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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071932 ID=TCONS_00071932|Name=TCONS_00071932|organism=Clytia hemisphaerica|type=transcript|length=888bp
tgaaaattaattatttgcAAACAATTTAAAGGGAATTAAAAGTCGTGAAA
ATGTAATCAAAAAGTAGAAATTAATACACAATAGAGACGAGTATAAAAAG
GGCAACTTTGCACCAATTTTGGAGATTCTAATCTGAGATTATCTCTAGAC
AGTTGAGGGCAAACAGTCAAAGAATACTATCAGAAAATGCTGGATTACAT
GATGGAAATGAGTGAAGAATTCGGCACAAACGTTAAAAGACCAGCATTTT
CCATCGACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTACAACAGTT
GGGAAAACTGACGAAAATTTCAACGACTCTTTACCGACTTTAACTCGTCG
ATATTCCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGATAAATGTG
ACCATAGCAACAATCAACTTCGTGTCAACTTACATGGGAACAGTCTTGAA
GATGATTTCGAAAATAGATCATTTACAACTTCACCAACTCGCTTCAATAG
AGAAGATATAGACGAAGACCTCAATTTGAAGTATTCCAAATATTTCAACG
ACATTGACGATACGAGCAATCGATACAGCAAACGTCGACGGACCATTTTC
ACGTCAAGTCAACTTGAACGGTTAGAGTTTGAATTCCAACAGCAACAATA
TATCGTTGGTCAAGAGAGACGTTTTCTTGCAAGACAACTTGGTTTGAATG
AAATTCAAGTCAAAGTTTGGTTTCAGAACCGTAGAATAAAATGGAGGAAA
TTGACACATGGTTCCATCTCGTCTGTTATTCCAGAACtttctttatgatt
ttgtatATATGATTATTTGACAATGTAGAAATATTTTCgtaaaatttatg
taaataATTGTATATAATGAATTGATGAAATAATTTCT Run BLAST on NCBI protein sequence of TCONS_00071932-protein >TCONS_00071932-protein ID=TCONS_00071932-protein|Name=TCONS_00071932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MLDYMMEMSEEFGTNVKRPAFSIDSILSQKMSEDSTTVGKTDENFNDSLP
TLTRRYSSADDSYTKCSCDKCDHSNNQLRVNLHGNSLEDDFENRSFTTSP
TRFNREDIDEDLNLKYSKYFNDIDDTSNRYSKRRRTIFTSSQLERLEFEF
QQQQYIVGQERRFLARQLGLNEIQVKVWFQNRRIKWRKLTHGSISSVIPE
LSL Run BLAST on NCBI transcript from alignment at scaffold_65:24130..25249- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071932 ID=TCONS_00071932|Name=TCONS_00071932|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at scaffold_65:24130..25249- (Clytia hemisphaerica)
TGAAAATTAATTATTTGCAAACAATTTAAAGGGAATTAAAAGTCGTGAAA
ATGTAATCAAAAAGTAGAAATTAATACACAATAGAGACGAGTATAAAAAG
GGCAACTTTGCACCAATTTTGGAGATTCTAATCTGAGATTATCTCTAGAC
AGTTGAGGGCAAACAGTCAAAGAATACTATCAGAAAATGCTGGATTACAT
GATGGAAATGAGTGAAGAATTCGGCACAAACGTTAAAAGACCAGCATTTT
CCATCGACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTACAACAGTT
GGGAAAACTGACGAAAATTTCAACGACTCTTTACCGACTTTAACTCGTCG
ATATTCCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGATAAATGTG
ACCATAGCAACAATCAACTTCGTGTCAACTTACATGGGAACAGTCTTGAA
GATGATTTCGAAAATAGATCATTTACAACTTCACCAACTCGCTTCAATAG
AGAAGATATAGACGAAGGTGTGTTTTACTTCTTACAAAATCTTCTCTTCG
AAATCAAAATCTCTGATATCAAAAACACTCTCAGATACTCAAACATTGAA
GTTTTTCCAACATTCTCCGTATACTTTACTGTATGAAGCATTCTCTTGAA
GTCTCTTTCCCTTTAGAAACACTGATCTCCAACTAGTCATTCATTCCATT
TAAGTAGTAGGCCTTTATTTAACCGATTTATTCTATCGTTATTTTACAGA
CCTCAATTTGAAGTATTCCAAATATTTCAACGACATTGACGATACGAGCA
ATCGATACAGCAAACGTCGACGGACCATTTTCACGTCAAGTCAACTTGAA
CGGTTAGAGTTTGAATTCCAACAGCAACAATATATCGTTGGTCAAGAGAG
ACGTTTTCTTGCAAGACAACTTGGTTTGAATGAAATTCAAGTCAAAGTTT
