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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071941 ID=TCONS_00071941|Name=TCONS_00071941|organism=Clytia hemisphaerica|type=transcript|length=4451bpRun BLAST on NCBI transcript from alignment at scaffold_65:45805..57497- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071941 ID=TCONS_00071941|Name=TCONS_00071941|organism=Clytia hemisphaerica|type=transcript|length=11693bp|location=Sequence derived from alignment at scaffold_65:45805..57497- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071941 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 6.461e-33 Identity = 128/426 (30.05%), Postives = 211/426 (49.53%), Query Frame = 1
Query: 2035 QVKIENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLDSDP---ITYSMQCKSDEKFFHIDPRSGRLTTKVPFDYELRQTYNFFIQASDGFSYSETEVKINIIDVNDNQPVFKYLSASVNVSEGALPFSSVYQIYATDAD--FNDQIRYIITQGNNAKKFF---ITGQTIHLNSSLDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXXXXPSFTQSVYEYELTQQ-TLFKTLFRVNATDPDE-TNRQMLFSIKGSLAKEYFRILRNGSVQMIKSL---QESEFRFFVQVSDNPHYGSPR-KGFAEVIIKNKEPIKEARKDPPKVFITPTIARLTTNFPTGSLVANVKIQSEDS-VNLAFTYSIVS--GNKAGLFRIEDGNIFTTKCIDDKAIGSYTMSISVYD-GVFTTKQSLSVVV 3258
++ ++++N++PP F D+ L++ E + +G+ I + A D D +TY++ +D+ F IDP SG L D E R Y+ ++A DG S+ + I + DVND+ P F S ++ E +P S V I ATD D N +I YI+ + + FF ITG +L LDYE + Y L + A+D G+ + + V + DVNDN P F+ + Y L + + T+ N TD D+ N Q+ +SI + F + +NG ++++K+L +S + VQV D P + R A+V I I D P F++P + + N P ++V + DS N Y++++ GNK + I DG + T +D + + +YT+++ D G + S VVV
Sbjct: 1727 EITLQDINDNPPVFPTDMLDLTVEENIGDGSKIMQLTAMDADEGANALVTYTIISGADDSF-RIDPESGDLIATRRLDRERRSKYSLLVRADDGLQSSDMRINITVSDVNDHTPKFSRPVYSFDIPEDTIPGSLVAAILATDDDSGVNGEITYIVNEDDEDGIFFLNPITG-VFNLTRLLDYEVQQYYILTVRAEDGGGQ--FTTIRVYFNILDVNDNPPIFSLNSYSTSLMENLPVGSTVLVFNVTDADDGINSQLTYSIASGDSLGQFTVDKNGVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSI-----ILLDVNDNPPTFLSPKLTYIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKFSIGTI-DGEVRLTGELDREEVSNYTLTVVATDKGQPSLSSSTEVVV 2142 HSP 2 Score: 100.523 bits (249), Expect = 5.812e-21 Identity = 109/430 (25.35%), Postives = 189/430 (43.95%), Query Frame = 1
