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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=transcript|length=2304bp AAAGTCAGCAGTAACGCGTCAACCTCCTCTTCTTACTCTGCTCTTACGCA TAGTACCATCCCTTGTTTCCAAAGTACCAATTTAACTGACACCATCCAGA GATTATATCATTTCACCCCAAATGTACAGTACTTCACTATTTCATTATCA ACCGATAGAATCATTAGTGTTTGATGCCCTTGCATAGTATCACATTTTGG ATTTCAATGCAACGGTTTCTTAACGTCAAAACATATGTCATTTTGAAAAG GAGAAGAACAGAGATTGtaaaagATTTTCAAGCATATGAAACGCGGAGAA GATAATAAACCTATTGAAATCCGTTAAATAAAAGCAGATGCGAAAAGAAT CGAAGAGAAGAGACTAGTTCTTCCCCTTATAACAAATCGAGACAACGCGG ATGTTAAAAAACTGAAGAATTTTGCTGAACTGAAATTTACACGCACAAAA TTATTGAGATCAATATTTGGATGATAAACTGTTTAtgtgtttattttgtt ttggttgtttaGGTTTGTTTATTCCCAAGTGAGGCTCACACACTTTGCCG ATCAGTCAAGCGAAACTAGAGATTTTTGGTAAATCACGAATGAGGGAAAT CGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCGAACCCTTGGTA GCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCTTTCGTACCAAG GGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACAGTTGATGATTC CATTGAagagaaaactttaaaaattgatGAAGTGAATGGAAAAGAAGTTG TTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGGATTGTGAAGAA AAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAGAGGGAGGGAAA ATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCATCGATGAAGATT TGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTAGAAACATGAAA CGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGATGCGAGTTGGA AAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAACTCGACTGAAGA AAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGATTGAAAGGAAA GATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAGCAACATCAGAA AGATCTTGAGATGTATAAAacgaaaattgaagaagaattCAATACTAAAT ACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTGCGATCGAGAAT GTTCAACGCATTATACAAAACAATGAACAAACGTTTGGGAATTTACACGA ATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGATCTCATCCTTA AGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTATCGGAGGAGGA CTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGTAGTGAAGAAAG TGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCGTAGTTTTGAAT ACGAGAGTCGCTCTGATGACGATATACAACACGAAATGGCGGATGTGTAT CGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCAGAAAAAGATGA AGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGAACGTGAAGTGC GAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACGCTTGGCGTGAT ACAATCGAAGATCTTGAACGCGagatcaatattttgaaatttgagcgAGA GCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAATGAGAACGGAAT TCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCGAAACACAAACT ATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTTATGAAAGAGAA GAAAGTTTGCGTCTCTGACTAGTTAGATTATATACGATTTTTAACCTTCT GTCTCAAGTTTTATCTTTAAAAGTCTAATCTCAAGAAATTCTAATTAAGT TGAAATCGCGTTCTTTTAACGAGACATTCAAGGTTGTTTTAAAGGTTATT TGGGTTATATTTGAGGGTTTTATGTTGTGTTCATTACTGTGTTTTAACTT TTAATTCTAATTTtaattacaatattttatagcaatgttcttaattttaa attttattgtgagattttattttttgaaaagagatagTAAGTATTAAGTT AGATagagaatttattttcaaatttgaaataattttaatttaataaatgt gaga Run BLAST on NCBI protein sequence of TCONS_00071944-protein >TCONS_00071944-protein ID=TCONS_00071944-protein|Name=TCONS_00071944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MREIERNTFHQKGKSSRTLGSMVRFPNLMNRSIFRTKGLSPEVGKVNHKT VDDSIEEKTLKIDEVNGKEVVSGNIPSLQTHSVDCEEKLTLKTGLLLDQE REGKCSGNDKMELKGCIDEDLEGRTVDELQEQIRNMKRTYLFEQNHLMEG