TCONS_00071921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071921
Unique NameTCONS_00071921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071921 ID=TCONS_00071921|Name=TCONS_00071921|organism=Clytia hemisphaerica|type=transcript|length=932bp
TTTAGTgactcttaaaaatataaacTGAGAAAACACTAAAATAATTATCA
AGTATTGTCTGTCAATAATTATCTGTGGAGCACTTATCAAGtataaaatt
catttaaaatGGATGAGAATATCTCACTGATAGAAGAACAATGCAACAAA
GAAATTCAAGCTTATGTCCGCTGTGTAGATGATAATCCTGATTTATGGCC
AACATTATGTCAAATGGAAAAACAAGCGCTCAACCATTGCACGTCTCAAA
ACCCGATGATCAAAGCCATCAATGAGAGTTGCAGTATGCCTTTCAAAGAG
TATAATAAATGCATCAACCAAAATACTGACCAACTTCACCTCTGTCTGGA
TACTCTTGAGGCGTTCAACAAGTGTGCCTCTAAAGCCGCCCAACAGTTCC
TTCAACAGCAAAAATTGACTAAATGAGATTTATAAGAGTGTGTTATTCAG
TTTGGTTCGGTATCCTTTCATGAAGATTTTTGCGCACCTCTATTTCGAAA
ATAGCACTCGGGCGTGAATGTTGCATCTAAaagaatttcatattttttta
gttgaaaatcAAAGAAGTACATTAATTTTAGATAGgaattttatatttca
aattttatattttaagtgacaagattttctattttctagatttctatcaa
aaaatgaaaattcacagAACTACCCGATTTCATTTTTGTTACTTTCTGTT
CGCTTCAGAGCTTTCGATCTTAttttattaaattcaaaagaataaTTCGG
CAAAACAGAGGTTCTTAAAAAGACAATGTAAATTACGTCAATCATTTTTC
CGGATTGAGTACCGAATAGGCTACCAGCGTACTCATTCATTGATTTTACG
ATTATAGAACATTGGAGGGAAATTCGGACCCTAAAGCTAAGATCACCAAA
AATTGTTGGATTCATTGTTGTATTTCATTGGG
Run BLAST on NCBI

protein sequence of TCONS_00071921-protein

>TCONS_00071921-protein ID=TCONS_00071921-protein|Name=TCONS_00071921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MDENISLIEEQCNKEIQAYVRCVDDNPDLWPTLCQMEKQALNHCTSQNPM
IKAINESCSMPFKEYNKCINQNTDQLHLCLDTLEAFNKCASKAAQQFLQQ
QKLTK
Run BLAST on NCBI

transcript from alignment at scaffold_65:99113..100608+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071921 ID=TCONS_00071921|Name=TCONS_00071921|organism=Clytia hemisphaerica|type=transcript|length=1496bp|location=Sequence derived from alignment at scaffold_65:99113..100608+ (Clytia hemisphaerica)
TTTAGTgactcttaaaaatataaacTGAGAAAACACTAAAATAATTATCA
AGTATTGTCTGTCAATAATTATCTGTGGAGCACTTATCAAGtataaaatt
catttaaaatgtaAGTCTAATGTCTTTACTATTTCCTGTATTTgtcactt
ctttttttttcatttgaccaCAAAATCTTTATGGATTAAAAACTAGATTC
AAGATACTGAATTGTGAAAACTCGTAGTTTTCATCGAAACGAACACCTTG
GAAGCCCTGAATGCTTGAAACACTCTTTCGAGTTCATCTCCTCAAAAAGT
TACATCTCCCTTTTTGTTATGCTACATCGATCATACAATCCCACATgatt
attacacccctgtgtcatctACCTCGAGAACAGTTATACGAACAATTTCG
AGAATAGAATAATTGGATGTAAGCTATTTTTCATTCAGGGATGAGAATAT
CTCACTGATAGAAGAACAATGCAACAAAGAAATTCAAGCTTATGTCCGCT
GTGTAGATGATAATCCTGATTTATGGCCAACATTATGTCAAATGGAAAAA
CAAGCGCTCAACCATTGCACGTCTCAAAAGTAAGAGATTCTTTTGTTAAC
TATTCTGGAAGAGTATACGCCTGCAGGGCGGCGTAAAAACAGTGGCGGAC
GTGTAAAAACAGTTGAACAGTTTCTCTTCAAATCTATTTCCGtgtacagt
tgatgctctctaattctcGATTTTCAATAGCGAGCACATCACCTACTATC
ACTTAGCGGTCGATAAAAACGCCTTTTTAAACGCTTTTTGAGTAAAACTT
TATTTTCACATACAGCCCGATGATCAAAGCCATCAATGAGAGTTGCAGTA
TGCCTTTCAAAGAGTATAATAAATGCATCAACCAAAATACTGACCAACTT
CACCTCTGTCTGGATACTCTTGAGGCGTTCAACAAGTGTGCCTCTAAAGC
CGCCCAACAGTTCCTTCAACAGCAAAAATTGACTAAATGAGATTTATAAG
AGTGTGTTATTCAGTTTGGTTCGGTATCCTTTCATGAAGATTTTTGCGCA
CCTCTATTTCGAAAATAGCACTCGGGCGTGAATGTTGCATCTAAaagaat
ttcatatttttttagttgaaaatcAAAGAAGTACATTAATTTTAGATAGg
aattttatatttcaaattttatattttaagtgacaagattttctattttc
tagatttctatcaaaaaatgaaaattcacagAACTACCCGATTTCATTTT
TGTTACTTTCTGTTCGCTTCAGAGCTTTCGATCTTAttttattaaattca
aaagaataaTTCGGCAAAACAGAGGTTCTTAAAAAGACAATGTAAATTAC
GTCAATCATTTTTCCGGATTGAGTACCGAATAGGCTACCAGCGTACTCAT
TCATTGATTTTACGATTATAGAACATTGGAGGGAAATTCGGACCCTAAAG
CTAAGATCACCAAAAATTGTTGGATTCATTGTTGTATTTCATTGGG

