTCTTCATTGATTAAGCCTTCAGAGCAAGAATGATAGCA
CACTATTATGCTGGCTTAATCAAATCTTTGCTTTTTCTTTTGCAAGAGTG
CTTTTGTGAACATAAAGGATTTTCTGCTAAATTGTGAATATGAAATTGTA
GATATGTATTTATTTTCCAGATTTCATTTGTAAATAGAGATTAATTTATA
CTTAAATAACTCTTCATCAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071951-exon-scaffold_65-1575043694:193239..193334 | TCONS_00071951-exon-scaffold_65-1575043694:193239..193334 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:192791..192997 | TCONS_00071951-exon-scaffold_65-1575043694:192791..192997 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:192529..192584 | TCONS_00071951-exon-scaffold_65-1575043694:192529..192584 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:191828..192021 | TCONS_00071951-exon-scaffold_65-1575043694:191828..192021 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:190924..190988 | TCONS_00071951-exon-scaffold_65-1575043694:190924..190988 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:190481..190575 | TCONS_00071951-exon-scaffold_65-1575043694:190481..190575 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1575043694:189512..190119 | TCONS_00071951-exon-scaffold_65-1575043694:189512..190119 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:193239..193334 | TCONS_00071951-exon-scaffold_65-1510915933:193239..193334 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:192791..192997 | TCONS_00071951-exon-scaffold_65-1510915933:192791..192997 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:192529..192584 | TCONS_00071951-exon-scaffold_65-1510915933:192529..192584 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:191828..192021 | TCONS_00071951-exon-scaffold_65-1510915933:191828..192021 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:190924..190988 | TCONS_00071951-exon-scaffold_65-1510915933:190924..190988 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:190481..190575 | TCONS_00071951-exon-scaffold_65-1510915933:190481..190575 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1510915933:189512..190119 | TCONS_00071951-exon-scaffold_65-1510915933:189512..190119 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:193239..193334 | TCONS_00071951-exon-scaffold_65-1491911889:193239..193334 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:192791..192997 | TCONS_00071951-exon-scaffold_65-1491911889:192791..192997 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:192529..192584 | TCONS_00071951-exon-scaffold_65-1491911889:192529..192584 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:191828..192021 | TCONS_00071951-exon-scaffold_65-1491911889:191828..192021 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:190924..190988 | TCONS_00071951-exon-scaffold_65-1491911889:190924..190988 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:190481..190575 | TCONS_00071951-exon-scaffold_65-1491911889:190481..190575 | Clytia hemisphaerica | exon |
TCONS_00071951-exon-scaffold_65-1491911889:189512..190119 | TCONS_00071951-exon-scaffold_65-1491911889:189512..190119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_65 | supercontig | scaffold_65:189512..193334 - |
Blast
The following BLAST results are available for this feature:
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