CELEKFELRESYEEEKTRLKKAFENEKTELLKEIERKDKMLEKLADVLKE QHQKDLEMYKTKIEEEFNTKYILCEKFNKTLQTAIENVQRIIQNNEQTFG NLHEFKTLKECKTQMNDLILKKDSGVFNAQNETIGGGLIRSISDPTQQRR SEESAVVKCKLNETKARSFEYESRSDDDIQHEMADVYRKQKAELVKLFTA EKDEDRQRLRDEKERFEREVRTEYDSRMIVERNAWRDTIEDLEREINILK FEREQLDRNYCLGMDEMRTEFEVEKQQMYRRFSETQTMYQNKLRDFRKDV MKEKKVCVSD Run BLAST on NCBI transcript from alignment at scaffold_65:119064..124477- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=transcript|length=5414bp|location=Sequence derived from alignment at scaffold_65:119064..124477- (Clytia hemisphaerica) AAAGTCAGCAGTAACGCGTCAACCTCCTCTTCTTACTCTGCTCTTACGCA
TAGTACCATCCCTTGTTTCCAAAGTACCAATTTAACTGACACCATCCAGA
GATTATATCATTTCACCCCAAATGTACAGTACTTCACTATTTCATTATCA
ACCGATAGAATCATTAGTGTTTGATGCCCTTGCATAGTATCACATTTTGG
ATTTCAATGCAACGGTTTCTTAACGTCAAAACATATGTCATTTTGAAAAG
GAGAAGAACAGAGATTGTAAAAGGTAATTTTTTGTTTGCAATTATAGCCA
ACGGCACTGTGGACTGTTGCAACTGTGCACCTCTCATAACAGATACAAAA
TCCTTCGAAGTTTTAGGCTACTACTGTAACTACTAGAAGCCATTTATTTG
GCGTATAGTTTTGATTACCCATTACGTTTTGCCGAGACTTTGTGCAAGGC
TATGGACCGTTGTTTTGAAAAAGTAGAAATTTCGTAGAAATTGGACTCGC
CTTGGATTCCAGGGCAAACAACGTTTTTAATTTGATGTTTTTGATAATGT
ACTAGCCCTGGTGTTGAATGGCTTAAAATTAATGGCTTAAAATATCTGAG
ATTGAGATTGGTGACGAAATCTTGAACTCAATCTTCACCCAACTGCTTTG
TTCTAAAAAAAGTAAAAGGAGTTGTTAGGCAAACTCGAACCCAGTCCCTT
AGTTCGTTTTTTTATGATTCAGATAGTGCTCAAAATTGTATCACGTCCAA
CTGTGAAATCAAAAAGTGGTGTATGTGTATCTCTGACGATCTCTGAAACG
AGATTGAACTTTTTGATTTTGTTCCCAGACCTCTTGGTAATCGAGTTGGG
TGGTATGTAAACCTTAAGTGTAGGAATTATCATGGTAGATGATTTAGAAG
ATGGATATAGAAGAATGGTTATTTACATCGAGGGTACTAAATCTTGTATG
TAATATTTCCATTTGATTCTCACCCGTTTTAAAATTTCATAATATCAAGA
ATCGATTGATTAGCCACCTTTATCAATATTTGACAACAAAAATTTCCCTT
TTTCGAAATATTATTTGTGTTAAATATTTGAACATCTCTCAATGTTCCCT
TAGAAATTTCTATAGTTCGCCCTTCGTATGAAATTTTTCACAAAACGACA
AATAAGTGGTGGAAAATGATGATCAATGGTTGAAGTAGTCATGTGCAGGG
TTTTGGGACATTAGGAAATTAAAAATACTGTTTTTGTGTTTGATTTGACC
GAAGATACTGGGTTAAAGGACATCATTTATCGTATCGCCTATCCTTTGCT
TACTCAGCATTTTTCAACAAAAGAAATGTCAAGTTTCTTACCTTTCATCC
TTTCATTCAGCGCTGCGTGAACACAAATTTTGAGTGATTCTAAAACAACA
TGTCTCATATCTAAAGTTAGTTTATTCTATATGACGTCTGATGCAGAATT
TTGCCAGGTAGCGTCAAAGACTGAACCTGACCTGGTTGACCTGAACCCCG
GACCTCGTTTTCAGGGATTGTTGGGATTTTTTCCAAGGGTTAAAAGTCAC
CTGAAGAAATAAGAATTTTTAAATTAATTTATTCAAATCTCAAAACCCAG
TGGGGATTCTTTGCTTTTCCAAGTCGGGATTATACTTATTCAGTCTAGAG
GTTAGATTATTTTGACCGCGNAAGAATTTTTAAATTAAGTTATTCAAATC
TCAAAACCCAGTGGGGATTCTTTGCTTTTCCAAGTCGGGATTATACTTAT
TCAGTCTAGAGGTTAGATTATTTTGACCGCGATATCTTAAACCATGAACA
TACTTGAACACATTTTTCATTTTCTAAAAGCTGTATGTGTAATCGCCATT
AATTGTTGTTCAATCTCCAAACCACAGGAGATTTAATTTATGAATAACGA
TTAAAAAAACACGCGAAAATAAACGCATGTTGTTAATTAGTCTCAAATAT
CAAATAATTGTTTGTGCATTGGATTTTTCGTCATTTACTAATTTGAAGAC
GGATATGAGACATGTTGTTGTTTTCGAAAAATCTGCAAACCTCTCTGAAA
ATTTCAGGACAAAATTGCAGACGAATGTCACCCTTTACATTAGAGTGCAG
TATTGCAGTTGTATGAATGAGAGTTTTTTTGGGTGAGCCTAAAATTGAAA
TTTGTAGTTTAGTTTCATATGACTATGTTCGTACAGACAGCTCTTTCTCG
GCTGAATAAGCGTGAAAATCTTTCAAGGTGAATTCCACTGGGGAACTGAA
AGACAGCAGTATTTCTACTGCTGCAAAAGTGTTTTGCTGAATGTTGGAAA
GGCTGAAGATTGAGCAGCATTATTTTGTTAACTAAATCTCTACACGTTCT
TTTTTATAAGAACATAAGGCTGTGAAGGCCAAGATGTTAAGGACAAGTTA
AGAGGTTTTAGGCTTTGCAGACTCTAGAACATCGAATTTCATAGGAAAAT
GGATAAAAATACTAGAAAAATGGCAAAAATAGGCACATGTTAAGAACATC
TCGAAGAACATTTTTAGGCTTCAAAACTCAAAAAGTTGAGAACATCCCAA
GGCTTCAAAAATTTCGCATGTTCTTATTAAAAAAACGTGTATCTTATTAA
