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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071942 ID=TCONS_00071942|Name=TCONS_00071942|organism=Clytia hemisphaerica|type=transcript|length=1873bp
atattaacaaaaaataaatatctttgagCCAAGTAAAGGGCTAAGATTCG
ATAAGACCGACCGTAGCGAACGTAATTTGAAAAGTGTAGTAGAATGGTTG
TAATTCgataaattaatcaaaattaatcaaaattaaTCGACCTAATAGAC
AAAGGAAAAGATTGAGAGACTTCTTCTAAGTTAACCAAAAACACTATTGA
CctgtcaaaatttccaaaaaggtgaaaaataaTTCCGTCTTATCAAACCA
GGGACGGCGTTAGAGGTATTGCATCTTGTAAATGAAGGTCAGAAACTGCT
AAAATGTTCGGCGACCGTAGAATTAGAGtatgtttatttttatattttct
caaATGATCTTGTAAATCACATTCACGTTTGGTTGAATTCTTCACCAGTT
GTAGTTCGATGGCGTCCCGCGCGGCCGCTATGTCCGCTCGTTTCAACATC
ACTTTCTGTTCTTGATAATCTCTCATTAATTCTTTCTTCTCATCATTTTC
CACACGGAGTTCCTCTACTCGTTTCACTTTCTTTTGACTAGCCTCGTGTC
TACGTTTTACATGATCGTGGTCGGTCAAGGCTTTACCTACGGATGCGTTT
TGCGAGCGGAAGTTCAAGGCAAACTGGTAACTCCGTCGCGCACGCTCGCT
TTCTTTCGCACGCTGTTCTCTGAATTGGGCTGTCACGTCTTGCAGATCTA
GCTCACGTTGACGATGAACTCGGAGCCCTTCAAGAATTTTGATACGATCA
GAATCCTTGTTTGCGCATGCGTTCTTTTTATGTGCCTTTTGACTTCGTTT
GACTTTATTTCGAGTCATTTTCTCTTGATGTTTGACTTTCTTGACCACGT
GTGTTTTACGAAGGAGCACTTCAGCTTTATCGCGGTCGTTGTATGCTTTC
TCGACGGCCTTGAAAGCTGAGAAATTCATTCCAGTTTGTGTTTTCATGAA
AGCTCGTTGTAAATGACTACTTTGGTAGGTCTTCTTGATTGATGGGACAA
TCGCactcttcatcttcatctttcGATCGATATCTCGAGTCGCTGTTCGA
ATGTCATCTGCTCCCTCTACGGTCCGCATAATGAGTTCTTccaatggatc
atgggtaatgaCGTCAGGTTTTCGGATGGATAATCGGAATTGAGTTTCTT
CATCGTTATCATTCTGAATGCGGTTAGGAGTTTCGATTTTGCCAAGGAAA
GCATATTGCGTTTGATATTTCCCTATGGTGGTAGGAGGAGCAGATTTCGG
CTGTTTATGAGAAAGGAGGGTGGACACACCTAAATCTTCAGCAATTTGTT
CCAAATTATCCGGTGTTTTCCTTGGTAGATGAGCAGATCTCTGAGCACGA
CTAGCAGTTGGTATTTGTCCTGTTTGGCGAGTGATGACTGAGTCTTGCAA
ACGGTCCGATACTGTGATTCGGTGATTATGTTTGGAACCAGAAAGCTTTG
ATGCTCTATTTAAGATCTGAGTCGTTTGTCCTTCAAGCTTCTGTAAATCC
ACACTGATATGTCGATGAATGGGACGCGGTAGTCCGGAGCGTAAGCAGGT
GCCATGCACCCGGGCATCATGGCTTTCAGCATGCGGTAATCGATAATGCA
AGGACTTGAAAGAGGCGCTACTTTTGGCGTGTTTTGAGCGCCGCAGACGA
AGGTAGGTTTCATAGTCCAGTCGCATAGAGGAGAAACTTTGATACAAATG
GTCTTGGAATTGAAGGTTGGGAGAGGTTGGCGGTGGTCGCGGATAACCTT
TGCGATCTCGATAAAAACGTTGTATAGAAACAGCAGCCCTTTACGAAATA
GAGAATTCCGTTTTAAAAAGGTAATTACATTACAACAATTTTTCTAATCA
AAATCGAACTCAGTACGAAATTG Run BLAST on NCBI transcript from alignment at scaffold_65:96951..98886- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071942 ID=TCONS_00071942|Name=TCONS_00071942|organism=Clytia hemisphaerica|type=transcript|length=1936bp|location=Sequence derived from alignment at scaffold_65:96951..98886- (Clytia hemisphaerica)
ATATTAACAAAAAATAAATATCTTTGAGCCAAGTAAAGGGCTAAGATTCG
ATAAGACCGACCGTAGCGAACGTAATTTGAAAAGTGTAGTAGAATGGTTG
TAATTCGATAAATTAATCAAAATTAATCAAAATTAATCGACCTAATAGAC
AAAGGAAAAGATTGAGAGACTTCTTCTAAGTTAACCAAAAACACTATTGA
CCTGTCAAAATTTCCAAAAAGGTGAAAAATAATTCCGTCTTATCAAACCA
GGGACGGCGTTAGAGGTATTGCATCTTGTAAATGAAGGTCAGAAACTGCT
