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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071918 ID=TCONS_00071918|Name=TCONS_00071918|organism=Clytia hemisphaerica|type=transcript|length=2658bp
ACTTTAGTTTTAACCAATTTTGATTCTAATCATTTTATTGGAAATCTTTT
AGGATATAAAAACATACAATAAAGATGACATCAAAGAGCCCAATTGAAGA
TAGTGACAGCGATGATTCTGAGATCAATTTATCATCTATGCTGGGTGCAT
GTAACTTGACAGATGATCAAGACACCGCATATAAAAGTTCTTTGAACTTA
AATGAAGATCTGGTTGGAAATGTATCGAAATTTATTGCTTATCCGCCTGG
ATCAACGGATAAATTGAAAACTGGTTATTTGATGTTCCATTCTTGTTTTC
AAAGTGGGAATCTGGGTCGTGTGGATTGGATATCTGATATGGAATATGAT
TTGTTTGTTCGACCAGACACATGTAATCCCAGATACAGAGTCTGGTTCAA
TTTTACTGTTCAGAATGTCAGAGCTGGTCAAAGGGTAATATTCAATATTG
TCAATTTCAGCAAAAGCAAAAGCTTATATCGTGAAGGAATGGCTCCTATG
GTTAAATCAACAAGTCGTCCCAAATGGCAGAGAATACCtgcaaaaaatgt
gttttattATCGTTCCCCTGATCATCATAAAAATTACGTAATGTCTTTCG
CTTTTGCGTTTGATAAAGAAAACGATGTGTACCAGTTTGCATATTGTTAT
CCTTATACTTATAATAAATTGCAAAAGTTCCTTGGAGATATTGAGAAGCT
GGATTTGAATTATGTTCAACGTAGAAAGCTCTGTGTTTCTGTCCAACAAA
GGAGCGTTGATTTGTTAACTATAACTGCTCCTAAAAACCAAAAGGAAAAC
ATCAAACGAAAAGTTGTCTTCTTCACTGCTCGGGTACATCCTGGTGAAAC
GCCTGCATCTTTTGTTTGTCATGGTATTATCAGTTTCCTGATATCTGATC
ATCCCATTGCTCAGGTTCTAAGAGACCACATTGTTTTCATGATTGTACCC
ATGCTGAATCCTGATGGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGAT
GGGTTTTGATTTGAATCGATATTGGCATGAACCGTCACCCTGGGCTCACC
CATCTATCGTTGCCACTAAACAATTATTGCTCGACATGAACGAAGATCCT
CAAACttctttggatttttatatCGATTTGCATGCTCACTCTACAGCAAT
GAATGGATTTATGTATGGGAACGTTTACGAAGAAGAGGAGCGGTTTGATC
AACATTCAGTATTCCCACGTTTGTTGTGTTCCAATGCTGAAGATTTTTCT
TATTCTAACACCTCTTTCAACCGCNGCGTTTGATAAAGAAAACGATGTGT
ACCAGTTTGCATATTGTTATCCTTATACTTATAATAAATTGCAAAAGTTC
CTTGGAGATATTGAGAAACTGGATTTGAATTATGTTCAACGTAGAAAGCT
CTGTGTTTCTGTCCAACAAAGGTGCGTTGATTTGTTAACTATAACTGCTC
CTAAAAACCTAAAGGAAAACATCAAACGAAAAGTTGTCTTCTTCACTGCT
CGGGTACATCCTGGTGAAACGCCTGCATCTTTTGTTTGTCATGGTATTAT
CAGTTTCCTGATATCTGATCATCCCATTGCTCAGGTTCTAAGAGACCACA
TTGTTTTCATGATTGTACCCATGCTGAATCCTGATGGTGTTGTTCTTGGT
AATTATCGTTGTTCTCTGATGGGTTTTGATTTGAATCGATATTGGCATGA
ACCGTCACCCTGGGCTCACCCATCTATCGTTGCCACTAAACAATTATTGC
TCGACATGAACGAAGATCCTCAAACttctttggatttttatatCGATTTG
CATGCTCACTCTACAGCAATGAATGGATTTATGTATGGGAACGTTTACGA
AGAAGAGGAGCGGTTTGATCAACATTCAGTATTCCCACGATTGTTGTGTT
CCAATGCTGAAGATTTTTCTTATTCTAACACCTCTTTCAACCGTGATGCA
TTAAAAGCTGGGACTGGTCGTCGAACTTTAGGTTCATGTCTCAGTGAACA