GAGGCTTGGGGAAGTTTCAATTTTTATTGAAAAGTTCACCGAATCATCGA
AATAAAATTTGGGTCTTATCTCTTAGCGAATGAAAACATTTATTGTAAAC
TTTTAGGGATGAAAAGAACACGCGAGCACGAAATTTTGGATAAGAGAAGG
GAAATTCGAAAAAAAGTTTGTTGACAGGAAATTGAAAGGCAACACATGAT
ATTTGGAATTTTACCTAGAATTCAAAGCATGAATATCAAATCTTGATTTT
TTATATTACTAAATATTTCTTCAATTTCTTTATGATTTCTCTATATAATT
CTTGCCAGGCCAGGCAAGCGGTTTAGAAGCGTAAAATAGAAATTGGACGT
AAAAATGGAGAAGGGGATAAGAAGAAGAACTACACGTTTTTTTTTATAAG
AACGTCAAAAATTTTAGAAACCTTCGGATGTTCTTAGATTTTTAGATTTG
AAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCA
TTTTGATGTAATTTCTTAAGAAATTGCATATTTTTAAGTCTCTAAAGCCT
TTAGTATGTTCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTATG
TTCTTAAATAGTTTGTTCTTATAAAAAAAAAGTGTAGACTAGACGACAAT
TTTTTCGGGAGAAAAGAAAATCTTCACTTTACGACGTAGGTGTGAAATTT
TTCCTTTTCATGATCTTCCTCCTAGCAAAGGAATTGTCTGGATGAATTTA
ATATTTTCTACTTTATATTCATTTCTTCTTTAGATTTTCAAGCATATGAA
ACGCGGAGAAGATAATAAACCTATTGAAATCCGTTAAATAAAAGCAGATG
CGAAAAGAATCGAAGAGAAGAGACTAGTTCTTCCCCTTATAACAAATCGA
GACAACGCGGATGTTAAAAAACTGAAGAATTTTGCTGAACTGAAATTTAC
ACGCACAAAATTATTGAGATCAATATTTGGATGATAAACTGTTTATGTGT
TTATTTTGTTTTGGTTGTTTAGGTTTGTTTATTCCCAAGTGAGGCTCACA
CACTTTGCCGATCAGTCAAGCGAAACTAGAGATTTTTGGTAAATCACGAA
TGAGGGAAATCGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCGA
ACCCTTGGTAGCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCTT
TCGTACCAAGGGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACAG
TTGATGATTCCATTGAAGAGAAAACTTTAAAAATTGATGAAGTGAATGGA
AAAGAAGTTGTTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGGA
TTGTGAAGAAAAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAGA
GGGAGGGAAAATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCATC
GATGAAGATTTGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTAG
AAACATGAAACGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGAT
GCGAGTTGGAAAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAACT
CGACTGAAGAAAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGAT
TGAAAGGAAAGATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAGC
AACATCAGAAAGATCTTGAGATGTATAAAACGAAAATTGAAGAAGAATTC
AATACTAAATACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTGC
GATCGAGAATGTTCAACGCATTATACAAAACAATGAACAAACGTTTGGGA
ATTTACACGAATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGAT
CTCATCCTTAAGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTAT
CGGAGGAGGACTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGTA
GTGAAGAAAGTGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCGT
AGTTTTGAATACGAGAGTCGCTCTGATGACGATATACAACACGAAATGGC
GGATGTGTATCGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCAG
AAAAAGATGAAGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGAA
CGTGAAGTGCGAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACGC
TTGGCGTGATACAATCGAAGATCTTGAACGCGAGATCAATATTTTGAAAT
TTGAGCGAGAGCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAATG
AGAACGGAATTCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCGA
AACACAAACTATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTTA
TGAAAGAGAAGAAAGTTTGCGTCTCTGACTAGTTAGATTATATACGATTT
TTAACCTTCTGTCTCAAGTTTTATCTTTAAAAGTCTAATCTCAAGAAATT
CTAATTAAGTTGAAATCGCGTTCTTTTAACGAGACATTCAAGGTTGTTTT
AAAGGTTATTTGGGTTATATTTGAGGGTTTTATGTTGTGTTCATTACTGT
GTTTTAACTTTTAATTCTAATTTTAATTACAATATTTTATAGCAATGTTC
TTAATTTTAAATTTTATTGTGAGATTTTATTTTTTGAAAAGAGATAGTAA
