TCONS_00071943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071943
Unique NameTCONS_00071943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071943 ID=TCONS_00071943|Name=TCONS_00071943|organism=Clytia hemisphaerica|type=transcript|length=2084bp
ACCCTTTACATTAGAGTGCAGTATTGCAGTTGTATGAATGAGAGTTTTTT
TGGATTTTCAAGCATATGAAACGCGGAGAAGATAATAAACCTATTGAAAT
CCGTTAAATAAAAGCAGATGCGAAAAGAATCGAAGAGAAGAGACTAGTTC
TTCCCCTTATAACAAATCGAGACAACGCGGATGTTAAAAAACTGAAGAAT
TTTGCTGAACTGAAATTTACACGCACAAAATTATTGAGATCAATATTTGG
ATGATAAACTGTTTAtgtgtttattttgttttggttgtttaGGTTTGTTT
ATTCCCAAGTGAGGCTCACACACTTTGCCGATCAGTCAAGCGAAACTAGA
GATTTTTGGTAAATCACGAATGAGGGAAATCGAAAGAAACACTTTTCACC
AGAAGGGGAAAAGTAGTCGAACCCTTGGTAGCATGGTCAGATTCCCTAAC
TTGATGAATCGGTCCATCTTTCGTACCAAGGGGCTTTCCCCTGAGGTTGG
GAAAGTGAATCATAAAACAGTTGATGATTCCATTGAagagaaaactttaa
aaattgatGAAGTGAATGGAAAAGAAGTTGTTTCGGGGAATATTCCTTCT
TTACAAACGCACAGCGTGGATTGTGAAGAAAAACTGACTTTGAAAACTGG
ATTGCTCTTGGATCAAGAGAGGGAGGGAAAATGTTCAGGGAACGATAAAA
TGGAACTCAAAGGTTGCATCGATGAAGATTTGGAAGGGAGAACAGTCGAC
GAACTTCAAGAACAAATTAGAAACATGAAACGAACTTATTTATTTGAACA
GAATCATTTAATGGAAGGATGCGAGTTGGAAAAGTTCGAGTTACGCGAAA
GTTATGAGGAAGAGAAAACTCGACTGAAGAAAGCGTTTGAGAATGAGAAA
ACTGAATTGTTGAAAGAGATTGAAAGGAAAGATAAGATGTTGGAAAAGCT
AGCAGACGTTCTGAAAGAGCAACATCAGAAAGATCTTGAGATGTATAAAa
cgaaaattgaagaagaattCAATACTAAATACATTTTATGTGAGAAATTC
AACAAAACTCTACAAACTGCGATCGAGAATGTTCAACGCATTATACAAAA
CAATGAACAAACGTTTGGGAATTTACACGAATTCAAAACTCTTAAAGAAT
GTAAAACGCAGATGAATGATCTCATCCTTAAGAAAGATTCAGGGGTGTTC
AATGCTCAAAATGAGACTATCGGAGGAGGACTTATTCGTTCCATTTCTGA
TCCAACGCAACAGAGGCGTAGTGAAGAAAGTGCAGTTGTAAAATGTAAAT
TGAACGAAACGAAGGCTCGTAGTTTTGAATACGAGAGTCGCTCTGATGAC
GATATACAACACGAAATGGCGGATGTGTATCGCAAACAAAAAGCGGAACT
CGTTAAATTATTCACTGCAGAAAAAGATGAAGATCGTCAACGTTTGAGGG
ATGAGAAAGAGCGTTTCGAACGTGAAGTGCGAACAGAATATGATTCGCGT
ATGATCGTTGAGCGGAACGCTTGGCGTGATACAATCGAAGATCTTGAACG
CGagatcaatattttgaaatttgagcgAGAGCAGTTGGATCGGAATTATT
GTTTGGGAATGGATGAAATGAGAACGGAATTCGAAGTGGAAAAACAACAA
ATGTACAGACGTTTCAGCGAAACACAAACTATGTATCAGAATAAATTACG
AGATTTTCGTAAAGATGTTATGAAAGAGAAGAAAGTTTGCGTCTCTGACT
AGTTAGATTATATACGATTTTTAACCTTCTGTCTCAAGTTTTATCTTTAA
AAGTCTAATCTCAAGAAATTCTAATTAAGTTGAAATCGCGTTCTTTTAAC
GAGACATTCAAGGTTGTTTTAAAGGTTATTTGGGTTATATTTGAGGGTTT
TATGTTGTGTTCATTACTGTGTTTTAACTTTTAATTCTAATTTtaattac
aatattttatagcaatgttcttaattttaaattttattgtgagattttat
tttttgaaaagagatagTAAGTATTAAGTTAGATagagaatttattttca
aatttgaaataattttaatttaataaatgtgaga
Run BLAST on NCBI