GGTTTCAGAACCGTAGAATAAAATGGAGGAAATTGACACATGGTTCCATC
TCGTCTGTTATTCCAGAACTTTCTTTATGATTTTGTATATATGATTATTT
GACAATGTAGAAATATTTTCGTAAAATTTATGTAAATAATTGTATATAAT
GAATTGATGAAATAATTTCT Coding sequence (CDS) from alignment at scaffold_65:24130..25249- >TCONS_00071932 ID=TCONS_00071932|Name=TCONS_00071932|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_65:24130..25249- (Clytia hemisphaerica)
ACCTCAATTTGAAGTATTCCAAATATTTCAACGACATTGACGATACGAGC
AATCGATACAGCAAACGTCGACGGACCATTTTCACGTCAAGTCAACTTGA
ACGGTTAGAGTTTGAATTCCAACAGCAACAATATATCGTTGGTCAAGAGA
GACGTTTTCTTGCAAGACAACTTGGTTTGAATGAAATTCAAGTCAAAGTT
TGGTTTCAGAACCGTAGAATAAAATGGAGGAAATTGACACATGGTTCCAT
CTCGTCTGTTATTCCAGAACTTTCTTTATGAATGCTGGATTACATGATGG
AAATGAGTGAAGAATTCGGCACAAACGTTAAAAGACCAGCATTTTCCATC
GACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTACAACAGTTGGGAA
AACTGACGAAAATTTCAACGACTCTTTACCGACTTTAACTCGTCGATATT
CCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGATAAATGTGACCAT
AGCAACAATCAACTTCGTGTCAACTTACATGGGAACAGTCTTGAAGATGA
TTTCGAAAATAGATCATTTACAACTTCACCAACTCGCTTCAATAGAGAAG
ATATAGACGAAGACCTCAATTTGAAGTATTCCAAATATTTCAACGACATT
GACGATACGAGCAATCGATACAGCAAACGTCGACGGACCATTTTCACGTC
AAGTCAACTTGAACGGTTAGAGTTTGAATTCCAACAGCAACAATATATCG
TTGGTCAAGAGAGACGTTTTCTTGCAAGACAACTTGGTTTGAATGAAATT
CAAGTCAAAGTTTGGTTTCAGAACCGTAGAATAAAATGGAGGAAATTGAC
ACATGGTTCCATCTCGTCTGTTATTCCAGAACTTTCTTTATGAATGCTGG
ATTACATGATGGAAATGAGTGAAGAATTCGGCACAAACGTTAAAAGACCA
GCATTTTCCATCGACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTAC
AACAGTTGGGAAAACTGACGAAAATTTCAACGACTCTTTACCGACTTTAA
CTCGTCGATATTCCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGAT
AAATGTGACCATAGCAACAATCAACTTCGTGTCAACTTACATGGGAACAG
TCTTGAAGATGATTTCGAAAATAGATCATTTACAACTTCACCAACTCGCT
TCAATAGAGAAGATATAGACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071932-exon-scaffold_65-1575043694:24733..25249 | TCONS_00071932-exon-scaffold_65-1575043694:24733..25249 | Clytia hemisphaerica | exon |
| TCONS_00071932-exon-scaffold_65-1575043694:24130..24500 | TCONS_00071932-exon-scaffold_65-1575043694:24130..24500 | Clytia hemisphaerica | exon |
| TCONS_00071932-exon-scaffold_65-1510915933:24733..25249 | TCONS_00071932-exon-scaffold_65-1510915933:24733..25249 | Clytia hemisphaerica | exon |
| TCONS_00071932-exon-scaffold_65-1510915933:24130..24500 | TCONS_00071932-exon-scaffold_65-1510915933:24130..24500 | Clytia hemisphaerica | exon |
| TCONS_00071932-exon-scaffold_65-1491911889:24733..25249 | TCONS_00071932-exon-scaffold_65-1491911889:24733..25249 | Clytia hemisphaerica | exon |
| TCONS_00071932-exon-scaffold_65-1491911889:24130..24500 | TCONS_00071932-exon-scaffold_65-1491911889:24130..24500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:24130..25249 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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