TCONS_00071911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071911
Unique NameTCONS_00071911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071911 ID=TCONS_00071911|Name=TCONS_00071911|organism=Clytia hemisphaerica|type=transcript|length=673bp
CAATTCTTTCAAGTTGATTTGGGAGCTGTgtactttttctttgaatttat
cATCAAAGCCTCCTCTTTTGATTGTTCTTGTATCTTATCTCAGGACCAAA
AATATTAGTAATTAAGCTTACATCAAAAAAATGGAGGGGAGGACTTATGA
ACAATGTAAAAATGAGTACAAACGTAGTAACGGTAGTACAGTgtaaaaat
gaatttatttcctttttcaGGAAACGTTCAACGATGCTGTGATGCCATAT
CTGAAAAGACCTCAATAATTCCAAGATACCCTTGATCGATTCAACTATTC
AAAGTAAGGAGATTCTCTGGTGCAACAAAACTACAGAGCTGAACGATTTA
AATTTCGCCGCAAATCTTATGATTGACGAAACTGCTATCAAACCTGTTGT
CCAATACCATGCCCCGAACACCTCTATTTATGGATTTTCAGCCATGCCAA
GATTTGTCATTGGGAGAAATGTTTGTCAAAATTTGGATATAAAGGCATCC
TTAATCGGGCTTAACATACAGAAAGACACCAAGTCAAATAAAGAGATATA
TGGCATCACTGAGATCACCTTTGGAAACTCAAACTACTTCATTGCATACG
CACAGTTCAAAACTTATACCGACTGGAAAAAGGCCCTTGACATGGGAGAT
TATATCAATCGAGGCAATCCCAT
Run BLAST on NCBI

protein sequence of TCONS_00071911-protein

>TCONS_00071911-protein ID=TCONS_00071911-protein|Name=TCONS_00071911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MIDETAIKPVVQYHAPNTSIYGFSAMPRFVIGRNVCQNLDIKASLIGLNI
QKDTKSNKEIYGITEITFGNSNYFIAYAQFKTYTDWKKALDMGDYINRGN
P
Run BLAST on NCBI

transcript from alignment at scaffold_64:328296..328968

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071911 ID=TCONS_00071911|Name=TCONS_00071911|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_64:328296..328968 (Clytia hemisphaerica)
ATGGGATTGCCTCGATTGATATAATCTCCCATGTCAAGGGCCTTTTTCCA
GTCGGTATAAGTTTTGAACTGTGCGTATGCAATGAAGTAGTTTGAGTTTC
CAAAGGTGATCTCAGTGATGCCATATATCTCTTTATTTGACTTGGTGTCT
TTCTGTATGTTAAGCCCGATTAAGGATGCCTTTATATCCAAATTTTGACA
AACATTTCTCCCAATGACAAATCTTGGCATGGCTGAAAATCCATAAATAG
AGGTGTTCGGGGCATGGTATTGGACAACAGGTTTGATAGCAGTTTCGTCA
ATCATAAGATTTGCGGCGAAATTTAAATCGTTCAGCTCTGTAGTTTTGTT
GCACCAGAGAATCTCCTTACTTTGAATAGTTGAATCGATCAAGGGTATCT
TGGAATTATTGAGGTCTTTTCAGATATGGCATCACAGCATCGTTGAACGT
TTCCtgaaaaaggaaataaattcatttttacACTGTACTACCGTTACTAC
GTTTGTACTCATTTTTACATTGTTCATAAGTCCTCCCCTCCATTTTTTTG
ATGTAAGCTTAATTACTAATATTTTTGGTCCTGAGATAAGATACAAGAAC
AATCAAAAGAGGAGGCTTTGATgataaattcaaagaaaaagtacACAGCT
CCCAAATCAACTTGAAAGAATTG

Coding sequence (CDS) from alignment at scaffold_64:328296..328968

>TCONS_00071911 ID=TCONS_00071911|Name=TCONS_00071911|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_64:328296..328968 (Clytia hemisphaerica)
GGGATTGCCTCGATTGATATAATCTCCCATGTCAAGGGCCTTTTTCCAGT
CGGTATAAGTTTTGAACTGTGCGTATGCAATGAAGTAGTTTGAGTTTCCA
AAGGTGATCTCAGTGATGCCATATATCTCTTTATTTGACTTGGTGTCTTT
CTGTATGTTAAGCCCGATTAAGGATGCCTTTATATCCAAATTTTGACAAA
CATTTCTCCCAATGACAAATCTTGGCATGGCTGAAAATCCATAAATAGAG
GTGTTCGGGGCATGGTATTGGACAACAGGTTTGATAGCAGTTTCGTCAAT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044649XLOC_044649Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071911-proteinTCONS_00071911-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071911-exon-scaffold_64-1491911889:328296..328968TCONS_00071911-exon-scaffold_64-1491911889:328296..328968Clytia hemisphaericaexon
TCONS_00071911-exon-scaffold_64-1510915933:328296..328968TCONS_00071911-exon-scaffold_64-1510915933:328296..328968Clytia hemisphaericaexon
TCONS_00071911-exon-scaffold_64-1575043694:328296..328968TCONS_00071911-exon-scaffold_64-1575043694:328296..328968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:328296..328968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0764607	0.0745612	0	0.0846978	0.618669	0.16296	0.0983022	0.460147	0.128864	0	0	0.0509224	0.0508516	0.10562	0	0.0931859	0.286994	0.0588318	0.406397	0.170106	0	0.216353	0.0876683	0	0.0820924	0.146531	0	0.223782	0.0848654	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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