transcript from alignment at scaffold_65:119064..122398-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071943 ID=TCONS_00071943|Name=TCONS_00071943|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at scaffold_65:119064..122398- (Clytia hemisphaerica)
ACCCTTTACATTAGAGTGCAGTATTGCAGTTGTATGAATGAGAGTTTTTT
TGGGTGAGCCTAAAATTGAAATTTGTAGTTTAGTTTCATATGACTATGTT
CGTACAGACAGCTCTTTCTCGGCTGAATAAGCGTGAAAATCTTTCAAGGT
GAATTCCACTGGGGAACTGAAAGACAGCAGTATTTCTACTGCTGCAAAAG
TGTTTTGCTGAATGTTGGAAAGGCTGAAGATTGAGCAGCATTATTTTGTT
AACTAAATCTCTACACGTTCTTTTTTATAAGAACATAAGGCTGTGAAGGC
CAAGATGTTAAGGACAAGTTAAGAGGTTTTAGGCTTTGCAGACTCTAGAA
CATCGAATTTCATAGGAAAATGGATAAAAATACTAGAAAAATGGCAAAAA
TAGGCACATGTTAAGAACATCTCGAAGAACATTTTTAGGCTTCAAAACTC
AAAAAGTTGAGAACATCCCAAGGCTTCAAAAATTTCGCATGTTCTTATTA
AAAAAACGTGTATCTTATTAAGAGGCTTGGGGAAGTTTCAATTTTTATTG
AAAAGTTCACCGAATCATCGAAATAAAATTTGGGTCTTATCTCTTAGCGA
ATGAAAACATTTATTGTAAACTTTTAGGGATGAAAAGAACACGCGAGCAC
GAAATTTTGGATAAGAGAAGGGAAATTCGAAAAAAAGTTTGTTGACAGGA
AATTGAAAGGCAACACATGATATTTGGAATTTTACCTAGAATTCAAAGCA
TGAATATCAAATCTTGATTTTTTATATTACTAAATATTTCTTCAATTTCT
TTATGATTTCTCTATATAATTCTTGCCAGGCCAGGCAAGCGGTTTAGAAG
CGTAAAATAGAAATTGGACGTAAAAATGGAGAAGGGGATAAGAAGAAGAA
CTACACGTTTTTTTTTATAAGAACGTCAAAAATTTTAGAAACCTTCGGAT
GTTCTTAGATTTTTAGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTT
ATTTTCAGCATTTTTTGAGCATTTTGATGTAATTTCTTAAGAAATTGCAT
ATTTTTAAGTCTCTAAAGCCTTTAGTATGTTCTTAGAATGTTCTTAAATT
TTTGGGCCTCGAAGCCTTATGTTCTTAAATAGTTTGTTCTTATAAAAAAA
AAGTGTAGACTAGACGACAATTTTTTCGGGAGAAAAGAAAATCTTCACTT
TACGACGTAGGTGTGAAATTTTTCCTTTTCATGATCTTCCTCCTAGCAAA
GGAATTGTCTGGATGAATTTAATATTTTCTACTTTATATTCATTTCTTCT
TTAGATTTTCAAGCATATGAAACGCGGAGAAGATAATAAACCTATTGAAA
TCCGTTAAATAAAAGCAGATGCGAAAAGAATCGAAGAGAAGAGACTAGTT
CTTCCCCTTATAACAAATCGAGACAACGCGGATGTTAAAAAACTGAAGAA
TTTTGCTGAACTGAAATTTACACGCACAAAATTATTGAGATCAATATTTG
GATGATAAACTGTTTATGTGTTTATTTTGTTTTGGTTGTTTAGGTTTGTT
TATTCCCAAGTGAGGCTCACACACTTTGCCGATCAGTCAAGCGAAACTAG
AGATTTTTGGTAAATCACGAATGAGGGAAATCGAAAGAAACACTTTTCAC
CAGAAGGGGAAAAGTAGTCGAACCCTTGGTAGCATGGTCAGATTCCCTAA
CTTGATGAATCGGTCCATCTTTCGTACCAAGGGGCTTTCCCCTGAGGTTG
GGAAAGTGAATCATAAAACAGTTGATGATTCCATTGAAGAGAAAACTTTA
AAAATTGATGAAGTGAATGGAAAAGAAGTTGTTTCGGGGAATATTCCTTC
TTTACAAACGCACAGCGTGGATTGTGAAGAAAAACTGACTTTGAAAACTG
GATTGCTCTTGGATCAAGAGAGGGAGGGAAAATGTTCAGGGAACGATAAA
ATGGAACTCAAAGGTTGCATCGATGAAGATTTGGAAGGGAGAACAGTCGA
CGAACTTCAAGAACAAATTAGAAACATGAAACGAACTTATTTATTTGAAC
AGAATCATTTAATGGAAGGATGCGAGTTGGAAAAGTTCGAGTTACGCGAA
AGTTATGAGGAAGAGAAAACTCGACTGAAGAAAGCGTTTGAGAATGAGAA
AACTGAATTGTTGAAAGAGATTGAAAGGAAAGATAAGATGTTGGAAAAGC
TAGCAGACGTTCTGAAAGAGCAACATCAGAAAGATCTTGAGATGTATAAA
