TCONS_00071940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071940
Unique NameTCONS_00071940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071940 ID=TCONS_00071940|Name=TCONS_00071940|organism=Clytia hemisphaerica|type=transcript|length=471bp
CCGGAGAAATAAGTCTTGATGCTGGTGTTTACAAAGTAGCTATTCAAATC
AATGTGTATAACCCGAGCGACGTTCCAAGGTGGTTTTCATTGCAAGCTGT
CAGAATGAATTCTACAAAACAACTTTCAAATTTGAAAGCAAAGACACAAA
TAAATTTTCTACGGGCAAATACTTTGGGAATATCAAGTATTTTGCAACTG
GAGCAGCCTGGCATTTTAAAATTGGAGCTAATTTCTGAAGATATTGGTGA
TGGTAAAGATTTCTTTGTTGAAGATGGAAGTGTAATCTCTTTAGCTCGTA
TTGGTGACTACGATGGTCATATCCTGTCAGACCTCCCTCGTGTTCAAACT
GGAAAGCAATTCATTTACACATGTCAATACAATGGCTTTATCGAGCCGGA
TGAATATCGCTGGTTTAAAAATGGAGTCGACATCACAGCTAACATCATAG
GGCGAAAAAACATCACAGTAG
Run BLAST on NCBI

protein sequence of TCONS_00071940-protein

>TCONS_00071940-protein ID=TCONS_00071940-protein|Name=TCONS_00071940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
GEISLDAGVYKVAIQINVYNPSDVPRWFSLQAVRMNSTKQLSNLKAKTQI
NFLRANTLGISSILQLEQPGILKLELISEDIGDGKDFFVEDGSVISLARI
GDYDGHILSDLPRVQTGKQFIYTCQYNGFIEPDEYRWFKNGVDITANIIG
RKNITV
Run BLAST on NCBI

