TCONS_00071944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071944
Unique NameTCONS_00071944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=transcript|length=2304bp
AAAGTCAGCAGTAACGCGTCAACCTCCTCTTCTTACTCTGCTCTTACGCA
TAGTACCATCCCTTGTTTCCAAAGTACCAATTTAACTGACACCATCCAGA
GATTATATCATTTCACCCCAAATGTACAGTACTTCACTATTTCATTATCA
ACCGATAGAATCATTAGTGTTTGATGCCCTTGCATAGTATCACATTTTGG
ATTTCAATGCAACGGTTTCTTAACGTCAAAACATATGTCATTTTGAAAAG
GAGAAGAACAGAGATTGtaaaagATTTTCAAGCATATGAAACGCGGAGAA
GATAATAAACCTATTGAAATCCGTTAAATAAAAGCAGATGCGAAAAGAAT
CGAAGAGAAGAGACTAGTTCTTCCCCTTATAACAAATCGAGACAACGCGG
ATGTTAAAAAACTGAAGAATTTTGCTGAACTGAAATTTACACGCACAAAA
TTATTGAGATCAATATTTGGATGATAAACTGTTTAtgtgtttattttgtt
ttggttgtttaGGTTTGTTTATTCCCAAGTGAGGCTCACACACTTTGCCG
ATCAGTCAAGCGAAACTAGAGATTTTTGGTAAATCACGAATGAGGGAAAT
CGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCGAACCCTTGGTA
GCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCTTTCGTACCAAG
GGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACAGTTGATGATTC
CATTGAagagaaaactttaaaaattgatGAAGTGAATGGAAAAGAAGTTG
TTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGGATTGTGAAGAA
AAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAGAGGGAGGGAAA
ATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCATCGATGAAGATT
TGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTAGAAACATGAAA
CGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGATGCGAGTTGGA
AAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAACTCGACTGAAGA
AAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGATTGAAAGGAAA
GATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAGCAACATCAGAA
AGATCTTGAGATGTATAAAacgaaaattgaagaagaattCAATACTAAAT
ACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTGCGATCGAGAAT
GTTCAACGCATTATACAAAACAATGAACAAACGTTTGGGAATTTACACGA
ATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGATCTCATCCTTA
AGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTATCGGAGGAGGA
CTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGTAGTGAAGAAAG
TGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCGTAGTTTTGAAT
ACGAGAGTCGCTCTGATGACGATATACAACACGAAATGGCGGATGTGTAT
CGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCAGAAAAAGATGA
AGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGAACGTGAAGTGC
GAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACGCTTGGCGTGAT
ACAATCGAAGATCTTGAACGCGagatcaatattttgaaatttgagcgAGA
GCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAATGAGAACGGAAT
TCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCGAAACACAAACT
ATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTTATGAAAGAGAA
