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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071925 ID=TCONS_00071925|Name=TCONS_00071925|organism=Clytia hemisphaerica|type=transcript|length=1844bpRun BLAST on NCBI protein sequence of NotumA protein >TCONS_00071925-protein ID=TCONS_00071925-protein|Name=NotumA protein|organism=Clytia hemisphaerica|type=polypeptide|length=498bp MDHLGLSFLLLTCFWRPTFSDNADSFAHAQEMFEQRLRMHSRHHWNNLSLRun BLAST on NCBI transcript from alignment at scaffold_65:105375..115584+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071925 ID=TCONS_00071925|Name=TCONS_00071925|organism=Clytia hemisphaerica|type=transcript|length=10210bp|location=Sequence derived from alignment at scaffold_65:105375..115584+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_65:105375..115584+ >TCONS_00071925 ID=TCONS_00071925|Name=TCONS_00071925|organism=Clytia hemisphaerica|type=CDS|length=13473bp|location=Sequence derived from alignment at scaffold_65:105375..115584+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00071925 vs. Swiss-Prot (Human)
Match: NOTUM (Palmitoleoyl-protein carboxylesterase NOTUM OS=Homo sapiens GN=NOTUM PE=1 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.596e-26 Identity = 102/342 (29.82%), Postives = 148/342 (43.27%), Query Frame = 2
Query: 386 NADSFAHAQEMFEQRLRMHSRHHWNNLSLKRIHKARRRNATCMDGSDARYYLSRQWESNNWVIHLQGGGSCITFDECRSRSEG--PLGSSLPLDAHITGEWTLSNDPKINPTFHKWNKVLIPYCSGDVFVGRMLKKNHPYRLPMLGHYIFTAVIEDLVRLYKINKKKTKILFGGTSAGGVGVLANAD----YLQEMTTPA-KVRAYNDGGWFTLFRSFGEKHNTNLPQFFHTLATLFE-KHWDGFADKTCQKHMPKSAA--CLYGELAIQYVKTPMFVMTSMWDLYQLNQMVPRSSPVIHLPPKLNQETKYLESFANNSYRSITGLLKKPKNGVFSPACYSH 1381
N DSF + Q L S N R+H + TC DGS A YYL S W++ L+GG C + C SR + L SS TG LS+ P+ NP + N V IPYCS DV+ G K+ +G I V+ +L L + +L G+SAGG GVL N D L+++ PA +VR D GWF + + + T A ++W+G + C++ + C +G ++ P+FV+ ++D QL + +HL + QE L + N R + LK F+PAC SH
Sbjct: 62 NMDSFMAQVKSLAQSLYPCSAQQLNED--LRLHLLLNTSVTCNDGSPAGYYLKESRGSRRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGAS-SKSEKNEYAFMGALIIQEVVREL--LGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGVVPERCRRQFQEGEEWNCFFGYKVYPTLRCPVFVVQWLFDEAQL------TVDNVHLTGQPVQEG--LRLYIQNLGRELRHTLKDVP-ASFAPACLSH 389 The following BLAST results are available for this feature:
BLAST of TCONS_00071925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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