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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071917 ID=TCONS_00071917|Name=TCONS_00071917|organism=Clytia hemisphaerica|type=transcript|length=2223bp
ACTTTAGTTTTAACCAATTTTGATTCTAATCATTTTATTGGAAATCTTTT
AGGATATAAAAACATACAATAAAGATGACATCAAAGAGCCCAATTGAAGA
TAGTGACAGCGATGATTCTGAGATCAATTTATCATCTATGCTGGGTGCAT
GTAACTTGACAGATGATCAAGACACCGCATATAAAAGTTCTTTGAACTTA
AATGAAGATCTGGTTGGAAATGTATCGAAATTTATTGCTTATCCGCCTGG
ATCAACGGATAAATTGAAAACTGGTTATTTGATGTTCCATTCTTGTTTTC
AAAGTGGGAATCTGGGTCGTGTGGATTGGATATCTGATATGGAATATGAT
TTGTTTGTTCGACCAGACACATGTAATCCCAGATACAGAGTCTGGTTCAA
TTTTACTGTTCAGAATGTCAGAGCTGGTCAAAGGGTAATATTCAATATTG
TCAATTTCAGCAAAAGCAAAAGCTTATATCGTGAAGGAATGGCTCCTATG
GTTAAATCAACAAGTCGTCCCAAATGGCAGAGAATACCtgcaaaaaatgt
gttttattATCGTTCCCCTGATCATCATAAAAATTACGTAATGTCTTTCG
CTTTTGCGTTTGATAAAGAAAACGATGTGTACCAGTTTGCATATTGTTAT
CCTTATACTTATAATAAATTGCAAAAGTTCCTTGGAGATATTGAGAAGCT
GGATTTGAATTATGTTCAACGTAGAAAGCTCTGTGTTTCTGTCCAACAAA
GGAGCGTTGATTTGTTAACTATAACTGCTCCTAAAAACCAAAAGGAAAAC
ATCAAACGAAAAGTTGTCTTCTTCACTGCTCGGGTACATCCTGGTGAAAC
GCCTGCATCTTTTGTTTGTCATGGTATTATCAGTTTCCTGATATCTGATC
ATCCCATTGCTCAGGTTCTAAGAGACCACATTGTTTTCATGATTGTACCC
ATGCTGAATCCTGATGGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGAT
GGGTTTTGATTTGAATCGATATTGGCATGAACCGTCACCCTGGGCTCACC
CATCTATCGTTGCCACTAAACAATTATTGCTCGACGCCTGCATCTTTTGT
TTGTCATGGTATTATCAGTTTCCTGATATCTGATCATCCCATTGCTCAGG
TTCTAAGAGACCACATTGTTTTCATGATTGTACCCATGCTGAATCCTGAT
GGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGATGGGTTTTGATTTGAA
TCGATATTGGCATGAACCGTCACCCTGGGCTCACCCATCTATCGTTGCCA
CTAAACAATTATTGCTCGACATGAACGAAGATCCTCAAACttctttggat
ttttatatCGATTTGCATGCTCACTCTACAGCAATGAATGGATTTATGTA
TGGGAACGTTTACGAAGAAGAGGAGCGGTTTGATCAACATTCAGTATTCC
CACGATTGTTGTGTTCCAATGCTGAAGATTTTTCTTATTCTAACACCTCT
TTCAACCGTGATGCATTAAAAGCTGGGACTGGTCGTCGAACTTTAGGTTC
ATGTCTCAGTGAACACTCAAACTGCTACACACTTGAAGTATCCTTTTTCT
GTTATATCAATGGAACATCTAACCTTGTACCTTACACCGAAGAAGGTTTT
CTCAAACTTGGGAATAATGTTGCTCGTACCTTTATGGATTATTATAAATT
ATCTTTACAAGTTGCCAAAAagatcaacaaaataaatatcaGTGGTGAAA
GACTGTCAGCTAAAAGAAGATCAACATCAAGACGTAAAAGCACACCCATA
AGTGTCAAAGACTTGATCAACCATTCTGAGAATACTTTCTACAGTGCTAA
AACTAATTCCATGGGGCggttcaaaatgaaacaaacttTTCGCAAATGAT
TTAGATTAATAAATTTTAATGCATAtttgttaaagatttttaagGTTCGT
CGCAGCCCTATTTTCAGTTCCACTTGACATAAAGAAAAATTTGGTCCCTT
AATTGTCTAAAATAGAGCCTGTCTGCttgtaaaataattttctttcttgg