GAAAGTTTGCGTCTCTGACTAGTTAGATTATATACGATTTTTAACCTTCT
GTCTCAAGTTTTATCTTTAAAAGTCTAATCTCAAGAAATTCTAATTAAGT
TGAAATCGCGTTCTTTTAACGAGACATTCAAGGTTGTTTTAAAGGTTATT
TGGGTTATATTTGAGGGTTTTATGTTGTGTTCATTACTGTGTTTTAACTT
TTAATTCTAATTTtaattacaatattttatagcaatgttcttaattttaa
attttattgtgagattttattttttgaaaagagatagTAAGTATTAAGTT
AGATagagaatttattttcaaatttgaaataattttaatttaataaatgt
gaga
Run BLAST on NCBI

protein sequence of TCONS_00071944-protein

>TCONS_00071944-protein ID=TCONS_00071944-protein|Name=TCONS_00071944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=460bp
MREIERNTFHQKGKSSRTLGSMVRFPNLMNRSIFRTKGLSPEVGKVNHKT
VDDSIEEKTLKIDEVNGKEVVSGNIPSLQTHSVDCEEKLTLKTGLLLDQE
REGKCSGNDKMELKGCIDEDLEGRTVDELQEQIRNMKRTYLFEQNHLMEG
CELEKFELRESYEEEKTRLKKAFENEKTELLKEIERKDKMLEKLADVLKE
QHQKDLEMYKTKIEEEFNTKYILCEKFNKTLQTAIENVQRIIQNNEQTFG
NLHEFKTLKECKTQMNDLILKKDSGVFNAQNETIGGGLIRSISDPTQQRR
SEESAVVKCKLNETKARSFEYESRSDDDIQHEMADVYRKQKAELVKLFTA
EKDEDRQRLRDEKERFEREVRTEYDSRMIVERNAWRDTIEDLEREINILK
FEREQLDRNYCLGMDEMRTEFEVEKQQMYRRFSETQTMYQNKLRDFRKDV
MKEKKVCVSD
Run BLAST on NCBI

transcript from alignment at scaffold_65:119064..124477-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=transcript|length=5414bp|location=Sequence derived from alignment at scaffold_65:119064..124477- (Clytia hemisphaerica)
AAAGTCAGCAGTAACGCGTCAACCTCCTCTTCTTACTCTGCTCTTACGCA TAGTACCATCCCTTGTTTCCAAAGTACCAATTTAACTGACACCATCCAGA GATTATATCATTTCACCCCAAATGTACAGTACTTCACTATTTCATTATCA ACCGATAGAATCATTAGTGTTTGATGCCCTTGCATAGTATCACATTTTGG ATTTCAATGCAACGGTTTCTTAACGTCAAAACATATGTCATTTTGAAAAG GAGAAGAACAGAGATTGTAAAAGGTAATTTTTTGTTTGCAATTATAGCCA ACGGCACTGTGGACTGTTGCAACTGTGCACCTCTCATAACAGATACAAAA TCCTTCGAAGTTTTAGGCTACTACTGTAACTACTAGAAGCCATTTATTTG GCGTATAGTTTTGATTACCCATTACGTTTTGCCGAGACTTTGTGCAAGGC TATGGACCGTTGTTTTGAAAAAGTAGAAATTTCGTAGAAATTGGACTCGC CTTGGATTCCAGGGCAAACAACGTTTTTAATTTGATGTTTTTGATAATGT ACTAGCCCTGGTGTTGAATGGCTTAAAATTAATGGCTTAAAATATCTGAG ATTGAGATTGGTGACGAAATCTTGAACTCAATCTTCACCCAACTGCTTTG TTCTAAAAAAAGTAAAAGGAGTTGTTAGGCAAACTCGAACCCAGTCCCTT AGTTCGTTTTTTTATGATTCAGATAGTGCTCAAAATTGTATCACGTCCAA CTGTGAAATCAAAAAGTGGTGTATGTGTATCTCTGACGATCTCTGAAACG AGATTGAACTTTTTGATTTTGTTCCCAGACCTCTTGGTAATCGAGTTGGG TGGTATGTAAACCTTAAGTGTAGGAATTATCATGGTAGATGATTTAGAAG ATGGATATAGAAGAATGGTTATTTACATCGAGGGTACTAAATCTTGTATG TAATATTTCCATTTGATTCTCACCCGTTTTAAAATTTCATAATATCAAGA ATCGATTGATTAGCCACCTTTATCAATATTTGACAACAAAAATTTCCCTT TTTCGAAATATTATTTGTGTTAAATATTTGAACATCTCTCAATGTTCCCT TAGAAATTTCTATAGTTCGCCCTTCGTATGAAATTTTTCACAAAACGACA AATAAGTGGTGGAAAATGATGATCAATGGTTGAAGTAGTCATGTGCAGGG TTTTGGGACATTAGGAAATTAAAAATACTGTTTTTGTGTTTGATTTGACC GAAGATACTGGGTTAAAGGACATCATTTATCGTATCGCCTATCCTTTGCT