Query: 1759 NADIGTVLQTFQAEAYKLSPKNQLAKIKLQIISGDPEDVFIFINVNESSYFNLVLNGTLNYDLTNQYILTIVAKNVDEPTFHPGTYQKTFLH-QVKIENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLDSDP---ITYSMQCKSDEKF-FHIDPRSGRLTTKVPFDYELRQTYNFFIQASDGFSYSET---EVKINIIDVNDNQPV--FKYLSAS---VNVSEGALPFSSVYQIYATDAD---FNDQIRYIITQGNNAKKFFITGQT------IHLNSSLDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXX-------XXPSFTQSVYEYELTQQTLFKTLFR-VNATDPDE-TNRQMLFSIKGSLAKEYFRILRNGSVQMIKSL----QESEFRFFVQVSDNPHYGSPRKGFAEVII 2943
++DIG+ +Y++ N+ + +L I + +P E ++ +LV G L+ ++T QY L + ++ EP ++ +L V ++++N++PP F Y + E G+ + + A D D I Y +Q DE F +DP +G +T + P D+E R+ Y+ +QA D S T E I ++DVNDN PV F+Y A+ +V E A + V + TDAD N I I GN + F + I + S+LD E SY L ++ DN G + V + + P F+Q VY L+++ + ++ATD D N + +SI +F I + + S +E + + +S P+ +A++++
Sbjct: 161 DSDIGS--NGVDHRSYRIIRGNEAGRFRLDI-TLNPS--------GEGAFLHLVSKGGLDREVTPQYQLLVEVEDKGEPK------RRGYLQVNVTVQDINDNPPVFGSSHYQAGVPEDAVVGSSVLQVAAADADEGTNADIRYRLQ---DEGTPFQMDPETGLITVREPLDFEARRQYSLTVQAMDRGVPSLTGRAEALIQLLDVNDNDPVVKFRYFPATSRYASVDENAQVGTVVALLTVTDADSPAANGNISVQILGGNEQRHFEVQSSKVPNLSLIKVASALDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLSEEAPPGSYVSGISATDGDSGLNANLRYSIVSGNGLGWFHISEHSGLVTTGSSGGLDRELASQIVLNISARDQGVHPKVSYAQLVV 570 HSP 3 Score: 99.7525 bits (247), Expect = 1.208e-20 Identity = 136/538 (25.28%), Postives = 230/538 (42.75%), Query Frame = 1
Query: 1729 AQSTTSSVDKNADIGTVLQTFQAEAYKLSPKNQLAKIKLQIISGDPEDVFIFINVNESSYFNLVL---NGTLNYDLTNQYILTI-VAKNVDEPTFHPGTYQKTFLHQVK-IENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLDSD---PITYSMQCKSDEKFFHIDPRSGRLTTKVP--FDYELRQTYNFFIQASDGFSY---SETEVKINIIDVNDNQPVFKYLSA-SVNVSEGALPFSSVYQIYATDADFNDQ--IRYIITQGNNAKKFF----ITGQTIHLNSSLDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXXXXPSFTQSVYEYELTQQTLFKT-LFRVNATDPD-ETNRQMLFSIKGSLAKEYFRILRNGSVQMIKSLQESE---FRFFVQVSDNPHYGSPRKGFAEVIIKNKEPIKEARKDPPKVFITPTIARLT-TNFPTGSLVANVKIQSEDSVNLAFTYSIVSGNKAGLFRIED--GNIFTTKCIDDKAIGSYTMSISVYDGVFTTKQSLSVVV 3258
A S +SVD+NA +GTV+ N I +QI+ G+ + F V S NL L L+ + Y LT+ V+ N P + + V + ++N+HPP F +Y +++ E+ P G+Y+ A D DS + YS+ + +FHI SG +TT D EL I A D + S ++ + ++DVND +PVF V+V E A + + + ATD D D +R+ + + ++ F ++G+ + SSLD E Y L + A D +NV + D+NDN P F Y + + + + V+ATDPD TN + +SI + ++G + +L E ++ + +D + SP + + + + + D P VF + + N G V +V + D +N +Y I +G++ G+F I G + T ID + Y + + G T +++ V