GAAATTCTCATAGAGGAACGTCATGAAGGACGTTGAACGCTAAAggataa
attttccaaaatttttgtttttccaaattgccaaaaaagatttaatgttc
agtttttataatttaattttttatataagtgCATTTTACTGTAAAAACCA
ATTCCCGTAGGCTATTATTGAAG Run BLAST on NCBI protein sequence of TCONS_00071917-protein >TCONS_00071917-protein ID=TCONS_00071917-protein|Name=TCONS_00071917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MTSKSPIEDSDSDDSEINLSSMLGACNLTDDQDTAYKSSLNLNEDLVGNV
SKFIAYPPGSTDKLKTGYLMFHSCFQSGNLGRVDWISDMEYDLFVRPDTC
NPRYRVWFNFTVQNVRAGQRVIFNIVNFSKSKSLYREGMAPMVKSTSRPK
WQRIPAKNVFYYRSPDHHKNYVMSFAFAFDKENDVYQFAYCYPYTYNKLQ
KFLGDIEKLDLNYVQRRKLCVSVQQRSVDLLTITAPKNQKENIKRKVVFF
TARVHPGETPASFVCHGIISFLISDHPIAQVLRDHIVFMIVPMLNPDGVV
LGNYRCSLMGFDLNRYWHEPSPWAHPSIVATKQLLLDACIFCLSWYYQFP
DI Run BLAST on NCBI transcript from alignment at scaffold_65:90791..93448+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071917 ID=TCONS_00071917|Name=TCONS_00071917|organism=Clytia hemisphaerica|type=transcript|length=2658bp|location=Sequence derived from alignment at scaffold_65:90791..93448+ (Clytia hemisphaerica)
ACTTTAGTTTTAACCAATTTTGATTCTAATCATTTTATTGGAAATCTTTT
AGGATATAAAAACATACAATAAAGATGACATCAAAGAGCCCAATTGAAGA
TAGTGACAGCGATGATTCTGAGATCAATTTATCATCTATGCTGGGTGCAT
GTAACTTGACAGATGATCAAGACACCGCATATAAAAGTTCTTTGAACTTA
AATGAAGATCTGGTTGGAAATGTATCGAAATTTATTGCTTATCCGCCTGG
ATCAACGGATAAATTGAAAACTGGTTATTTGATGTTCCATTCTTGTTTTC
AAAGTGGGAATCTGGGTCGTGTGGATTGGATATCTGATATGGAATATGAT
TTGTTTGTTCGACCAGACACATGTAATCCCAGATACAGAGTCTGGTTCAA
TTTTACTGTTCAGAATGTCAGAGCTGGTCAAAGGGTAATATTCAATATTG
TCAATTTCAGCAAAAGCAAAAGCTTATATCGTGAAGGAATGGCTCCTATG
GTTAAATCAACAAGTCGTCCCAAATGGCAGAGAATACCtgcaaaaaatgt
gttttattATCGTTCCCCTGATCATCATAAAAATTACGTAATGTCTTTCG
CTTTTGCGTTTGATAAAGAAAACGATGTGTACCAGTTTGCATATTGTTAT
CCTTATACTTATAATAAATTGCAAAAGTTCCTTGGAGATATTGAGAAGCT
GGATTTGAATTATGTTCAACGTAGAAAGCTCTGTGTTTCTGTCCAACAAA
GGAGCGTTGATTTGTTAACTATAACTGCTCCTAAAAACCAAAAGGAAAAC
ATCAAACGAAAAGTTGTCTTCTTCACTGCTCGGGTACATCCTGGTGAAAC
GCCTGCATCTTTTGTTTGTCATGGTATTATCAGTTTCCTGATATCTGATC
ATCCCATTGCTCAGGTTCTAAGAGACCACATTGTTTTCATGATTGTACCC
ATGCTGAATCCTGATGGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGAT
GGGTTTTGATTTGAATCGATATTGGCATGAACCGTCACCCTGGGCTCACC
CATCTATCGTTGCCACTAAACAATTATTGCTCGACATGAACGAAGATCCT
CAAACttctttggatttttatatCGATTTGCATGCTCACTCTACAGCAAT
GAATGGATTTATGTATGGGAACGTTTACGAAGAAGAGGAGCGGTTTGATC
AACATTCAGTATTCCCACGTTTGTTGTGTTCCAATGCTGAAGATTTTTCT
TATTCTAACACCTCTTTCAACCGCNGCGTTTGATAAAGAAAACGATGTGT