Coding sequence (CDS) from alignment at scaffold_65:99113..100608+

>TCONS_00071921 ID=TCONS_00071921|Name=TCONS_00071921|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_65:99113..100608+ (Clytia hemisphaerica)
atGGATGAGAATATCTCACTGATAGAAGAACAATGCAACAAAGAAATTCA
AGCTTATGTCCGCTGTGTAGATGATAATCCTGATTTATGGCCAACATTAT
GTCAAATGGAAAAACAAGCGCTCAACCATTGCACGTCTCAAAACCCGATG
ATCAAAGCCATCAATGAGAGTTGCAGTATGCCTTTCAAAGAGTATAATAA
ATGCATCAACCAAAATACTGACCAACTTCACCTCTGTCTGGATACTCTTG
AGGCGTTCAACAAGTGTGCCTCTAAAGCCGCCCAACAGTTCCTTCAACAG
CAAAAATTGACTAAATGAatGGATGAGAATATCTCACTGATAGAAGAACA
ATGCAACAAAGAAATTCAAGCTTATGTCCGCTGTGTAGATGATAATCCTG
ATTTATGGCCAACATTATGTCAAATGGAAAAACAAGCGCTCAACCATTGC
ACGTCTCAAAACCCGATGATCAAAGCCATCAATGAGAGTTGCAGTATGCC
TTTCAAAGAGTATAATAAATGCATCAACCAAAATACTGACCAACTTCACC
TCTGTCTGGATACTCTTGAGGCGTTCAACAAGTGTGCCTCTAAAGCCGCC
CAACAGTTCCTTCAACAGCAAAAATTGACTAAATGAatGGATGAGAATAT
CTCACTGATAGAAGAACAATGCAACAAAGAAATTCAAGCTTATGTCCGCT
GTGTAGATGATAATCCTGATTTATGGCCAACATTATGTCAAATGGAAAAA
CAAGCGCTCAACCATTGCACGTCTCAAAACCCGATGATCAAAGCCATCAA
TGAGAGTTGCAGTATGCCTTTCAAAGAGTATAATAAATGCATCAACCAAA
ATACTGACCAACTTCACCTCTGTCTGGATACTCTTGAGGCGTTCAACAAG
TGTGCCTCTAAAGCCGCCCAACAGTTCCTTCAACAGCAAAAATTGACTAA
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044657XLOC_044657Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071921-proteinTCONS_00071921-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071921-exon-scaffold_65-1491911889:99113..99222TCONS_00071921-exon-scaffold_65-1491911889:99113..99222Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1510915933:99113..99222TCONS_00071921-exon-scaffold_65-1510915933:99113..99222Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1575043694:99113..99222TCONS_00071921-exon-scaffold_65-1575043694:99113..99222Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1491911889:99551..99691TCONS_00071921-exon-scaffold_65-1491911889:99551..99691Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1510915933:99551..99691TCONS_00071921-exon-scaffold_65-1510915933:99551..99691Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1575043694:99551..99691TCONS_00071921-exon-scaffold_65-1575043694:99551..99691Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1491911889:99928..100608TCONS_00071921-exon-scaffold_65-1491911889:99928..100608Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1510915933:99928..100608TCONS_00071921-exon-scaffold_65-1510915933:99928..100608Clytia hemisphaericaexon
TCONS_00071921-exon-scaffold_65-1575043694:99928..100608TCONS_00071921-exon-scaffold_65-1575043694:99928..100608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:99113..100608 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.83263	7.65619	1.88903	0.924062	5.8233	5.33373	8.83225	11.517	10.7098	12.4975	8.60064	9.5427	4.96053	5.86328	15.3529	16.4162	30.4272	28.997	2.03435	3.27507	11.007	11.7327	29.9319	27.2636	22.8651	20.3595	23.0787	16.9468	25.5981	23.084
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031731CX9C
IPR010625CHCH
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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