TCONS_00071915 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071915
Unique NameTCONS_00071915
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071915 ID=TCONS_00071915|Name=TCONS_00071915|organism=Clytia hemisphaerica|type=transcript|length=237bp
ATTTATAACCATTCGATAGTTTTTTCACCCATTTACAACATCTATTTACA
TCTTTACAACTGAATtaggaaaaaaatcatttaaaaaatggCTTTTCATT
TTGGCAAGCAAGTCTTGAATGTATTCAAAGGCGTTCATTCTTCTCAACCA
CTTCTGAAGCATAATTACCAAATATTCTTGAAGAACAATCTCCGTTTAGC
CAGCTCATCAAGCAAGCTGTTCACTAGTGAACCAACT
Run BLAST on NCBI

transcript from alignment at scaffold_65:77090..77974+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071915 ID=TCONS_00071915|Name=TCONS_00071915|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at scaffold_65:77090..77974+ (Clytia hemisphaerica)
ATTTATAACCATTCGATAGTTTTTTCACCCATTTACAACATCTATTTACA
TCTTTACAACTGAATtaggaaaaaaatcatttaaaaaatggCTTTTCATT
TTGGCAAGCAAGTCTTGAATGTATTCAAAGGTAagcgaatttttcaaatt
ttgcaaaattcaatatttttcaggTGCTATGCTCTCATAATATAATTCAA
TTAAGGTCGCTTACAGTAATATATGTGGAcactttattttcttaaaaatt
tctcAGCACTTATTTATGCTATATCAAAAGGTTTTACACCagtgaaaaga
tattttcaaggAGAATAATATATATACTGTAAGattagatttctgtaaaa
ttgaaaaatgaaaaagaaatatgaaaaatataatttttttgttttgattc
aaagatcatgacatgaaattttcaaaaatatttttaaactgaTTATCTGT
GTTCAGGGCCtttatttcttcttcattttttacaattttacaaaaatatc
ttaGATAATTCTcttcaaaaatatctttccaacagtgTATAtcatatatt
ttttgatatGGCTAGCATAAATATAAATCGGCTAGAGAAATTAGAAatag
agaaattttgaaaaatatttatatactTATGAGACTCGCTTTAATTTGTT
TTTACCAAGATTTACCATGTTTCTCAGTAACAAAAAGTAAAGATATGACC
ATAAAATGTTATAATGCTCAAAATGATAATAGATAAAAACGACCATCACC
CAAAGTACATTTGTTCTCTTTTCCCTAGGCGTTCATTCTTCTCAACCACT
TCTGAAGCATAATTACCAAATATTCTTGAAGAACAATCTCCGTTTAGCCA
GCTCATCAAGCAAGCTGTTCACTAGTGAACCAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044653XLOC_044653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071915-exon-scaffold_65-1491911889:77090..77219TCONS_00071915-exon-scaffold_65-1491911889:77090..77219Clytia hemisphaericaexon
TCONS_00071915-exon-scaffold_65-1510915933:77090..77219TCONS_00071915-exon-scaffold_65-1510915933:77090..77219Clytia hemisphaericaexon
TCONS_00071915-exon-scaffold_65-1575043694:77090..77219TCONS_00071915-exon-scaffold_65-1575043694:77090..77219Clytia hemisphaericaexon
TCONS_00071915-exon-scaffold_65-1491911889:77868..77974TCONS_00071915-exon-scaffold_65-1491911889:77868..77974Clytia hemisphaericaexon
TCONS_00071915-exon-scaffold_65-1510915933:77868..77974TCONS_00071915-exon-scaffold_65-1510915933:77868..77974Clytia hemisphaericaexon
TCONS_00071915-exon-scaffold_65-1575043694:77868..77974TCONS_00071915-exon-scaffold_65-1575043694:77868..77974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_65supercontigscaffold_65:77090..77974 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.1883	69.0372	24.582	20.9128	66.1941	31.1833	31.5534	53.399	18.2952	10.8382	7.65075	19.4885	18.8337	19.5589	30.0162	35.0881	45.3515	47.9364	9.03092	7.35016	20.9912	16.0259	51.9509	49.1988	26.3503	39.798	10.3547	6.90676	29.3358	25.6187
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071915 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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