TCONS_00071948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071948
Unique NameTCONS_00071948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071948 ID=TCONS_00071948|Name=TCONS_00071948|organism=Clytia hemisphaerica|type=transcript|length=1971bp
CGTTCCCCGTTTGCAAAGACaagttcttgatttttttatcgCGCTGTAAT
CATGGCTggaaaacgtcaaattgacatATCAGAAGAGGAAcgaattgaga
aattttttcaagatgGGTGTCTGTGTAGAAAGAACTGTtatacaaaattt
acaaaagaagAAGTTGTTGACATAAGAAACGACGTATTGGAGTTGGAGGA
TACAGAGCGTGATATGCTGCTAATGGGGTTTCTTCTCACTCAAAAACCCA
AAAGTGGTGAGAATATTGAATTTTACATCCGTGGTATTTGTGTATGCcga
acaaaatttttgttttgctttgcaATTTCCAAGACGCTCTATTCTGCCGT
TTGTAAGCATTTTAATGAGTATGGTCCTGTCCCTCGCGTTCATGGAAACT
CGAAGCGGTTACCGCACAACGTTATTGACTTAGAACATGTCGAGCGGGCA
CGTAACTTCATAGAGAATTATGCCCTTGCTTACGCTAAACCACTCCCCGG
ACGGGTCCCTAATTACCGTGACAACGATGCGAAATTACTCCTCATTCCAT
CTCATGAGACCAAAGAGATCGTTTATAGCCAATATCGCGACCTCTGTATC
GAGAATAATTTTGATTATATGGGACTGAGTACCTTTGCTAAATTATGGAA
GTCTCAATTACCGAACGTTTTGATAACAAAGCCACTTGGTGATCTATGTT
GGGTTTGTCAACAAGGAAACGAACGCCTTCTTCGCGCGCACCTAGACAGT
GAAGATGAGAATGAACACGACGAGGCACAGGATGAACAAACCCTTCATAT
TGTGCAAGCGACTGAGGAAACCCGATATTACAGGGCACAGGTAATGGAGG
GATAAATCACTACGGGGtcgattttttgtaaaagtggAACACGTTtcttt
tcgagtgatttacccgTCCTTTCAATTAAATCAAGCCCTCTcattgcgaa
atttaatacacgagaaatataataccaataaggtaccTTAAGGTATTTTT
GGGACTTTTTTGGTTTGTAAAcgatttttcggaaaaattgaagaaaaaaa
gccTAATCAAACATTATCCCAACTTTTCTTAAAAGGTCGAAGAAGCAAAA
TCCCAAGCTGTCAACTTCAACGAGCCATTCGAAAAACACGCTCCTTGCAC
TTATaagggattggctcattatagTTGGGATTATGCCCAGCAAACCCACT
ATCCATATAACCCACTCCAACCTGGgccgatttttttcaaaacccccAGA
AAGTGTGGGATTTTTGGGATTTGTAATGACGGCATAAACCTTCAGTACAA
CTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCA
TCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGAC
TCATATCTACATGCTGATAACTGCTCAGGACAGAATAAGAACAATGCTTT
TATTTGGTATTTGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTG
AGTACAGTTTCATGATAGCCAGCCACACGAAATTCAGCTGTGACAGGTGC
TTCGGCAGCTTCAAAAAGAAACTACGATTAACTCGAGTATCATCTCTGTA
CGAGATCGCTGATGTTTGCGACCAATCAAAATGTAATTTCGCTGTACTTG
TTGGTAACCACAACAAAGATATCACTGTTCAAACGTATGACTGGTCACAT
TACTTTGAAAAGGAGTTACGGTTCCAGACCATCAAAGATATTCTTAAATA
TCACCATTTCAGGATGTCGAAGGATCAGCCTGGAATTGTTAAGTGTTATA
AATCACTAGATGATGAACCAGTCGAGTTCTCCATTTTCATTCAGCGAAAT
CCACCAAAAGTGACTGCTGCATTACCGAAGATCGTCCCACCGAAAGGATT
CACGAAACAGCGGGCTGAATATTTGCGTAAAGAAATTCGTCAATTCTGCA
AACATGGAACGGAGGATTTGG
Run BLAST on NCBI

protein sequence of TCONS_00071948-protein

>TCONS_00071948-protein ID=TCONS_00071948-protein|Name=TCONS_00071948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MAGKRQIDISEEERIEKFFQDGCLCRKNCYTKFTKEEVVDIRNDVLELED
TERDMLLMGFLLTQKPKSGENIEFYIRGICVCRTKFLFCFAISKTLYSAV
CKHFNEYGPVPRVHGNSKRLPHNVIDLEHVERARNFIENYALAYAKPLPG
RVPNYRDNDAKLLLIPSHETKEIVYSQYRDLCIENNFDYMGLSTFAKLWK
SQLPNVLITKPLGDLCWVCQQGNERLLRAHLDSEDENEHDEAQDEQTLHI
VQATEETRYYRAQVMEG
Run BLAST on NCBI

