TCONS_00071913 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071913
Unique NameTCONS_00071913
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071913 ID=TCONS_00071913|Name=TCONS_00071913|organism=Clytia hemisphaerica|type=transcript|length=426bp
TTCTCTTTAAGTCATCAAGTTTTTACAGATTAGAATCTATTATCAAACGC
TTGATAATATCTGGATTGAATCCAGATGTTGGCTTTGTAAAATTTGTATA
GCGTTTTATGGTATTAACGTGtggtaatttcaaaaaattgttctttgtgt
TAGCAATCTGCTTGTATGCTGCAGGTGATTTGTGGTAAATGATCAAGCAC
CACCGTACAATCAAAGGATGCCAACGCATcgaacaactgtttttcaactT
GGACATCTTCTGCTGCTCCTGCCACAGAAGCCATTGAGGAGTCCCTTCTG
GAAACTCTGGCTTTTCTTTATCCAGCACTACTTTGACGATTTCATGATTT
GTTTCATTTAATTCAACGCTTTCATCTTCAATCATCTGGTTGATTTTCGA
CTGCAAACTGACTATTTTTCGAATAG
Run BLAST on NCBI

protein sequence of TCONS_00071913-protein

>TCONS_00071913-protein ID=TCONS_00071913-protein|Name=TCONS_00071913-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
IRKIVSLQSKINQMIEDESVELNETNHEIVKVVLDKEKPEFPEGTPQWLL
WQEQQKMSKLKNSCSMRWHPLIVRWCLIIYHKSPAAYKQIANTKNNFLKL
PHVNTIKRYTNFTKPTSGFNPDIIKRLIIDSNL
Run BLAST on NCBI

transcript from alignment at scaffold_64:347344..347769

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071913 ID=TCONS_00071913|Name=TCONS_00071913|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_64:347344..347769 (Clytia hemisphaerica)
CTATTCGAAAAATAGTCAGTTTGCAGTCGAAAATCAACCAGATGATTGAA
GATGAAAGCGTTGAATTAAATGAAACAAATCATGAAATCGTCAAAGTAGT
GCTGGATAAAGAAAAGCCAGAGTTTCCAGAAGGGACTCCTCAATGGCTTC
TGTGGCAGGAGCAGCAGAAGATGTCCAagttgaaaaacagttgttcgATG
CGTTGGCATCCTTTGATTGTACGGTGGTGCTTGATCATTTACCACAAATC
ACCTGCAGCATACAAGCAGATTGCTAacacaaagaacaattttttgaaat
taccaCACGTTAATACCATAAAACGCTATACAAATTTTACAAAGCCAACA
TCTGGATTCAATCCAGATATTATCAAGCGTTTGATAATAGATTCTAATCT
GTAAAAACTTGATGACTTAAAGAGAA

Coding sequence (CDS) from alignment at scaffold_64:347344..347769

>TCONS_00071913 ID=TCONS_00071913|Name=TCONS_00071913|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_64:347344..347769 (Clytia hemisphaerica)
ATTCGAAAAATAGTCAGTTTGCAGTCGAAAATCAACCAGATGATTGAAGA
TGAAAGCGTTGAATTAAATGAAACAAATCATGAAATCGTCAAAGTAGTGC
TGGATAAAGAAAAGCCAGAGTTTCCAGAAGGGACTCCTCAATGGCTTCTG
TGGCAGGAGCAGCAGAAGATGTCCAagttgaaaaacagttgttcgATGCG
TTGGCATCCTTTGATTGTACGGTGGTGCTTGATCATTTACCACAAATCAC
CTGCAGCATACAAGCAGATTGCTAacacaaagaacaattttttgaaatta
ccaCACGTTAATACCATAAAACGCTATACAAATTTTACAAAGCCAACATC
TGGATTCAATCCAGATATTATCAAGCGTTTGATAATAGATTCTAATCTGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044651XLOC_044651Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071913-proteinTCONS_00071913-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071913-exon-scaffold_64-1491911889:347344..347769TCONS_00071913-exon-scaffold_64-1491911889:347344..347769Clytia hemisphaericaexon
TCONS_00071913-exon-scaffold_64-1510915933:347344..347769TCONS_00071913-exon-scaffold_64-1510915933:347344..347769Clytia hemisphaericaexon
TCONS_00071913-exon-scaffold_64-1575043694:347344..347769TCONS_00071913-exon-scaffold_64-1575043694:347344..347769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:347344..347769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.15943	0.0548619	0	0.707818	0.603826	0.420389	0.568149	1.2612	0.504979	0	0.689624	0.378227	0.369457	0.102076	1.0535	0.655421	0.365649	0.289298	0.541722	0.758552	1.82286	0.299681	0	0.351068	0.682487	1.28819	0	0.684727	0.928069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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