ACGAAAATTGAAGAAGAATTCAATACTAAATACATTTTATGTGAGAAATT
CAACAAAACTCTACAAACTGCGATCGAGAATGTTCAACGCATTATACAAA
ACAATGAACAAACGTTTGGGAATTTACACGAATTCAAAACTCTTAAAGAA
TGTAAAACGCAGATGAATGATCTCATCCTTAAGAAAGATTCAGGGGTGTT
CAATGCTCAAAATGAGACTATCGGAGGAGGACTTATTCGTTCCATTTCTG
ATCCAACGCAACAGAGGCGTAGTGAAGAAAGTGCAGTTGTAAAATGTAAA
TTGAACGAAACGAAGGCTCGTAGTTTTGAATACGAGAGTCGCTCTGATGA
CGATATACAACACGAAATGGCGGATGTGTATCGCAAACAAAAAGCGGAAC
TCGTTAAATTATTCACTGCAGAAAAAGATGAAGATCGTCAACGTTTGAGG
GATGAGAAAGAGCGTTTCGAACGTGAAGTGCGAACAGAATATGATTCGCG
TATGATCGTTGAGCGGAACGCTTGGCGTGATACAATCGAAGATCTTGAAC
GCGAGATCAATATTTTGAAATTTGAGCGAGAGCAGTTGGATCGGAATTAT
TGTTTGGGAATGGATGAAATGAGAACGGAATTCGAAGTGGAAAAACAACA
AATGTACAGACGTTTCAGCGAAACACAAACTATGTATCAGAATAAATTAC
GAGATTTTCGTAAAGATGTTATGAAAGAGAAGAAAGTTTGCGTCTCTGAC
TAGTTAGATTATATACGATTTTTAACCTTCTGTCTCAAGTTTTATCTTTA
AAAGTCTAATCTCAAGAAATTCTAATTAAGTTGAAATCGCGTTCTTTTAA
CGAGACATTCAAGGTTGTTTTAAAGGTTATTTGGGTTATATTTGAGGGTT
TTATGTTGTGTTCATTACTGTGTTTTAACTTTTAATTCTAATTTTAATTA
CAATATTTTATAGCAATGTTCTTAATTTTAAATTTTATTGTGAGATTTTA
TTTTTTGAAAAGAGATAGTAAGTATTAAGTTAGATAGAGAATTTATTTTC
AAATTTGAAATAATTTTAATTTAATAAATGTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044667XLOC_044667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071943-exon-scaffold_65-1575043694:122346..122398TCONS_00071943-exon-scaffold_65-1575043694:122346..122398Clytia hemisphaericaexon
TCONS_00071943-exon-scaffold_65-1575043694:119064..121094TCONS_00071943-exon-scaffold_65-1575043694:119064..121094Clytia hemisphaericaexon
TCONS_00071943-exon-scaffold_65-1510915933:122346..122398TCONS_00071943-exon-scaffold_65-1510915933:122346..122398Clytia hemisphaericaexon
TCONS_00071943-exon-scaffold_65-1510915933:119064..121094TCONS_00071943-exon-scaffold_65-1510915933:119064..121094Clytia hemisphaericaexon
TCONS_00071943-exon-scaffold_65-1491911889:122346..122398TCONS_00071943-exon-scaffold_65-1491911889:122346..122398Clytia hemisphaericaexon
TCONS_00071943-exon-scaffold_65-1491911889:119064..121094TCONS_00071943-exon-scaffold_65-1491911889:119064..121094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:119064..122398 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216307	0.79341	0.138768	0.419198	38.0355	25.9276	23.568	21.458	10.0126	13.232	8.83736	9.50704	3.87532	3.03193	4.70597	8.88324	5.70947	6.4635	4.92791	5.51356	2.35914	1.57578	6.47349	6.85181	12.3636	8.526	0.808551	1.44562	1.93212	2.58807
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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