TCONS_00071945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071945
Unique NameTCONS_00071945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071945 ID=TCONS_00071945|Name=TCONS_00071945|organism=Clytia hemisphaerica|type=transcript|length=264bp
GTTTCTTAACGTCAAAACATATGTCATTTTGAAAAGGAGAAGAACAGAGA
TTGtaaaaggtaattttttgtttgcaattATAGCCAACGGCACTGTGGAC
TGTTGCAACTGTGCACCTCTCATAACAGATACAAAATCCTTCGAAGTTTT
AGGCTACTACTGTAACTACTAGAAGCCATTTATTTGGCGTATAGTTTTGA
TTACCCATTACGTTTTGCCGAGACTTTGTGCAAGGCTATGGACCGTTGTT
TTGAAAAAGTAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_65:124000..124263-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071945 ID=TCONS_00071945|Name=TCONS_00071945|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_65:124000..124263- (Clytia hemisphaerica)
GTTTCTTAACGTCAAAACATATGTCATTTTGAAAAGGAGAAGAACAGAGA
TTGTAAAAGGTAATTTTTTGTTTGCAATTATAGCCAACGGCACTGTGGAC
TGTTGCAACTGTGCACCTCTCATAACAGATACAAAATCCTTCGAAGTTTT
AGGCTACTACTGTAACTACTAGAAGCCATTTATTTGGCGTATAGTTTTGA
TTACCCATTACGTTTTGCCGAGACTTTGTGCAAGGCTATGGACCGTTGTT
TTGAAAAAGTAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044667XLOC_044667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071945-exon-scaffold_65-1575043694:124000..124263TCONS_00071945-exon-scaffold_65-1575043694:124000..124263Clytia hemisphaericaexon
TCONS_00071945-exon-scaffold_65-1510915933:124000..124263TCONS_00071945-exon-scaffold_65-1510915933:124000..124263Clytia hemisphaericaexon
TCONS_00071945-exon-scaffold_65-1491911889:124000..124263TCONS_00071945-exon-scaffold_65-1491911889:124000..124263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:124000..124263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.833799	0	0	0	0	0	0	0	0	0	0	0	0	0.951474	0	0	1.1956	2.62427	0.70892	1.28902	3.98299	2.36981	6.40306	10.6915	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top