AAAATGTTCGGCGACCGTAGAATTAGAGTATGTTTATTTTTATATTTTCT
CAAATGATCTTGTAAATCACATTCACGTTTGGTTGAATTCTTCACCAGTT
GTAGTTCGATGGCGTCCCGCGCGGCCGCTATGTCCGCTCGTTTCAACATC
ACTTTCTGTTCTTGATAATCTCTCATTAATTCTTTCTTCTCATCATTTTC
CACACGGAGTTCCTCTACTCGTTTCACTTTCTTTTGACTAGCCTCGTGTC
TACGTTTTACATGATCGTGGTCGGTCAAGGCTTTACCTACGGATGCGTTT
TGCGAGCGGAAGTTCAAGGCAAACTGGTAACTCCGTCGCGCACGCTCGCT
TTCTTTCGCACGCTGTTCTCTGAATTGGGCTGTCACGTCTTGCAGATCTA
GCTCACGTTGACGATGAACTCGGAGCCCTTCAAGAATTTTGATACGATCA
GAATCCTTGTTTGCGCATGCGTTCTTTTTATGTGCCTTTTGACTTCGTTT
GACTTTATTTCGAGTCATTTTCTCTTGATGTTTGACTTTCTTGACCACGT
GTGTTTTACGAAGGAGCACTTCAGCTTTATCGCGGTCGTTGTATGCTTTC
TCGACGGCCTTGAAAGCTGAGAAATTCATTCCAGTTTGTGTTTTCATGAA
AGCTCGTTGTAAATGACTACTTTGGTAGGTCTTCTTGATTGATGGGACAA
TCGCACTCTTCATCTTCATCTTTCGATCGATATCTCGAGTCGCTGTTCGA
ATGTCATCTGCTCCCTCTACGGTCCGCATAATGAGTTCTTCCAATGGATC
ATGGGTAATGACGTCAGGTTTTCGGATGGNTACGGTCCGCATAATGAGTT
CTTCTAATGGATCATGGGTAATGACGTCAGGTTTTCGGATGGATAATCGG
AATTGAGTTTCTTCATCGTTATCATTCTGAATGCGGTTAGGAGTTTCGAT
TTTGCCAAGGAAAGCATATTGCGTTTGATATTTCCCTATGGTGGTAGGAG
GAGCAGATTTCGGCTGTTTATGAGAAAGGAGGGTGGACACACCTAAATCT
TCAGCAATTTGTTCCAAATTATCCGGTGTTTTCCTTGGTAGATGAGCAGA
TCTCTGAGCACGACTAGCAGTTGGTATTTGTCCTGTTTGGCGAGTGATGA
CTGAGTCTTGCAAACGGTCCGATACTGTGATTCGGTGATTATGTTTGGAA
CCAGAAAGCTTTGATGCTCTATTTAAGATCTGAGTCGTTTGTCCTTCAAG
CTTCTGTAAATCCACACTGATATGTCGATGAATGGGACGCGGTAGTCCGG
AGCGTAAGCAGGTGCCATGCACCCGGGCATCATGGCTTTCAGCATGCGGT
AATCGATAATGCAAGGACTTGAAAGAGGCGCTACTTTTGGCGTGTTTTGA
GCGCCGCAGACGAAGGTAGGTTTCATAGTCCAGTCGCATAGAGGAGAAAC
TTTGATACAAATGGTCTTGGAATTGAAGGTTGGGAGAGGTTGGCGGTGGT
CGCGGATAACCTTTGCGATCTCGATAAAAACGTTGTATAGAAACAGCAGC
CCTTTACGAAATAGAGAATTCCGTTTTAAAAAGGTAATTACATTACAACA
ATTTTTCTAATCAAAATCGAACTCAGTACGAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071942-exon-scaffold_65-1575043694:97770..98886 | TCONS_00071942-exon-scaffold_65-1575043694:97770..98886 | Clytia hemisphaerica | exon |
| TCONS_00071942-exon-scaffold_65-1575043694:96951..97706 | TCONS_00071942-exon-scaffold_65-1575043694:96951..97706 | Clytia hemisphaerica | exon |
| TCONS_00071942-exon-scaffold_65-1510915933:97770..98886 | TCONS_00071942-exon-scaffold_65-1510915933:97770..98886 | Clytia hemisphaerica | exon |
| TCONS_00071942-exon-scaffold_65-1510915933:96951..97706 | TCONS_00071942-exon-scaffold_65-1510915933:96951..97706 | Clytia hemisphaerica | exon |
| TCONS_00071942-exon-scaffold_65-1491911889:97770..98886 | TCONS_00071942-exon-scaffold_65-1491911889:97770..98886 | Clytia hemisphaerica | exon |
| TCONS_00071942-exon-scaffold_65-1491911889:96951..97706 | TCONS_00071942-exon-scaffold_65-1491911889:96951..97706 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:96951..98886 - |
Blast
The following BLAST results are available for this feature:
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