ACCAGTTTGCATATTGTTATCCTTATACTTATAATAAATTGCAAAAGTTC
CTTGGAGATATTGAGAAACTGGATTTGAATTATGTTCAACGTAGAAAGCT
CTGTGTTTCTGTCCAACAAAGGTGCGTTGATTTGTTAACTATAACTGCTC
CTAAAAACCTAAAGGAAAACATCAAACGAAAAGTTGTCTTCTTCACTGCT
CGGGTACATCCTGGTGAAACGCCTGCATCTTTTGTTTGTCATGGTATTAT
CAGTTTCCTGATATCTGATCATCCCATTGCTCAGGTTCTAAGAGACCACA
TTGTTTTCATGATTGTACCCATGCTGAATCCTGATGGTGTTGTTCTTGGT
AATTATCGTTGTTCTCTGATGGGTTTTGATTTGAATCGATATTGGCATGA
ACCGTCACCCTGGGCTCACCCATCTATCGTTGCCACTAAACAATTATTGC
TCGACATGAACGAAGATCCTCAAACttctttggatttttatatCGATTTG
CATGCTCACTCTACAGCAATGAATGGATTTATGTATGGGAACGTTTACGA
AGAAGAGGAGCGGTTTGATCAACATTCAGTATTCCCACGATTGTTGTGTT
CCAATGCTGAAGATTTTTCTTATTCTAACACCTCTTTCAACCGTGATGCA
TTAAAAGCTGGGACTGGTCGTCGAACTTTAGGTTCATGTCTCAGTGAACA
CTCAAACTGCTACACACTTGAAGTATCCTTTTTCTGTTATATCAATGGAA
CATCTAACCTTGTACCTTACACCGAAGAAGGTTTTCTCAAACTTGGGAAT
AATGTTGCTCGTACCTTTATGGATTATTATAAATTATCTTTACAAGTTGC
CAAAAagatcaacaaaataaatatcaGTGGTGAAAGACTGTCAGCTAAAA
GAAGATCAACATCAAGACGTAAAAGCACACCCATAAGTGTCAAAGACTTG
ATCAACCATTCTGAGAATACTTTCTACAGTGCTAAAACTAATTCCATGGG
GCggttcaaaatgaaacaaacttTTCGCAAATGATTTAGATTAATAAATT
TTAATGCATAtttgttaaagatttttaagGTTCGTCGCAGCCCTATTTTC
AGTTCCACTTGACATAAAGAAAAATTTGGTCCCTTAATTGTCTAAAATAG
AGCCTGTCTGCttgtaaaataattttctttcttggGAAATTCTCATAGAG
GAACGTCATGAAGGACGTTGAACGCTAAAggataaattttccaaaatttt
tgtttttccaaattgccaaaaaagatttaatgttcagtttttataattta
attttttatataagtgCATTTTACTGTAAAAACCAATTCCCGTAGGCTAT
TATTGAAG Coding sequence (CDS) from alignment at scaffold_65:90791..93448+ >TCONS_00071917 ID=TCONS_00071917|Name=TCONS_00071917|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_65:90791..93448+ (Clytia hemisphaerica)
ATGACATCAAAGAGCCCAATTGAAGATAGTGACAGCGATGATTCTGAGAT
CAATTTATCATCTATGCTGGGTGCATGTAACTTGACAGATGATCAAGACA
CCGCATATAAAAGTTCTTTGAACTTAAATGAAGATCTGGTTGGAAATGTA
TCGAAATTTATTGCTTATCCGCCTGGATCAACGGATAAATTGAAAACTGG
TTATTTGATGTTCCATTCTTGTTTTCAAAGTGGGAATCTGGGTCGTGTGG
ATTGGATATCTGATATGGAATATGATTTGTTTGTTCGACCAGACACATGT
AATCCCAGATACAGAGTCTGGTTCAATTTTACTGTTCAGAATGTCAGAGC
TGGTCAAAGGGTAATATTCAATATTGTCAATTTCAGCAAAAGCAAAAGCT
TATATCGTGAAGGAATGGCTCCTATGGTTAAATCAACAAGTCGTCCCAAA
TGGCAGAGAATACCtgcaaaaaatgtgttttattATCGTTCCCCTGATCA
TCATAAAAATTACGTAATGTCTTTCGCTTTTGCGTTTGATAAAGAAAACG
ATGTGTACCAGTTTGCATATTGTTATCCTTATACTTATAATAAATTGCAA
AAGTTCCTTGGAGATATTGAGAAGCTGGATTTGAATTATGTTCAACGTAG
AAAGCTCTGTGTTTCTGTCCAACAAAGGAGCGTTGATTTGTTAACTATAA
CTGCTCCTAAAAACCAAAAGGAAAACATCAAACGAAAAGTTGTCTTCTTC