CTCAAACTGCTACACACTTGAAGTATCCTTTTTCTGTTATATCAATGGAA
CATCTAACCTTGTACCTTACACCGAAGAAGGTTTTCTCAAACTTGGGAAT
AATGTTGCTCGTACCTTTATGGATTATTATAAATTATCTTTACAAGTTGC
CAAAAagatcaacaaaataaatatcaGTGGTGAAAGACTGTCAGCTAAAA
GAAGATCAACATCAAGACGTAAAAGCACACCCATAAGTGTCAAAGACTTG
ATCAACCATTCTGAGAATACTTTCTACAGTGCTAAAACTAATTCCATGGG
GCggttcaaaatgaaacaaacttTTCGCAAATGATTTAGATTAATAAATT
TTAATGCATAtttgttaaagatttttaagGTTCGTCGCAGCCCTATTTTC
AGTTCCACTTGACATAAAGAAAAATTTGGTCCCTTAATTGTCTAAAATAG
AGCCTGTCTGCttgtaaaataattttctttcttggGAAATTCTCATAGAG
GAACGTCATGAAGGACGTTGAACGCTAAAggataaattttccaaaatttt
tgtttttccaaattgccaaaaaagatttaatgttcagtttttataattta
attttttatataagtgCATTTTACTGTAAAAACCAATTCCCGTAGGCTAT
TATTGAAG Run BLAST on NCBI transcript from alignment at scaffold_65:90791..93448+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071918 ID=TCONS_00071918|Name=TCONS_00071918|organism=Clytia hemisphaerica|type=transcript|length=2658bp|location=Sequence derived from alignment at scaffold_65:90791..93448+ (Clytia hemisphaerica)
ACTTTAGTTTTAACCAATTTTGATTCTAATCATTTTATTGGAAATCTTTT
AGGATATAAAAACATACAATAAAGATGACATCAAAGAGCCCAATTGAAGA
TAGTGACAGCGATGATTCTGAGATCAATTTATCATCTATGCTGGGTGCAT
GTAACTTGACAGATGATCAAGACACCGCATATAAAAGTTCTTTGAACTTA
AATGAAGATCTGGTTGGAAATGTATCGAAATTTATTGCTTATCCGCCTGG
ATCAACGGATAAATTGAAAACTGGTTATTTGATGTTCCATTCTTGTTTTC
AAAGTGGGAATCTGGGTCGTGTGGATTGGATATCTGATATGGAATATGAT
TTGTTTGTTCGACCAGACACATGTAATCCCAGATACAGAGTCTGGTTCAA
TTTTACTGTTCAGAATGTCAGAGCTGGTCAAAGGGTAATATTCAATATTG
TCAATTTCAGCAAAAGCAAAAGCTTATATCGTGAAGGAATGGCTCCTATG
GTTAAATCAACAAGTCGTCCCAAATGGCAGAGAATACCtgcaaaaaatgt
gttttattATCGTTCCCCTGATCATCATAAAAATTACGTAATGTCTTTCG
CTTTTGCGTTTGATAAAGAAAACGATGTGTACCAGTTTGCATATTGTTAT
CCTTATACTTATAATAAATTGCAAAAGTTCCTTGGAGATATTGAGAAGCT
GGATTTGAATTATGTTCAACGTAGAAAGCTCTGTGTTTCTGTCCAACAAA
GGAGCGTTGATTTGTTAACTATAACTGCTCCTAAAAACCAAAAGGAAAAC
ATCAAACGAAAAGTTGTCTTCTTCACTGCTCGGGTACATCCTGGTGAAAC
GCCTGCATCTTTTGTTTGTCATGGTATTATCAGTTTCCTGATATCTGATC
ATCCCATTGCTCAGGTTCTAAGAGACCACATTGTTTTCATGATTGTACCC
ATGCTGAATCCTGATGGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGAT
GGGTTTTGATTTGAATCGATATTGGCATGAACCGTCACCCTGGGCTCACC
CATCTATCGTTGCCACTAAACAATTATTGCTCGACATGAACGAAGATCCT
CAAACttctttggatttttatatCGATTTGCATGCTCACTCTACAGCAAT
GAATGGATTTATGTATGGGAACGTTTACGAAGAAGAGGAGCGGTTTGATC