Sbjct: 360 ATSRYASVDENAQVGTVVALLTVTDADSPAAN--GNISVQILGGNEQRHF---EVQSSKVPNLSLIKVASALDRERIPSYNLTVSVSDNYGAPPGAAVQARSSVASLVIFVNDINDHPPVFSQQVYRVNLSEEAPPGSYVSGISATDGDSGLNANLRYSIVSGNGLGWFHISEHSGLVTTGSSGGLDRELASQIVLNISARDQGVHPKVSYAQLVVTLLDVNDEKPVFSQPEGYDVSVVENAPTGTELLMLRATDGDLGDNGTVRFSLQEAETDRRSFRLDPVSGR-LSTISSLDREEQAFYSLLVLATDLGSPPQSSMARINVSLLDINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPDLGTNGTVKYSISAGDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQ-------DNPPVFSQVAYSFVVFENVALGYHVGSVSASTMD-LNSNISYLITTGDQKGMFAINQVTGQLTTANVIDREEQSFYQLKVVASGGTVTGDTMVNITV 883 HSP 4 Score: 95.9005 bits (237), Expect = 1.546e-19 Identity = 123/461 (26.68%), Postives = 208/461 (45.12%), Query Frame = 1
Query: 1915 LVLNGTLNYDLTNQYILTIVAKN-VDEPTFHPGTYQKTFLHQVKIENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLDSDP---ITYSMQCKSDEKFFHIDPRSGRLTTKVPFDYE--LRQ----TYNFFIQASD-GFSY---SETEVKINIIDVNDNQPVFKYLSASVNVSEGALPFSSVYQIYATDADF--NDQIRYIITQGNNAKKFFI--TGQTIHLNSSLDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXXXXPSFTQSVYEYELTQQTLFKTLF-RVNATDPDET-NRQMLFSIKGSLAKEYFRILRN-GSVQMIKSLQ-ESEFRFFVQVSDNPHYGSPRKGFAEVIIKNKEPIKEARKDPPKVFITPTIARLTTNFPTGSLVANVKIQSEDS-VNLAFTYSIVSGNKAG-LFRIED--GNIFTTKCIDDKAIGSYTMSISVYD 3219
L + L+ +L ++Y+L +VA + EP T V +E+VN++ P F+ Y+ E+ G+++G+ A D D P + YS + + F + SG +T FD E +R+ ++F + A+D G + V + + D+NDN P F +SE A + V ++ A+D D N I Y I +GN ++F I T + L LDYE+T +Y L I A D+ +N+ + D NDN PSF +S ++ + L V ATD D N + +SI G+ F I N GS+ + K L E++ + + ++ PR V+I +++ +PP + N P G+ V +V D+ +N +Y+I+ G F I++ G I+T ID + + +++ D
Sbjct: 1052 LYIKSELDRELQDRYVLMVVASDRAVEP------LSATVNVTVILEDVNDNRPLFNSTNYTFYFEEEQRAGSFVGKVSAVDKDFGPNGEVRYSFEMVQPD--FELHAISGEITNTHQFDRESLMRRRGTAVFSFTVIATDQGIPQPLKDQATVHVYMKDINDNAPKFLKDFYQATISESAANLTQVLRVSASDVDEGNNGLIHYSIIKGNEERQFAIDSTSGQVTLIGKLDYEATPAYSLVIQAVDSGTIPLNSTCTLNIDILDENDNTPSFPKSTLFVDVLENMRIGELVSSVTATDSDSGDNADLYYSITGTNNHGTFSISPNTGSIFLAKKLDFETQSLYKLNITAKDQGRPPRSSTMSVVIH----VRDFNDNPPSFPPGDIFKSIVENIPIGTSVISVTAHDPDADINGQLSYTIIQQMPRGNHFTIDEVKGTIYTNAEIDREFANLFELTVKAND 1500 HSP 5 Score: 95.1301 bits (235), Expect = 2.834e-19 Identity = 120/459 (26.14%), Postives = 194/459 (42.27%), Query Frame = 1
Query: 1909 FNLVLNGTLN----YDLTNQYILTIVAKNVDEPTFHPGTYQKTFLHQVKIENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLDSDP---ITYSMQCKSDEKFFHIDPRSGRLTTKVPFDYELRQTYNFFIQASDGFS---YSETEVKINIIDVNDNQPVFKYLSASVNVSEGALPFSSVYQIYATDAD--FNDQIRYIITQGNNAKKFFITGQT--IHLNSSLDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXXXXPSFTQSVYEYELTQQ--TLFKTLFRVNATDPDE-TNRQMLFSIKGSLAKEYFRILRNGSVQMIKSL-QESEFRFFVQVSDNPHYGSPR---KGFAEVIIKNKEPIKEARKDPPKVFITPTIARLTTNFPTGSLVANVKIQSEDSVNLAFTYSIVSGNKAGLFRIEDGNIFTTKCIDDKAIGSYTMSISVYDG 3222