ACTGCTCGGGTACATCCTGGTGAAACGCCTGCATCTTTTGTTTGTCATGG
TATTATCAGTTTCCTGATATCTGATCATCCCATTGCTCAGGTTCTAAGAG
ACCACATTGTTTTCATGATTGTACCCATGCTGAATCCTGATGGTGTTGTT
CTTGGTAATTATCGTTGTTCTCTGATGGGTTTTGATTTGAATCGATATTG
GCATGAACCGTCACCCTGGGCTCACCCATCTATCGTTGCCACTAAACAAT
TATTGCTCGACGCCTGCATCTTTTGTTTGTCATGGTATTATCAGTTTCCT
GATATCTGAATGACATCAAAGAGCCCAATTGAAGATAGTGACAGCGATGA
TTCTGAGATCAATTTATCATCTATGCTGGGTGCATGTAACTTGACAGATG
ATCAAGACACCGCATATAAAAGTTCTTTGAACTTAAATGAAGATCTGGTT
GGAAATGTATCGAAATTTATTGCTTATCCGCCTGGATCAACGGATAAATT
GAAAACTGGTTATTTGATGTTCCATTCTTGTTTTCAAAGTGGGAATCTGG
GTCGTGTGGATTGGATATCTGATATGGAATATGATTTGTTTGTTCGACCA
GACACATGTAATCCCAGATACAGAGTCTGGTTCAATTTTACTGTTCAGAA
TGTCAGAGCTGGTCAAAGGGTAATATTCAATATTGTCAATTTCAGCAAAA
GCAAAAGCTTATATCGTGAAGGAATGGCTCCTATGGTTAAATCAACAAGT
CGTCCCAAATGGCAGAGAATACCtgcaaaaaatgtgttttattATCGTTC
CCCTGATCATCATAAAAATTACGTAATGTCTTTCGCTTTTGCGTTTGATA
AAGAAAACGATGTGTACCAGTTTGCATATTGTTATCCTTATACTTATAAT
AAATTGCAAAAGTTCCTTGGAGATATTGAGAAGCTGGATTTGAATTATGT
TCAACGTAGAAAGCTCTGTGTTTCTGTCCAACAAAGGAGCGTTGATTTGT
TAACTATAACTGCTCCTAAAAACCAAAAGGAAAACATCAAACGAAAAGTT
GTCTTCTTCACTGCTCGGGTACATCCTGGTGAAACGCCTGCATCTTTTGT
TTGTCATGGTATTATCAGTTTCCTGATATCTGATCATCCCATTGCTCAGG
TTCTAAGAGACCACATTGTTTTCATGATTGTACCCATGCTGAATCCTGAT
GGTGTTGTTCTTGGTAATTATCGTTGTTCTCTGATGGGTTTTGATTTGAA
TCGATATTGGCATGAACCGTCACCCTGGGCTCACCCATCTATCGTTGCCA
CTAAACAATTATTGCTCGACGCCTGCATCTTTTGTTTGTCATGGTATTAT
CAGTTTCCTGATATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071917-exon-scaffold_65-1491911889:90791..91875 | TCONS_00071917-exon-scaffold_65-1491911889:90791..91875 | Clytia hemisphaerica | exon |
| TCONS_00071917-exon-scaffold_65-1510915933:90791..91875 | TCONS_00071917-exon-scaffold_65-1510915933:90791..91875 | Clytia hemisphaerica | exon |
| TCONS_00071917-exon-scaffold_65-1575043694:90791..91875 | TCONS_00071917-exon-scaffold_65-1575043694:90791..91875 | Clytia hemisphaerica | exon |
| TCONS_00071917-exon-scaffold_65-1491911889:92311..93448 | TCONS_00071917-exon-scaffold_65-1491911889:92311..93448 | Clytia hemisphaerica | exon |
| TCONS_00071917-exon-scaffold_65-1510915933:92311..93448 | TCONS_00071917-exon-scaffold_65-1510915933:92311..93448 | Clytia hemisphaerica | exon |
