TCONS_00071928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071928
Unique NameTCONS_00071928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071928 ID=TCONS_00071928|Name=TCONS_00071928|organism=Clytia hemisphaerica|type=transcript|length=413bp
acaaaaatggctataacattttgatagaattcgaattgaATTTtctgctc
gttgaaaagataccTATAGTTAAACATGACTGCATTCTTATAgtctttat
tttatatttcCAGGGAATGCAGAAGATTTGTGTAAAGCAGCGTCTGAGGA
TGATTTGTACGTCATCAAAAGGCTTGTAGCAGAAGGATTGGACGTGAACA
TCAAACATCCTCTTGGTTGGtctggtatacatgctgctgcTTTCAGTGGG
CCGTGAAATATTTGATTGAGAAAGGAGCCGATGTCAACGTCTGCGATGAG
TATACTTCTCCCTATAAAATCGCATCACAAAAACGAATGCATGTCTTGGA
TGTTGTCATGCTGCGTGAAGAATGTTTCGACGGGTTGAAGCGGAATGCAG
ATTTCAGTAAATT
Run BLAST on NCBI

transcript from alignment at scaffold_65:149749..151038+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071928 ID=TCONS_00071928|Name=TCONS_00071928|organism=Clytia hemisphaerica|type=transcript|length=1290bp|location=Sequence derived from alignment at scaffold_65:149749..151038+ (Clytia hemisphaerica)
acaaaaatggctataacattttgatagaattcgaattgaATTTtctgctc
gttgaaaagataccTATAGTTAAACATGACTGCATTCTTATAgtctttat
tttatatttcCAGGGAATGCAGAAGATTTGTGTAAAGCAGCGTCTGAGGA
TGATTTGTACGTCATCAAAAGGTACCattcattcatcaaaatttgttttt
tactcCTCCCCTGCTGCACACAGTTAAACCTTGATTTACGCTTTAACCGA
TGGTTGGACAGAGGGTTTGCTCCTATAATTTATCGATGACTTGTATTTTA
CTGCTGCTCGATGAATACGTCACAAGTAACATTGATAAGATCGTTTAGAC
TTCGTTATCTGTATCCCATTTTGACTAAAGCACTTCCCttgaagttttta
ttttctccCAAGAATGCTAACAGTCGCAACAAAACCATTTATCTACTACA
CCTTTAAAAGCATTTAAAATTTCTTGTGTTTTTAGGCTTGTAGCAGAAGG
ATTGGACGTGAACATCAAACATCCTCTTGGTTGGtctggtatacatgctg
ctgcTTTCAGTGGTAACTCAAAGTAATTGTTACATCACCATTTCATTCAT
CAAAACCTACTTTCTCTAAAACTGTTTAGTCGTTCTTTCATATCGTAACG
AACCCCATAAAAGGCCGATGTCAACGATAATCCAAGCAATTATAAACGTT
TTTTGGGGCTGAACCGCGACTCTTTGAAATAAACGAGAAGGGGGTTGAAT
TTTACAGTGGTTGTATTTCTTCGAGCATATGCATCTATTCTAGACCGTAC
CTGCATTTGACTGTATCATTTTTTAGGGCCGTGAAATATTTGATTGAGAA
AGGAGCCGATGTCAACGTCTGCGATGAGTATACTTCTCCCTATAAAATCG
CATCACAAAAACGAATGCATGTCTTGGATGGTATGTCGCTCAAACAATAG
TTTAGTTCCCCGTTTgacacttttttattaaattgtcaCGAAAGTCTGTA
TGAACTGGATGTTATACATCCAGGGAACCCTCGGAAAATTTCTGGACACC
TCAAAGAATCAAAAACTGTAACGGTTTTTTAAATAGCTGACATGTAACAT
GTAATACAATGTGAACTTTATACATGAATTCTTTACTTAGTGAACAAGAT
TAACCCAGTCCTATGTAATGAAAGGTTTAAACTAGTTTTAAATTAACCTT
TTAAATTAAGTGGTTTTCCTTTCTTGTAGTTGTCATGCTGCGTGAAGAAT
GTTTCGACGGGTTGAAGCGGAATGCAGATTTCAGTAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044659XLOC_044659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071928-exon-scaffold_65-1491911889:149749..149919TCONS_00071928-exon-scaffold_65-1491911889:149749..149919Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1510915933:149749..149919TCONS_00071928-exon-scaffold_65-1510915933:149749..149919Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1575043694:149749..149919TCONS_00071928-exon-scaffold_65-1575043694:149749..149919Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1491911889:150234..150310TCONS_00071928-exon-scaffold_65-1491911889:150234..150310Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1510915933:150234..150310TCONS_00071928-exon-scaffold_65-1510915933:150234..150310Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1575043694:150234..150310TCONS_00071928-exon-scaffold_65-1575043694:150234..150310Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1491911889:150575..150678TCONS_00071928-exon-scaffold_65-1491911889:150575..150678Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1510915933:150575..150678TCONS_00071928-exon-scaffold_65-1510915933:150575..150678Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1575043694:150575..150678TCONS_00071928-exon-scaffold_65-1575043694:150575..150678Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1491911889:150978..151038TCONS_00071928-exon-scaffold_65-1491911889:150978..151038Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1510915933:150978..151038TCONS_00071928-exon-scaffold_65-1510915933:150978..151038Clytia hemisphaericaexon
TCONS_00071928-exon-scaffold_65-1575043694:150978..151038TCONS_00071928-exon-scaffold_65-1575043694:150978..151038Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:149749..151038 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.612079	0.653353	0	0	0.559003	0	0	0	0	0	0	0	0	0.353297	0	0	0	0.669575	0.355595	0	0	0	0	0	1.58586	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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