transcript from alignment at scaffold_65:33646..36138-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071940 ID=TCONS_00071940|Name=TCONS_00071940|organism=Clytia hemisphaerica|type=transcript|length=2493bp|location=Sequence derived from alignment at scaffold_65:33646..36138- (Clytia hemisphaerica)
CCGGAGAAATAAGTCTTGATGCTGGTGTTTACAAAGTAGCTATTCAAATC
AATGTGTATAACCCGAGCGACGTTCCAAGGTATATTTCCTTTTATTTCCA
TCAGAGGTCACTTAATCCTTCATGCTACTTTGCAGATAGGAAACGGCTTT
GAGTGAAAATATATGATCACTTTGCCCATTATTTTTTCAGACTAACTAAA
AAAAAGTCGAGTAGTTCTTTTGTTTCGGAAGCTGCGCGGTCAATTTAATC
AAAGTGAAACGTGAAATAAAGATATGTTTTAGTTCGACTCCTAAAAAATG
AAAAAACGATGACCAGCGACACATCCACGTACCCCTTTTTGCCAAAGTAC
CCAACCCGGGTTTGCACCGATGTTTTAAATGAAAATGGAAAATCTCTAGT
TGATGTACCATACTCTTTTTTATATCAATTTAAAGGTGGTTTTCATTGCA
AGCTGTCAGAATGAATTCTACAAAACAACTTTCAAATTTGAAAGCAAAGA
CACAAATAAATTTTCTACGGGCAAATACTTTGGGAATATCAAGTATTTTG
CAACTGGAGCAGCCTGGCATTTTAAAATTGGAGCTAATTTCTGAAGATAT
TGGTGATGGTAAAGATTTCTTTGTTGAAGATGGAAGTGTAATCTCTTTAG
CTCGTATTGGTAAGTGCTCAAAGCTCTTCAAACAAGAAATTTGACATCAT
ACCTTGCAATCTTACTTTATAGAGCATACATCTATAAAAAACCTTTTTTT
TAAGCTATTTTGTAATAAAATAGCCAGAAAATTAAAGTTATTATTCAAAA
AACATTTTGACAAATATTTTTCAGCATAAGCTTTTCGTTTTATTAAAAAA
CATCATCAGTGCATATACAAGTAAAACTTTCAAAATAAAATGTTATCGAA
TTTATAAAAAAAGCTAAAAGTAGAGATAATTGCACTAATAATAGCTCTAA
AGCATACCCGAGAGAGAAAGAATCTTGAAGCTTCAATAATAGCCTAATAG
CAATTAAAAACCCGTCATTAAACAATCAAATTGAAACGAAAATTTTACAA
CTTTCTAGACATGGAATTATCTCTACTTTTAGCTTTTTTTATAAATTCGA
TAACATTTTATTTTGAAAGTTTTACTTGTATATGCACTGATGATGTTTTT
TAATAAAACGAAAAGCTTATGCTGAATAATATTTGTCAAAATGTTTTTTG
AATAATAACCTTAAGCTATTTTATTTTCAAGGCAAACTCAATATCGAACC
TAGTCCGTAAGTTCGCTTTTATTAGGACAGCGCTAAAGACCAAAGTCGAA
TTTCCAACTGTAAATTTTTTATGACAGAAAACTGCCTCACAGCTCGAACC
CGTCCTGTATACATCGGGGGGGGGGGGGGGGGTTTTTTTTTAAAAAAAAA
CCCCCCCCCAGCCCGAACCCGTCCTGTTTAGATCGGGGGGGGGGGGGAGG
GTTCAGGACACCCGATTCCATAATTCCACCAATTCTTTCTCTAATTTCCG
TCAAACCGTCTAAAAATGAACCGAAATTCTGTCACTGGAAATTCCTTTGA
AACTCAAAATTTTTGTCAAAAATTCTGCGAATTTTGAATATTTTTTACCG
AAATTCCGAAATTCCGCAAAACCTTTGGGGCGGGTCTCCTGTCTAATAGA
AAAAAGCGTGTAAGACGATTTACTTGGACTCGATTGTAAAAAAAAGATGT
CAAGTTCATGAAAACTACGAAATAGTTCACTGTCAGAATATTCAGGTTAC
ACAAGTTCTTTTTCATTCGTTTCTTCATACTTTGAAAATGTATTTTAATG
GAATAAATGAGACGATAGACGAGATTATGGAATACCGCATTTTCTAAGAT
ATCATGATTGAAAAAGATCACACGCCTTCTTTGGGTTCTATAAAATCCTC
TAGTATCCAAACAAGCTTTTCTTGGAATGACCTATTAGAAAACTGTCATT
ATCAATTTTAAGGTGACTACGATGGTCATATCCTGTCAGACCTCCCTCGT
GTTCAAACTGGAAAGCAATTCATTTACACATGTCAATACAATGGCTTTAT
CGAGCCGGATGAATATCGCTGGTTTAAAAATGGAGTCGTGAGTTATTACT
CTTTGTTACAAAAGATTTCTTTAACGAATAATTATTTTAAATATTACTGA
TTATAGTAGACTGTTTTTCTAGATTTATTTATTCACGGTCTTCTCGAGGT
GGAATAAGTGATTGATGATCCTTAAGGTATAGATCAAAACTTGAGAACTT
GAGAATTTAAATACAAATTTAGGTCCCGAATGGTCCGGCATAAAGTTATT
CTTAAAACCATTGAAATGGTTTACAATCTTATATGCTATAAACTGTATTC
ACTAACGGGTACGAACTTCGAATTCGTTAAATATCTTCAAATGAATCGAG
AAAAACGTTCAAACTTCCTTTATTTCAACCAACTTTTAATTTTATTGTAG
GACATCACAGCTAACATCATAGGGCGAAAAAACATCACAGTAG