| TCONS_00071917-exon-scaffold_65-1575043694:92311..93448 | TCONS_00071917-exon-scaffold_65-1575043694:92311..93448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_65 | supercontig | scaffold_65:90791..93448 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000834 | Peptidase_M14 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0004181 | metallocarboxypeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004181 |
metallocarboxypeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00071917 vs. Swiss-Prot (Human)
Match: CBPC6 (Cytosolic carboxypeptidase 6 OS=Homo sapiens GN=AGBL4 PE=2 SV=3) HSP 1 Score: 446.432 bits (1147), Expect = 4.025e-148 Identity = 201/295 (68.14%), Postives = 245/295 (83.05%), Query Frame = 3
Query: 201 NEDLVG-NVSKFIAYPPGSTDKLKTGYLMFHSCFQSGNLGRVDWISDMEYDLFVRPDTCNPRYRVWFNFTVQNVRAGQRVIFNIVNFSKSKSLYREGMAPMVKSTSRPKWQRIPAKNVFYYRSPDHHKNYVMSFAFAFDKENDVYQFAYCYPYTYNKLQKFLGDIEKLDLNYVQRRKLCVSVQQRSVDLLTITAPKNQKENIKRKVVFFTARVHPGETPASFVCHGIISFLISDHPIAQVLRDHIVFMIVPMLNPDGVVLGNYRCSLMGFDLNRYWHEPSPWAHPSIVATKQLLL 1082
N+D +G NVSK+I P G + K G+L+F +CF+SGNLGRVD +S+ EYDLF+RPDTCNPR+RVWFNFTV+NV+ QRVIFNIVNFSK+KSLYR+GMAPMVKSTSRPKWQR+P KNV+YYR PDH KNYVMSFAF FD+E D+YQFAYCYPYTY + Q +L ++K +++Y R +L SVQQR +DLLTIT+P N +E ++KVVF T RVHPGETP+SFVC GII FL+S HPIA VLR+++VF I PMLNPDGV LGNYRCSLMGFDLNR+W +PSPW HP++ KQL++
Sbjct: 17 NDDAIGGNVSKYIVLPTGYCGQPKKGHLIFDACFESGNLGRVDQVSEFEYDLFIRPDTCNPRFRVWFNFTVENVKESQRVIFNIVNFSKTKSLYRDGMAPMVKSTSRPKWQRLPPKNVYYYRCPDHRKNYVMSFAFCFDREEDIYQFAYCYPYTYTRFQHYLDSLQKRNMDYFFREQLGQSVQQRKLDLLTITSPDNLREGAEQKVVFITGRVHPGETPSSFVCQGIIDFLVSQHPIACVLREYLVFKIAPMLNPDGVYLGNYRCSLMGFDLNRHWLDPSPWVHPTLHGVKQLIV 311 HSP 2 Score: 322.783 bits (826), Expect = 1.180e-100 Identity = 147/213 (69.01%), Postives = 178/213 (83.57%), Query Frame = 1
Query: 1084 TPASFVCHGIISFLISDHPIAQVLRDHIVFMIVPMLNPDGVVLGNYRCSLMGFDLNRYWHEPSPWAHPSIVATKQLLLDMNEDPQTSLDFYIDLHAHSTAMNGFMYGNVYEEEERFDQHSVFPRLLCSNAEDFSYSNTSFNRDALKAGTGRRTLGSCLSEHSNCYTLEVSFFCY-INGTSNLVPYTEEGFLKLGNNVARTFMDYYKLSLQVAK 1719
TP+SFVC GII FL+S HPIA VLR+++VF I PMLNPDGV LGNYRCSLMGFDLNR+W +PSPW HP++ KQL++ M DP+TSL+FYID+HAHST MNGFMYGN++E+EERF + ++FP+LLC NAEDFSYS+TSFNRDA+KAGTGRR LG L S CYTLEVSF+ Y I+GT+ VPYTEE ++KLG NVARTF+DYY+L+ V K
Sbjct: 234 TPSSFVCQGIIDFLVSQHPIACVLREYLVFKIAPMLNPDGVYLGNYRCSLMGFDLNRHWLDPSPWVHPTLHGVKQLIVQMYNDPKTSLEFYIDIHAHSTMMNGFMYGNIFEDEERFQRQAIFPKLLCQNAEDFSYSSTSFNRDAVKAGTGRRFLGGLLDHTSYCYTLEVSFYSYIISGTTAAVPYTEEAYMKLGRNVARTFLDYYRLNPVVEK 446
The following BLAST results are available for this feature:
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