GTATTAAGTTAGATAGAGAATTTATTTTCAAATTTGAAATAATTTTAATT
TAATAAATGTGAGA Coding sequence (CDS) from alignment at scaffold_65:119064..124477- >TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=CDS|length=1383bp|location=Sequence derived from alignment at scaffold_65:119064..124477- (Clytia hemisphaerica) ATGAGGGAAATCGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCG AACCCTTGGTAGCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCT TTCGTACCAAGGGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACA GTTGATGATTCCATTGAAGAGAAAACTTTAAAAATTGATGAAGTGAATGG AAAAGAAGTTGTTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGG ATTGTGAAGAAAAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAG AGGGAGGGAAAATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCAT CGATGAAGATTTGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTA GAAACATGAAACGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGA TGCGAGTTGGAAAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAAC TCGACTGAAGAAAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGA TTGAAAGGAAAGATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAG CAACATCAGAAAGATCTTGAGATGTATAAAACGAAAATTGAAGAAGAATT CAATACTAAATACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTG CGATCGAGAATGTTCAACGCATTATACAAAACAATGAACAAACGTTTGGG AATTTACACGAATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGA TCTCATCCTTAAGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTA TCGGAGGAGGACTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGT AGTGAAGAAAGTGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCG TAGTTTTGAATACGAGAGTCGCTCTGATGACGATATACAACACGAAATGG CGGATGTGTATCGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCA GAAAAAGATGAAGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGA ACGTGAAGTGCGAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACG CTTGGCGTGATACAATCGAAGATCTTGAACGCGAGATCAATATTTTGAAA TTTGAGCGAGAGCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAAT GAGAACGGAATTCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCG AAACACAAACTATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTT ATGAAAGAGAAGAAAGTTTGCGTCTCTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071944-exon-scaffold_65-1575043694:124205..124477 | TCONS_00071944-exon-scaffold_65-1575043694:124205..124477 | Clytia hemisphaerica | exon |
TCONS_00071944-exon-scaffold_65-1575043694:119064..121094 | TCONS_00071944-exon-scaffold_65-1575043694:119064..121094 | Clytia hemisphaerica | exon |
TCONS_00071944-exon-scaffold_65-1510915933:124205..124477 | TCONS_00071944-exon-scaffold_65-1510915933:124205..124477 | Clytia hemisphaerica | exon |
TCONS_00071944-exon-scaffold_65-1510915933:119064..121094 | TCONS_00071944-exon-scaffold_65-1510915933:119064..121094 | Clytia hemisphaerica | exon |
TCONS_00071944-exon-scaffold_65-1491911889:124205..124477 | TCONS_00071944-exon-scaffold_65-1491911889:124205..124477 | Clytia hemisphaerica | exon |
TCONS_00071944-exon-scaffold_65-1491911889:119064..121094 | TCONS_00071944-exon-scaffold_65-1491911889:119064..121094 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_65 | supercontig | scaffold_65:119064..124477 - |
Blast
The following BLAST results are available for this feature:
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