TACTCAGCATTTTTCAACAAAAGAAATGTCAAGTTTCTTACCTTTCATCC TTTCATTCAGCGCTGCGTGAACACAAATTTTGAGTGATTCTAAAACAACA TGTCTCATATCTAAAGTTAGTTTATTCTATATGACGTCTGATGCAGAATT TTGCCAGGTAGCGTCAAAGACTGAACCTGACCTGGTTGACCTGAACCCCG GACCTCGTTTTCAGGGATTGTTGGGATTTTTTCCAAGGGTTAAAAGTCAC CTGAAGAAATAAGAATTTTTAAATTAATTTATTCAAATCTCAAAACCCAG TGGGGATTCTTTGCTTTTCCAAGTCGGGATTATACTTATTCAGTCTAGAG GTTAGATTATTTTGACCGCGNAAGAATTTTTAAATTAAGTTATTCAAATC TCAAAACCCAGTGGGGATTCTTTGCTTTTCCAAGTCGGGATTATACTTAT TCAGTCTAGAGGTTAGATTATTTTGACCGCGATATCTTAAACCATGAACA TACTTGAACACATTTTTCATTTTCTAAAAGCTGTATGTGTAATCGCCATT AATTGTTGTTCAATCTCCAAACCACAGGAGATTTAATTTATGAATAACGA TTAAAAAAACACGCGAAAATAAACGCATGTTGTTAATTAGTCTCAAATAT CAAATAATTGTTTGTGCATTGGATTTTTCGTCATTTACTAATTTGAAGAC GGATATGAGACATGTTGTTGTTTTCGAAAAATCTGCAAACCTCTCTGAAA ATTTCAGGACAAAATTGCAGACGAATGTCACCCTTTACATTAGAGTGCAG TATTGCAGTTGTATGAATGAGAGTTTTTTTGGGTGAGCCTAAAATTGAAA TTTGTAGTTTAGTTTCATATGACTATGTTCGTACAGACAGCTCTTTCTCG GCTGAATAAGCGTGAAAATCTTTCAAGGTGAATTCCACTGGGGAACTGAA AGACAGCAGTATTTCTACTGCTGCAAAAGTGTTTTGCTGAATGTTGGAAA GGCTGAAGATTGAGCAGCATTATTTTGTTAACTAAATCTCTACACGTTCT TTTTTATAAGAACATAAGGCTGTGAAGGCCAAGATGTTAAGGACAAGTTA AGAGGTTTTAGGCTTTGCAGACTCTAGAACATCGAATTTCATAGGAAAAT GGATAAAAATACTAGAAAAATGGCAAAAATAGGCACATGTTAAGAACATC TCGAAGAACATTTTTAGGCTTCAAAACTCAAAAAGTTGAGAACATCCCAA GGCTTCAAAAATTTCGCATGTTCTTATTAAAAAAACGTGTATCTTATTAA GAGGCTTGGGGAAGTTTCAATTTTTATTGAAAAGTTCACCGAATCATCGA AATAAAATTTGGGTCTTATCTCTTAGCGAATGAAAACATTTATTGTAAAC TTTTAGGGATGAAAAGAACACGCGAGCACGAAATTTTGGATAAGAGAAGG GAAATTCGAAAAAAAGTTTGTTGACAGGAAATTGAAAGGCAACACATGAT ATTTGGAATTTTACCTAGAATTCAAAGCATGAATATCAAATCTTGATTTT TTATATTACTAAATATTTCTTCAATTTCTTTATGATTTCTCTATATAATT CTTGCCAGGCCAGGCAAGCGGTTTAGAAGCGTAAAATAGAAATTGGACGT AAAAATGGAGAAGGGGATAAGAAGAAGAACTACACGTTTTTTTTTATAAG AACGTCAAAAATTTTAGAAACCTTCGGATGTTCTTAGATTTTTAGATTTG AAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCA TTTTGATGTAATTTCTTAAGAAATTGCATATTTTTAAGTCTCTAAAGCCT TTAGTATGTTCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTATG TTCTTAAATAGTTTGTTCTTATAAAAAAAAAGTGTAGACTAGACGACAAT TTTTTCGGGAGAAAAGAAAATCTTCACTTTACGACGTAGGTGTGAAATTT TTCCTTTTCATGATCTTCCTCCTAGCAAAGGAATTGTCTGGATGAATTTA ATATTTTCTACTTTATATTCATTTCTTCTTTAGATTTTCAAGCATATGAA ACGCGGAGAAGATAATAAACCTATTGAAATCCGTTAAATAAAAGCAGATG CGAAAAGAATCGAAGAGAAGAGACTAGTTCTTCCCCTTATAACAAATCGA GACAACGCGGATGTTAAAAAACTGAAGAATTTTGCTGAACTGAAATTTAC ACGCACAAAATTATTGAGATCAATATTTGGATGATAAACTGTTTATGTGT TTATTTTGTTTTGGTTGTTTAGGTTTGTTTATTCCCAAGTGAGGCTCACA CACTTTGCCGATCAGTCAAGCGAAACTAGAGATTTTTGGTAAATCACGAA TGAGGGAAATCGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCGA ACCCTTGGTAGCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCTT TCGTACCAAGGGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACAG TTGATGATTCCATTGAAGAGAAAACTTTAAAAATTGATGAAGTGAATGGA AAAGAAGTTGTTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGGA TTGTGAAGAAAAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAGA GGGAGGGAAAATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCATC GATGAAGATTTGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTAG AAACATGAAACGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGAT GCGAGTTGGAAAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAACT CGACTGAAGAAAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGAT TGAAAGGAAAGATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAGC AACATCAGAAAGATCTTGAGATGTATAAAACGAAAATTGAAGAAGAATTC AATACTAAATACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTGC GATCGAGAATGTTCAACGCATTATACAAAACAATGAACAAACGTTTGGGA ATTTACACGAATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGAT CTCATCCTTAAGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTAT CGGAGGAGGACTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGTA GTGAAGAAAGTGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCGT AGTTTTGAATACGAGAGTCGCTCTGATGACGATATACAACACGAAATGGC GGATGTGTATCGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCAG AAAAAGATGAAGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGAA CGTGAAGTGCGAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACGC TTGGCGTGATACAATCGAAGATCTTGAACGCGAGATCAATATTTTGAAAT TTGAGCGAGAGCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAATG AGAACGGAATTCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCGA AACACAAACTATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTTA TGAAAGAGAAGAAAGTTTGCGTCTCTGACTAGTTAGATTATATACGATTT TTAACCTTCTGTCTCAAGTTTTATCTTTAAAAGTCTAATCTCAAGAAATT CTAATTAAGTTGAAATCGCGTTCTTTTAACGAGACATTCAAGGTTGTTTT AAAGGTTATTTGGGTTATATTTGAGGGTTTTATGTTGTGTTCATTACTGT GTTTTAACTTTTAATTCTAATTTTAATTACAATATTTTATAGCAATGTTC TTAATTTTAAATTTTATTGTGAGATTTTATTTTTTGAAAAGAGATAGTAA GTATTAAGTTAGATAGAGAATTTATTTTCAAATTTGAAATAATTTTAATT TAATAAATGTGAGA

Coding sequence (CDS) from alignment at scaffold_65:119064..124477-

>TCONS_00071944 ID=TCONS_00071944|Name=TCONS_00071944|organism=Clytia hemisphaerica|type=CDS|length=1383bp|location=Sequence derived from alignment at scaffold_65:119064..124477- (Clytia hemisphaerica)
ATGAGGGAAATCGAAAGAAACACTTTTCACCAGAAGGGGAAAAGTAGTCG
AACCCTTGGTAGCATGGTCAGATTCCCTAACTTGATGAATCGGTCCATCT
TTCGTACCAAGGGGCTTTCCCCTGAGGTTGGGAAAGTGAATCATAAAACA
GTTGATGATTCCATTGAAGAGAAAACTTTAAAAATTGATGAAGTGAATGG
AAAAGAAGTTGTTTCGGGGAATATTCCTTCTTTACAAACGCACAGCGTGG