Coding sequence (CDS) from alignment at scaffold_65:33646..36138-

>TCONS_00071940 ID=TCONS_00071940|Name=TCONS_00071940|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_65:33646..36138- (Clytia hemisphaerica)
GACATCACAGCTAACATCATAGGGCGAAAAAACATCACAGTAGTGACTAC
GATGGTCATATCCTGTCAGACCTCCCTCGTGTTCAAACTGGAAAGCAATT
CATTTACACATGTCAATACAATGGCTTTATCGAGCCGGATGAATATCGCT
GGTTTAAAAATGGAGTCGTGGTTTTCATTGCAAGCTGTCAGAATGAATTC
TACAAAACAACTTTCAAATTTGAAAGCAAAGACACAAATAAATTTTCTAC
GGGCAAATACTTTGGGAATATCAAGTATTTTGCAACTGGAGCAGCCTGGC
ATTTTAAAATTGGAGCTAATTTCTGAAGATATTGGTGATGGTAAAGATTT
CTTTGTTGAAGATGGAAGTGTAATCTCTTTAGCTCGTATTGGGAGAAATA
AGTCTTGATGCTGGTGTTTACAAAGTAGCTATTCAAATCAATGTGTATAA
CCCGAGCGACGTTCCAAGGACATCACAGCTAACATCATAGGGCGAAAAAA
CATCACAGTAGTGACTACGATGGTCATATCCTGTCAGACCTCCCTCGTGT
TCAAACTGGAAAGCAATTCATTTACACATGTCAATACAATGGCTTTATCG
AGCCGGATGAATATCGCTGGTTTAAAAATGGAGTCGTGGTTTTCATTGCA
AGCTGTCAGAATGAATTCTACAAAACAACTTTCAAATTTGAAAGCAAAGA
CACAAATAAATTTTCTACGGGCAAATACTTTGGGAATATCAAGTATTTTG
CAACTGGAGCAGCCTGGCATTTTAAAATTGGAGCTAATTTCTGAAGATAT
TGGTGATGGTAAAGATTTCTTTGTTGAAGATGGAAGTGTAATCTCTTTAG
CTCGTATTGGGAGAAATAAGTCTTGATGCTGGTGTTTACAAAGTAGCTAT
TCAAATCAATGTGTATAACCCGAGCGACGTTCCAAGGACATCACAGCTAA
CATCATAGGGCGAAAAAACATCACAGTAGTGACTACGATGGTCATATCCT
GTCAGACCTCCCTCGTGTTCAAACTGGAAAGCAATTCATTTACACATGTC
AATACAATGGCTTTATCGAGCCGGATGAATATCGCTGGTTTAAAAATGGA
GTCGTGGTTTTCATTGCAAGCTGTCAGAATGAATTCTACAAAACAACTTT
CAAATTTGAAAGCAAAGACACAAATAAATTTTCTACGGGCAAATACTTTG
GGAATATCAAGTATTTTGCAACTGGAGCAGCCTGGCATTTTAAAATTGGA
GCTAATTTCTGAAGATATTGGTGATGGTAAAGATTTCTTTGTTGAAGATG
GAAGTGTAATCTCTTTAGCTCGTATTGGGAGAAATAAGTCTTGATGCTGG
TGTTTACAAAGTAGCTATTCAAATCAATGTGTATAACCCGAGCGACGTTC
CAAGGACATCACAGCTAACATCATAGGGCGAAAAAACATCACAGTAGTGA
CTACGATGGTCATATCCTGTCAGACCTCCCTCGTGTTCAAACTGGAAAGC
AATTCATTTACACATGTCAATACAATGGCTTTATCGAGCCGGATGAATAT
CGCTGGTTTAAAAATGGAGTCGTGGTTTTCATTGCAAGCTGTCAGAATGA
ATTCTACAAAACAACTTTCAAATTTGAAAGCAAAGACACAAATAAATTTT
CTACGGGCAAATACTTTGGGAATATCAAGTATTTTGCAACTGGAGCAGCC
TGGCATTTTAAAATTGGAGCTAATTTCTGAAGATATTGGTGATGGTAAAG
ATTTCTTTGTTGAAGATGGAAGTGTAATCTCTTTAGCTCGTATTGGGAGA
AATAAGTCTTGATGCTGGTGTTTACAAAGTAGCTATTCAAATCAATGTGT
ATAACCCGAGCGACGTTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044665XLOC_044665Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071940-exon-scaffold_65-1575043694:36060..36138TCONS_00071940-exon-scaffold_65-1575043694:36060..36138Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1575043694:35480..35703TCONS_00071940-exon-scaffold_65-1575043694:35480..35703Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1575043694:34052..34176TCONS_00071940-exon-scaffold_65-1575043694:34052..34176Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1575043694:33646..33688TCONS_00071940-exon-scaffold_65-1575043694:33646..33688Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1510915933:36060..36138TCONS_00071940-exon-scaffold_65-1510915933:36060..36138Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1510915933:35480..35703TCONS_00071940-exon-scaffold_65-1510915933:35480..35703Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1510915933:34052..34176TCONS_00071940-exon-scaffold_65-1510915933:34052..34176Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1510915933:33646..33688TCONS_00071940-exon-scaffold_65-1510915933:33646..33688Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1491911889:36060..36138TCONS_00071940-exon-scaffold_65-1491911889:36060..36138Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1491911889:35480..35703TCONS_00071940-exon-scaffold_65-1491911889:35480..35703Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1491911889:34052..34176TCONS_00071940-exon-scaffold_65-1491911889:34052..34176Clytia hemisphaericaexon
TCONS_00071940-exon-scaffold_65-1491911889:33646..33688TCONS_00071940-exon-scaffold_65-1491911889:33646..33688Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071940-proteinTCONS_00071940-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:33646..36138 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	2.16139	2.5252	0	0	0	0.208381	7.05331	6.17576	0	0.191579	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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