AACATTCAGTATTCCCACGTTTGTTGTGTTCCAATGCTGAAGATTTTTCT
TATTCTAACACCTCTTTCAACCGCNGCGTTTGATAAAGAAAACGATGTGT
ACCAGTTTGCATATTGTTATCCTTATACTTATAATAAATTGCAAAAGTTC
CTTGGAGATATTGAGAAACTGGATTTGAATTATGTTCAACGTAGAAAGCT
CTGTGTTTCTGTCCAACAAAGGTGCGTTGATTTGTTAACTATAACTGCTC
CTAAAAACCTAAAGGAAAACATCAAACGAAAAGTTGTCTTCTTCACTGCT
CGGGTACATCCTGGTGAAACGCCTGCATCTTTTGTTTGTCATGGTATTAT
CAGTTTCCTGATATCTGATCATCCCATTGCTCAGGTTCTAAGAGACCACA
TTGTTTTCATGATTGTACCCATGCTGAATCCTGATGGTGTTGTTCTTGGT
AATTATCGTTGTTCTCTGATGGGTTTTGATTTGAATCGATATTGGCATGA
ACCGTCACCCTGGGCTCACCCATCTATCGTTGCCACTAAACAATTATTGC
TCGACATGAACGAAGATCCTCAAACttctttggatttttatatCGATTTG
CATGCTCACTCTACAGCAATGAATGGATTTATGTATGGGAACGTTTACGA
AGAAGAGGAGCGGTTTGATCAACATTCAGTATTCCCACGATTGTTGTGTT
CCAATGCTGAAGATTTTTCTTATTCTAACACCTCTTTCAACCGTGATGCA
TTAAAAGCTGGGACTGGTCGTCGAACTTTAGGTTCATGTCTCAGTGAACA
CTCAAACTGCTACACACTTGAAGTATCCTTTTTCTGTTATATCAATGGAA
CATCTAACCTTGTACCTTACACCGAAGAAGGTTTTCTCAAACTTGGGAAT
AATGTTGCTCGTACCTTTATGGATTATTATAAATTATCTTTACAAGTTGC
CAAAAagatcaacaaaataaatatcaGTGGTGAAAGACTGTCAGCTAAAA
GAAGATCAACATCAAGACGTAAAAGCACACCCATAAGTGTCAAAGACTTG
ATCAACCATTCTGAGAATACTTTCTACAGTGCTAAAACTAATTCCATGGG
GCggttcaaaatgaaacaaacttTTCGCAAATGATTTAGATTAATAAATT
TTAATGCATAtttgttaaagatttttaagGTTCGTCGCAGCCCTATTTTC
AGTTCCACTTGACATAAAGAAAAATTTGGTCCCTTAATTGTCTAAAATAG
AGCCTGTCTGCttgtaaaataattttctttcttggGAAATTCTCATAGAG
GAACGTCATGAAGGACGTTGAACGCTAAAggataaattttccaaaatttt
tgtttttccaaattgccaaaaaagatttaatgttcagtttttataattta
attttttatataagtgCATTTTACTGTAAAAACCAATTCCCGTAGGCTAT
TATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071918-exon-scaffold_65-1491911889:90791..93448 | TCONS_00071918-exon-scaffold_65-1491911889:90791..93448 | Clytia hemisphaerica | exon |
| TCONS_00071918-exon-scaffold_65-1510915933:90791..93448 | TCONS_00071918-exon-scaffold_65-1510915933:90791..93448 | Clytia hemisphaerica | exon |
| TCONS_00071918-exon-scaffold_65-1575043694:90791..93448 | TCONS_00071918-exon-scaffold_65-1575043694:90791..93448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:90791..93448 + |
Blast
BLAST of TCONS_00071918 vs. Swiss-Prot (Human)
Match: CBPC6 (Cytosolic carboxypeptidase 6 OS=Homo sapiens GN=AGBL4 PE=2 SV=3) HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0 Identity = 247/359 (68.80%), Postives = 302/359 (84.12%), Query Frame = 3