transcript from alignment at scaffold_65:170383..173268-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071948 ID=TCONS_00071948|Name=TCONS_00071948|organism=Clytia hemisphaerica|type=transcript|length=2886bp|location=Sequence derived from alignment at scaffold_65:170383..173268- (Clytia hemisphaerica)
CGTTCCCCGTTTGCAAAGACAAGTTCTTGATTTTTTTATCGCGCTGTAAT
CATGGCTGGAAAACGTCAAATTGACATATCAGAAGAGGAACGAATTGAGA
AATTTTTTCAAGATGGGTGTCTGTGTAGAAAGAACTGTTATACAAAATTT
ACAAAAGAAGAAGTTGTTGACATAAGAAACGACGTATTGGAGTTGGAGGA
TACAGAGCGTGATATGCTGCTAATGGGGTTTCTTCTCACTCAAAAACCCA
AAAGTGGTGAGAATATTGAATTTTACATCCGTGGTATTTGTGTATGCCGA
ACAAAATTTTTGTTTTGCTTTGCAATTTCCAAGACGCTCTATTCTGCCGT
TTGTAAGCATTTTAATGAGTATGGTCCTGTCCCTCGCGTTCATGGAAACT
CGAAGCGGTTACCGCACAACGTTATTGACTTAGAACATGTCGAGCGGGCA
CGTAACTTCATAGAGAATTATGCCCTTGCTTACGCTAAACCACTCCCCGG
ACGGGTCCCTAATTACCGTGACAACGATGCGAAATTACTCCTCATTCCAT
CTCATGAGACCAAAGAGATCGTTTATAGCCAATATCGCGACCTCTGTATC
GAGAATAATTTTGATTATATGGGACTGAGTACCTTTGCTAAATTATGGAA
GTCTCAATTACCGAACGTTTTGATAACAAAGCCACTTGGTGATCTATGTT
GGGTTTGTCAACAAGGAAACGAACGCCTTCTTCGCGCGCACCTAGACAGT
GAAGATGAGAATGAACACGACGAGGCACAGGATGAACAAACCCTTCATAT
TGTGCAAGCGACTGAGGAAACCCGATATTACAGGGCACAGGTAATGGAGG
GATAAATCACTACGGGGTCGATTTTTTGTAAAAGTGGAACACGTTTCTTT
TCGAGTGATTTACCCGTCCTTTCAATTAAATCAAGCCCTCTCATTGCGAA
ATTTAATACACGAGAAATATAATACCAATAAGGTACCTTAAGGTATTTTT
GGGACTTTTTTGGTTTGTAAACGATTTTTCGGAAAAATTGAAGAAAAAAA
GCCTAATCAAACATTATCCCAACTTTTCTTAAAAGGTCGAAGAAGCAAAA
TCCCAAGCTGTCAACTTCAACGAGCCATTCGAAAAACACGCTCCTTGCAC
TTATAAGGGATTGGCTCATTATAGTTGGGATTATGCCCAGCAAACCCACT
ATCCATATAACCCACTCCAACCTGGGCCGATTTTTTTCAAAACCCCCAGA
AAGTGTGGGATTTTTGGGATTTGTAATGACGGCATAAACCTTCAGTACAA
CTATTTGATTGATGAAATCAATACAACTGGGAAGGGGGCAAATGCAACCA
TCAGTTACTTACATCACTTTTTCGAGTATTATGGAATGGGTGAGACGGAC
TCATATCTACATGCTGATAACTGCTCAGGTAATGCTGGACTACAAAAATG
TTAGAATTTGCTGACAACCAGGCGACCTAGCCAAAATTTAAATGCTATCT
TTTTAAAGAAAACTTTCCCATTCAAAAAAACTGTTCTCTTAATTTTTTTT
ATTGTAAACTACAGGCTTGATATATGCTGAAGTTTTTCTCAGATTTGAGC
CTGGATATGCTTATGACTGGCTCTATTTTTGTGTGGACTAATCAAGGAAT
TTCGCACAAATCAAATTTTGCAAGTTAACTTTTAATTTTTTTCACTGGGT
TAATGGCAAATCCATTGTGTCGCTGGGTGAGATTTTGGATCGGTCCAATA
CTCGGTTCCATGAAAATAACTGAAATGAAATTTCAGTCCGCCCCCAAAAA
TGCATGTAAACAATTTGGAAAAATATCAACCCGCCCCTGAACTGAGATTT
ACACTTGAAAAAACAAAAATTGCAAAAATTAATCCAGTTTAAGTAAATAT
ATTCTTTTCACTTTCAGGACAGAATAAGAACAATGCTTTTATTTGGTATT
TGATGTGGAGGATTTTGAATGGTTTCCATGAAAAGATTGAGTACAGTTTC
ATGATAGCCAGCCACACGAAATTCAGCTGTGACAGGTAATAAAAGAATTT
TGTTGGGTAAGTTTGTTGTTTCAAGCAAGGTAAACAGACTTAAAAATTAA
TTCCACTTTTTAAGTTGGTTTATTACCTGTCACAGCTTTTAATTCAGACT
TAAGTCTTGTTCAGCATAATTTTAGACAAAATTTTTAAAACATAATTCAT
TAAAACATTAAAAATTACAAAAATAGTTGTCGAATAAGACTGAACTTTAA
TAAATGGTGGTTGTCGTCACCTGACCAACCCTTCTCAAAACTTACCAACC
CAGAAAATTTTTTTACTCTGAAAATTAAATAGAAATTTTGAAAAATCATC
AAAACAAAATATTTCTTTTCGAGCGACCGGTCAATCTAGGGTCAGGTGAT
GACAAACCAATTTATATTTTTAAGCGCAGCCTAAAATGTATATTTTTGTA
TCTTCTTTAAGGTGCTTCGGCAGCTTCAAAAAGAAACTACGATTAACTCG
AGTATCATCTCTGTACGAGATCGCTGATGTTTGCGACCAATCAAAATGTA
ATTTCGCTGTACTTGTTGGTAACCACAACAAAGATATCACTGTTCAAACG
TATGACTGGTCACATTACTTTGAAAAGGAGTTACGGTTCCAGACCATCAA
AGATATTCTTAAATATCACCATTTCAGGATGTCGAAGGATCAGCCTGGAA
TTGTTAAGTGTTATAAATCACTAGATGATGAACCAGTCGAGTTCTCCATT
TTCATTCAGCGAAATCCACCAAAAGTGACTGCTGCATTACCGAAGATCGT
CCCACCGAAAGGATTCACGAAACAGCGGGCTGAATATTTGCGTAAAGAAA
TTCGTCAATTCTGCAAACATGGAACGGAGGATTTGG