F + NG L D +Q +V + D P + T + + +VN++PP F L I E P T + + A D DS P I Y++ KF I G + D E Y + A+D S TEV + ++D+NDN P+F V ++E L + + Q++A D D N Q+RY I GN ++F I T I + LD E T +Y L + A D V++++ D+ND P F S Y + + TL +T+ +V A D D +N ++ + + G F + +G + + +SL +E++ RF + ++ GSP G VI + + + P + + PTG+ V V D+ A I+ GN G I T+ +D + +YT+ + D
Sbjct: 1992 FTVDKNGVLKVLKALDRESQSFYNLVVQVHDLPQIPASRFTSTAQVSIILLDVNDNPPTF-LSPKLTYIPENTPIDTVVFKAQATDPDSGPNSYIEYTLLNPLGNKF-SIGTIDGEVRLTGELDREEVSNYTLTVVATDKGQPSLSSSTEVVVMVLDINDNNPIFAQALYKVEINENTLTGTDIIQVFAADGDEGTNGQVRYGIVNGNTNQEFRIDSVTGAITVAKPLDREKTPTYHLTVQATDRGSTPRTDTSTVSIVLLDINDFVPVFELSPYSVNVPENLGTLPRTILQVVARDDDRGSNSKLSYVLFGGNEDNAFTLSASGELGVTQSLDRETKERFVLMITAT-DSGSPALTGTGTINVI------VDDVNDNVPTFASKAYFTTIPEDAPTGTDVLLVNASDADASKNA-VIRIIGGNSQFTINPSTGQIITSALLDRETKDNYTLVVVCSDA 2440 HSP 6 Score: 90.8929 bits (224), Expect = 5.708e-18 Identity = 110/409 (26.89%), Postives = 183/409 (44.74%), Query Frame = 1
Query: 2038 VKIENVNEHPPKFDLDLYSLSIGEQVPNGTYIGRFLARDLD---SDPITYSMQCKSDEKFFHIDPRSGRLTTKVPFDYELRQTYNFFIQASDGF---SYSETEVKINIIDVNDNQPVFKYLSASVNVSEGALPFSSVYQIYATDADFNDQIRYIITQGNNAKKFFITGQTIHLNSS--LDYESTKSYQLHITAQDNRGRRSYRXXXXXXXXXXXXXXXPSFTQSVYEYELTQQ-TLFKTLFRVNATDPDE-TNRQMLFSIKGSLAKEYFRI-LRNGSVQMIKSL--QESEFRFFVQVSDNPHYGSPRKGFAEVIIKNKEPIKEARKDPPKVFITPTIARLTTNFPTGSLVANVKIQSEDS-VNLAFTYSIVSGNKAGLFRI-EDGNIFTTKCIDDKAIGSYTMSISVYD 3219
V + ++N++ P F Y I E P G+YI A D D + + YS+ D F ++ +SG ++T++ D E + Y I A+DG S ++ V I ++D DN PVF ++ S V E V + A+ D N I Y+IT G+ F I T L ++ +D E YQL + A G D +VN+ V+D+NDN P F Q++ + + ++F+ A DPDE N +L+S+K + K F I +NG++ ++ L ++ + SD G P+ + ++ + + + P L+ + P S V+ +DS N Y+I GN F I DG ++ +D + Y + + D
Sbjct: 677 VSLLDINDNSPVFYPVQYFAHIKENEPGGSYITTVSATDPDLGTNGTVKYSISA-GDRSRFQVNAQSGVISTRMALDREEKTAYQLQIVATDGGNLQSPNQAIVTITVLDTQDNPPVFSQVAYSFVVFENVALGYHVGSVSASTMDLNSNISYLITTGDQKGMFAINQVTGQLTTANVIDREEQSFYQLKVVAS---GGTVTGDTMVNITVKDLNDNSPHFLQAIESVNVVENWQAGHSIFQAKAVDPDEGVNGMVLYSLKQN-PKNLFAINEKNGTISLLGPLDVHAGSYQIEILASD---MGVPQLSSSVILTVY---VHDVNDNSPVFDQLSYEVTLSESEPVNSRFFKVQASDKDSGANGEIAYTIAEGNTGDAFGIFPDGQLYIKSELDRELQDRYVLMVVASD 1074 The following BLAST results are available for this feature:
BLAST of TCONS_00071941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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