|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071949 ID=TCONS_00071949|Name=TCONS_00071949|organism=Clytia hemisphaerica|type=transcript|length=367bp
AAATGTCTATGTTCAAtgaatcaaaattttggtaatGGATTTAATAGCAC
ATCAACGCAAGTGAAGATTAAAATGGACTCCGATTGTCTCGTCCAACGCA
AAGAAGTTTGAGTGGAAGTAAATTCAAATCAGATTTGTTATATCAAGTCC
ATCCAACCACCACAAGAACATTTAAACactattttgaaatatatacCTTT
GCTGCGTCTGTATTCTcccattttctttcaaaatcgtCCAATTCTTTTTT
CGtggctaaaaagaaaaagaaaaagaaaaatgttaaatttcaaATACCCT
CATTcgtaataaaattttcttaaaattgtatTTGGGGGTGGAGgaaaata
acaattttcaatgattt Run BLAST on NCBI transcript from alignment at scaffold_65:176209..177472- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071949 ID=TCONS_00071949|Name=TCONS_00071949|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_65:176209..177472- (Clytia hemisphaerica)
AAATGTCTATGTTCAATGAATCAAAATTTTGGTAATGGATTTAATAGTAA
GTAGTTTTACCGGTTCTGGTCCACTGCTATCTTTTTGGGAATCTTTCGAC
CTGGCTGATTTTGCTTTCTTGAGCTTTCCAGCAGTGTTGGTGTTTTCTGT
GATTGTGGTTTTTGACTTTTTAGCTGATTTCCGAGGCTGAGAAGATTTTG
ATTGGGTTTTTGACTTTGAGATTGTTGATGATTTTTCGGTTGTCGGTTTT
TGGCTTGTTGGTGGTTTTTCGGTTGTTGTTTTCAAGGTTGTTGGTGGTTT
TTCAGATGTCGCTTTCAAGGTTGTTGGTGGTTTTTCAGATGTCGCTTTCA
AGGTTGTTGGTGGTTTTTCAGATATTGGTTTCGGGCTTGCTGGTGGTTTT
CCGCTCTTTGACTTTGTTTCCTCGACATACGTTTTACGCTTTTGTTGAGT
CTAAAAAGAAAATTTATAATTCTTGCTACATGTTTTTATAAGCATAGGGT
AAATTTTAAGGAGTTTGTAAACGGAGGCTCGGTATGCTTAAAAGCTTCAT
TCTGTATGCTTATAAAAAATGTGTCAATTAATTGTTTGGTGAACAATTTG
ATACGTAAAGTGCTCAATGCCAGAGAAAATAAAAAAAAATCGTATAAAAA
ACGTGTAAGCCGTAAGCAGGGGGGGGGGTCGGTAGTAAAATCTCAGACAT
AATGACGTTTACTACGGTGGTGGTGTGACGAAAGATTGAGAAGAATAATT
TACTACCCAGGGTAGTTAAAACTGGTAAAATTTGCAAATTTTAGCTATTT
TTGTAATTCTTTTAATTTTTTGGATGACTTTTCTGAAAAAATCTGAAAAT
TTTTATAACTTGAAAAAATATTCTGTTGGAAAGTTGTTTGCTGCAAACAA
AAATTTCTGAAGTTAGGTGACGGAATTTATATTGCTTTTTCAGGCACATC
AACGCAAGTGAAGATTAAAATGGACTCCGATTGTCTCGTCCAACGCAAAG
AAGTTTGAGTGGAAGTAAATTCAAATCAGATTTGTTATATCAAGTCCATC
CAACCACCACAAGAACATTTAAACACTATTTTGAAATATATACCTTTGCT
GCGTCTGTATTCTCCCATTTTCTTTCAAAATCGTCCAATTCTTTTTTCGT
GGCTAAAAAGAAAAAGAAAAAGAAAAATGTTAAATTTCAAATACCCTCAT
TCGTAATAAAATTTTCTTAAAATTGTATTTGGGGGTGGAGGAAAATAACA
ATTTTCAATGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071949-exon-scaffold_65-1575043694:177427..177472 | TCONS_00071949-exon-scaffold_65-1575043694:177427..177472 | Clytia hemisphaerica | exon |
| TCONS_00071949-exon-scaffold_65-1575043694:176209..176529 | TCONS_00071949-exon-scaffold_65-1575043694:176209..176529 | Clytia hemisphaerica | exon |
| TCONS_00071949-exon-scaffold_65-1510915933:177427..177472 | TCONS_00071949-exon-scaffold_65-1510915933:177427..177472 | Clytia hemisphaerica | exon |
| TCONS_00071949-exon-scaffold_65-1510915933:176209..176529 | TCONS_00071949-exon-scaffold_65-1510915933:176209..176529 | Clytia hemisphaerica | exon |
| TCONS_00071949-exon-scaffold_65-1491911889:177427..177472 | TCONS_00071949-exon-scaffold_65-1491911889:177427..177472 | Clytia hemisphaerica | exon |
| TCONS_00071949-exon-scaffold_65-1491911889:176209..176529 | TCONS_00071949-exon-scaffold_65-1491911889:176209..176529 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:176209..177472 - |
Blast
The following BLAST results are available for this feature:
|