Coding sequence (CDS) from alignment at scaffold_65:170383..173268-

>TCONS_00071948 ID=TCONS_00071948|Name=TCONS_00071948|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_65:170383..173268- (Clytia hemisphaerica)
ATGGCTGGAAAACGTCAAATTGACATATCAGAAGAGGAACGAATTGAGAA
ATTTTTTCAAGATGGGTGTCTGTGTAGAAAGAACTGTTATACAAAATTTA
CAAAAGAAGAAGTTGTTGACATAAGAAACGACGTATTGGAGTTGGAGGAT
ACAGAGCGTGATATGCTGCTAATGGGGTTTCTTCTCACTCAAAAACCCAA
AAGTGGTGAGAATATTGAATTTTACATCCGTGGTATTTGTGTATGCCGAA
CAAAATTTTTGTTTTGCTTTGCAATTTCCAAGACGCTCTATTCTGCCGTT
TGTAAGCATTTTAATGAGTATGGTCCTGTCCCTCGCGTTCATGGAAACTC
GAAGCGGTTACCGCACAACGTTATTGACTTAGAACATGTCGAGCGGGCAC
GTAACTTCATAGAGAATTATGCCCTTGCTTACGCTAAACCACTCCCCGGA
CGGGTCCCTAATTACCGTGACAACGATGCGAAATTACTCCTCATTCCATC
TCATGAGACCAAAGAGATCGTTTATAGCCAATATCGCGACCTCTGTATCG
AGAATAATTTTGATTATATGGGACTGAGTACCTTTGCTAAATTATGGAAG
TCTCAATTACCGAACGTTTTGATAACAAAGCCACTTGGTGATCTATGTTG
GGTTTGTCAACAAGGAAACGAACGCCTTCTTCGCGCGCACCTAGACAGTG
AAGATGAGAATGAACACGACGAGGCACAGGATGAACAAACCCTTCATATT
GTGCAAGCGACTGAGGAAACCCGATATTACAGGGCACAGGTAATGGAGGG
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044669XLOC_044669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071948-exon-scaffold_65-1575043694:171841..173268TCONS_00071948-exon-scaffold_65-1575043694:171841..173268Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1575043694:171234..171351TCONS_00071948-exon-scaffold_65-1575043694:171234..171351Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1575043694:170383..170807TCONS_00071948-exon-scaffold_65-1575043694:170383..170807Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1510915933:171841..173268TCONS_00071948-exon-scaffold_65-1510915933:171841..173268Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1510915933:171234..171351TCONS_00071948-exon-scaffold_65-1510915933:171234..171351Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1510915933:170383..170807TCONS_00071948-exon-scaffold_65-1510915933:170383..170807Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1491911889:171841..173268TCONS_00071948-exon-scaffold_65-1491911889:171841..173268Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1491911889:171234..171351TCONS_00071948-exon-scaffold_65-1491911889:171234..171351Clytia hemisphaericaexon
TCONS_00071948-exon-scaffold_65-1491911889:170383..170807TCONS_00071948-exon-scaffold_65-1491911889:170383..170807Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071948-proteinTCONS_00071948-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:170383..173268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.122505	0.158897	0.148659	0.0726621	0.369245	0.64419	0.618336	0.500367	0.176	0.402486	0.366261	0.442707	0.184109	0.286451	0.239367	0.257528	0.282433	0.41869	0.453083	0.215354	0.376688	0.354155	0.112827	0.148661	0.487358	0.376549	0.151802	0.355578	0.344722	0.0314546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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