Query: 201 NEDLVG-NVSKFIAYPPGSTDKLKTGYLMFHSCFQSGNLGRVDWISDMEYDLFVRPDTCNPRYRVWFNFTVQNVRAGQRVIFNIVNFSKSKSLYREGMAPMVKSTSRPKWQRIPAKNVFYYRSPDHHKNYVMSFAFAFDKENDVYQFAYCYPYTYNKLQKFLGDIEKLDLNYVQRRKLCVSVQQRSVDLLTITAPKNQKENIKRKVVFFTARVHPGETPASFVCHGIISFLISDHPIAQVLRDHIVFMIVPMLNPDGVVLGNYRCSLMGFDLNRYWHEPSPWAHPSIVATKQLLLDMNEDPQTSLDFYIDLHAHSTAMNGFMYGNVYEEEERFDQHSVFPRLLCSNAEDFSYSNTSFNR 1274
N+D +G NVSK+I P G + K G+L+F +CF+SGNLGRVD +S+ EYDLF+RPDTCNPR+RVWFNFTV+NV+ QRVIFNIVNFSK+KSLYR+GMAPMVKSTSRPKWQR+P KNV+YYR PDH KNYVMSFAF FD+E D+YQFAYCYPYTY + Q +L ++K +++Y R +L SVQQR +DLLTIT+P N +E ++KVVF T RVHPGETP+SFVC GII FL+S HPIA VLR+++VF I PMLNPDGV LGNYRCSLMGFDLNR+W +PSPW HP++ KQL++ M DP+TSL+FYID+HAHST MNGFMYGN++E+EERF + ++FP+LLC NAEDFSYS+TSFNR
Sbjct: 17 NDDAIGGNVSKYIVLPTGYCGQPKKGHLIFDACFESGNLGRVDQVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYRDGMAPMVKSTSRPKWQRLPPKNVYYYRCPDHRKNYVMSFAFCFDREEDIYQFAYCYPYTYTRFQHYLDSLQKRNMDYFFREQLGQSVQQRKLDLLTITSPDNLREGAEQKVVFITGRVHPGETPSSFVCQGIIDFLVSQHPIACVLREYLVFKIAPMLNPDGVYLGNYRCSLMGFDLNRHWLDPSPWVHPTLHGVKQLIVQMYNDPKTSLEFYIDIHAHSTMMNGFMYGNIFEDEERFQRQAIFPKLLCQNAEDFSYSSTSFNR 375 HSP 2 Score: 426.787 bits (1096), Expect = 8.085e-139 Identity = 194/293 (66.21%), Postives = 240/293 (81.91%), Query Frame = 1
Query: 1279 FDKENDVYQFAYCYPYTYNKLQKFLGDIEKLDLNYVQRRKLCVSVQQRCVDLLTITAPKNLKENIKRKVVFFTARVHPGETPASFVCHGIISFLISDHPIAQVLRDHIVFMIVPMLNPDGVVLGNYRCSLMGFDLNRYWHEPSPWAHPSIVATKQLLLDMNEDPQTSLDFYIDLHAHSTAMNGFMYGNVYEEEERFDQHSVFPRLLCSNAEDFSYSNTSFNRDALKAGTGRRTLGSCLSEHSNCYTLEVSFFCY-INGTSNLVPYTEEGFLKLGNNVARTFMDYYKLSLQVAK 2154
FD+E D+YQFAYCYPYTY + Q +L ++K +++Y R +L SVQQR +DLLTIT+P NL+E ++KVVF T RVHPGETP+SFVC GII FL+S HPIA VLR+++VF I PMLNPDGV LGNYRCSLMGFDLNR+W +PSPW HP++ KQL++ M DP+TSL+FYID+HAHST MNGFMYGN++E+EERF + ++FP+LLC NAEDFSYS+TSFNRDA+KAGTGRR LG L S CYTLEVSF+ Y I+GT+ VPYTEE ++KLG NVARTF+DYY+L+ V K
Sbjct: 154 FDREEDIYQFAYCYPYTYTRFQHYLDSLQKRNMDYFFREQLGQSVQQRKLDLLTITSPDNLREGAEQKVVFITGRVHPGETPSSFVCQGIIDFLVSQHPIACVLREYLVFKIAPMLNPDGVYLGNYRCSLMGFDLNRHWLDPSPWVHPTLHGVKQLIVQMYNDPKTSLEFYIDIHAHSTMMNGFMYGNIFEDEERFQRQAIFPKLLCQNAEDFSYSSTSFNRDAVKAGTGRRFLGGLLDHTSYCYTLEVSFYSYIISGTTAAVPYTEEAYMKLGRNVARTFLDYYRLNPVVEK 446
The following BLAST results are available for this feature:
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