ATTGTGAAGAAAAACTGACTTTGAAAACTGGATTGCTCTTGGATCAAGAG
AGGGAGGGAAAATGTTCAGGGAACGATAAAATGGAACTCAAAGGTTGCAT
CGATGAAGATTTGGAAGGGAGAACAGTCGACGAACTTCAAGAACAAATTA
GAAACATGAAACGAACTTATTTATTTGAACAGAATCATTTAATGGAAGGA
TGCGAGTTGGAAAAGTTCGAGTTACGCGAAAGTTATGAGGAAGAGAAAAC
TCGACTGAAGAAAGCGTTTGAGAATGAGAAAACTGAATTGTTGAAAGAGA
TTGAAAGGAAAGATAAGATGTTGGAAAAGCTAGCAGACGTTCTGAAAGAG
CAACATCAGAAAGATCTTGAGATGTATAAAACGAAAATTGAAGAAGAATT
CAATACTAAATACATTTTATGTGAGAAATTCAACAAAACTCTACAAACTG
CGATCGAGAATGTTCAACGCATTATACAAAACAATGAACAAACGTTTGGG
AATTTACACGAATTCAAAACTCTTAAAGAATGTAAAACGCAGATGAATGA
TCTCATCCTTAAGAAAGATTCAGGGGTGTTCAATGCTCAAAATGAGACTA
TCGGAGGAGGACTTATTCGTTCCATTTCTGATCCAACGCAACAGAGGCGT
AGTGAAGAAAGTGCAGTTGTAAAATGTAAATTGAACGAAACGAAGGCTCG
TAGTTTTGAATACGAGAGTCGCTCTGATGACGATATACAACACGAAATGG
CGGATGTGTATCGCAAACAAAAAGCGGAACTCGTTAAATTATTCACTGCA
GAAAAAGATGAAGATCGTCAACGTTTGAGGGATGAGAAAGAGCGTTTCGA
ACGTGAAGTGCGAACAGAATATGATTCGCGTATGATCGTTGAGCGGAACG
CTTGGCGTGATACAATCGAAGATCTTGAACGCGAGATCAATATTTTGAAA
TTTGAGCGAGAGCAGTTGGATCGGAATTATTGTTTGGGAATGGATGAAAT
GAGAACGGAATTCGAAGTGGAAAAACAACAAATGTACAGACGTTTCAGCG
AAACACAAACTATGTATCAGAATAAATTACGAGATTTTCGTAAAGATGTT
ATGAAAGAGAAGAAAGTTTGCGTCTCTGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044667XLOC_044667Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071944-proteinTCONS_00071944-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071944-exon-scaffold_65-1575043694:124205..124477TCONS_00071944-exon-scaffold_65-1575043694:124205..124477Clytia hemisphaericaexon
TCONS_00071944-exon-scaffold_65-1575043694:119064..121094TCONS_00071944-exon-scaffold_65-1575043694:119064..121094Clytia hemisphaericaexon
TCONS_00071944-exon-scaffold_65-1510915933:124205..124477TCONS_00071944-exon-scaffold_65-1510915933:124205..124477Clytia hemisphaericaexon
TCONS_00071944-exon-scaffold_65-1510915933:119064..121094TCONS_00071944-exon-scaffold_65-1510915933:119064..121094Clytia hemisphaericaexon
TCONS_00071944-exon-scaffold_65-1491911889:124205..124477TCONS_00071944-exon-scaffold_65-1491911889:124205..124477Clytia hemisphaericaexon
TCONS_00071944-exon-scaffold_65-1491911889:119064..121094TCONS_00071944-exon-scaffold_65-1491911889:119064..121094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:119064..124477 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.483787 0 0.18259 0 8.48139 8.59244 1.65863 2.52328 0.271786 1.66211 0 0.3222 0.214501 0 0 0.294806 0.242118 0.248163 0 0.358769 0.311835 1.36892 0.924502 0.840506 3.11653 1.69976 5.18476 2.40319 0 0.364722
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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