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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071910 ID=TCONS_00071910|Name=TCONS_00071910|organism=Clytia hemisphaerica|type=transcript|length=3570bp
CGGGTACCTTTGCATTTTGTCAGAGAGTCATGTATATAACGAGAGGAACA
ATAAAAACGCAAAATGTAGAAATGTTTCAAGGAGCAAACATAGAAAAAGT
CGTGCTCATGACTCAACAGTGGATGCGAAATAAGCAAGGCATACGTTGTA
ACCAGGCAGGGGGTTTACATTAATGAGTATTATTTTAGGCATTTCATCCA
AAGCAAAAATCCCTGTCCTGAACATGTTCAGCGATGTATACAGAAATGTT
TTCAGCgaccaaatatcaaaaaataacaatgaaaatgctAAAAGAAGGGA
AAGAGGAAGACTTTATTTAAAAATTGTAATGGAATCCATTCAATATTTGA
CTCGACAAGGATTAGCACTTAGAGGAAATAAAGATGGAACGATAATCTGA
CCCAGCTGTTATACTTACGAAGAATAGATCAACCATGGATCAAAGAGCGA
CTAGGTACAGATAAAACCCCCAGGAGTTAAGAAATATACACACCACGACT
ATCAAGGGGAGATCACAGGTATCATGGGAAAGCAATTACTGAGACGAAAA
TTGTATGACATTAATAAcactaaaatttcttttagGTAGCTGAATCGGAT
GCTGGTTTATCAAAACCAAACGAACGAATATCAAAATGATTTCTGCTATC
AGTTCCGTTCTAACGGCATACGTTATACAATCTTTCATCGCGCACGGTGA
GGATGATACTCCTCCCATGAGCTCTTGTAGTGAAAACCTGAACATAGCAA
GCTCGTTTATATTCTTCTATTTACAGAGCTAactgaaaaatgagaaacaa
aaataacaaaaacaaagtgGCATTGGTGCGTTCATGTGAGATGCGGAAAA
ACCATCAAGGGACTGGGGTTTCAATAATCCGGCGAAGACAAAGCCCTCCA
AGTACTCCAAGAGAAACATAGAGAGACACGCAAAAACGAAAATAGGAGAT
TTGACCTCGCGACGTAAGAACGCTTTTATTGTTTTCACCCGAGTGTAACC
ATCGATTTCGTTTCCAGATTCTATTTCGCTCGCCCCAGGCTCAATAGGTG
AAAAAGGTCAAATAAATTGACCTCTTTCCTCGTGCGTGGTCCTTCTTTAT
TGCTTTGCGGTTTTGTTGTCACACCATCTCAAGGTATTAACCCTTCAAAT
TACATTTAAGTTACTTTAATAAGTATAGATCAACCATGGATCAAAGAGCG
ACTAGGTACAGATAAACCCCCAGGAGTTAAGAAATATACACACCACGACT
ATCAAGAGGAGATCACAGGTATCATGGGAAAGCAATTACTGAGACGAAAA
TTGTATGACATTAATAACAGTAAAATTTCTTTAAGGTAGCTGAATCGGAT
GCTGGTTTATCAAAACCAAAAGAACGAATATCAAAATGATTTCTGATAAT
CAGTTTCGTTCTAACGGCATACGTTATACAATCTTTCATCGCGCACGGTG
AGGATGATACTCCTCCCATGAGCTCTTGTAGTGAAAACCTGAACATAGCA
AGCTCGTTTATATTCTTCTATTTACAGAGCTAACTGAAAAATGAGAAACA
AAAATAACAAAAACAAAGTGGCATTGGTGCGTTCATGTGAGATGCGGAAA
AACCATCAAGGGACTGGGGTTTCAATAATCCGGCGAAGACAAAGCCCTCC
AAGTACTCCAAGAGAAACATAGAGAGACACGCAAAAACGAAAATAGGAGA
TTTGACCTCGCGACGTAAGAACGCTTTTATTGTTTTCACCCGAGTGTAAC
CATCGATTTCGTTTCCAGATTCTATTTCGCTCGCCCCAGGCTCAATAGGT
GAAAAAGGTCAAATAAATTGACCTCTTTCCTCGTGCGTGGTCCTTCTTTA
TTGCTTTGCGGTTTTGTTGTCACACCATCTCAAGGTATTAACCCTTCAAA
TTACATTTAAGTTACTTTAATAAGTATAGATCAACCATGGATCAAAGAGC
GACTAGGTACAGATAAACCCCCAGGAGTTAAGAAATATACACACCACGAC
TATCAAGAGGAGATCACAGGTATCATGGGAAAGCAATTACTGAGACGAAA
ATTGTATGACATTAATAACAGTAAAATTTCTTTAAGGTAGCTGAATCGGA
TGCTGGTTTATCAAAACCAAAAGAACGAATATCAAAATGATTTCTGATAA
TCAGTTTCGTTCTAACGGCATACGTTATACAATCTTTCATCGCGCACGGT
GAGGATGATACTCCTCCCATGAGCTCTTGTAGTGAAAACCTGAACATAGC
AAGCTCGTTTATATTCTTCTATTTACAGAGCTAACTGAAAAATGAGAAAC
AAAAATAACAAAAACAAAGTGGCATTGGTGCGTTCATGTGAGATGCGGAA
AAACCATCAAGGGACTGGGGTTTCAATAATCCGGCGAAGACAAAGCCCTC
CAAGTACTCCAAGAGAAACATAGAGAGACACGCAAAAACGAAAATAGGAG
ATTTGACCTCGCGACGTAAGAACGCTTTTATTGTTTTCACCCGAGTGTAA
CCATCGATTTCGTTTCCAGATTCTATTTCGCTCGCCCCAGGCTCAATAGG
TGAAAAAGGTCAAATAAATTGACCTCTTTCCTCGTGCGTGGTCCTTCTTT
ATTGCTTTGCGGTTTTGTTGTCACACCATCTCAAGGTATTAACCCTTCAA
ATTACATTTAAGTTACTTTAATAAGTATAGATCAACCATGGATCAAAGAG
CGACTAGGTACAGATAAACCCCCAGGAGTTAAGAAATATACACACCACGA
CTATCAAGAGGAGATCACAGGTATCATGGGAAAGCAATTACTGAGACGAA
AATTGTATGACATTAATAACAGTAAAATTTCTTTAAGGTAGCTGAATCGG
ATGCTGGTTTATCAAAACCAAAAGAACGAATATCAAAATGATTTCTGATA
ATCAGTTTCGTTCTAACGGCATACGTTATACAATCTTTCATCGCGCACGG
TGAGGATGATACTCCTCCCATGAGCTCTTGTAGTGAAAACCTGAACATAG
CAAGCTCGTTTATATTCTTCTATTTACAGAGCTAACTGAAAAATGAGAAA
CAAAAATAACAAAAACAAAGTGGCATTGGTGCGTTCATGTGAGATGCGGA
AAAACCATCAAGGGACTGGGGTTTCAATAATCCGGCGAAGACAAAGCCCT
CCAAGTACTCCAAGAGAAACATAGAGAGGCACGCAAAAACGAAAATAGGA
GATTTGACCTCGCGACGTAAGAACGCTGGAGGAAGACGGGCAATTTTGAG
AACAGTCAAAACATTGAGAATAGCTGAAGGAGCAAACTTCACCTATGGAA
GGATCAAAGTCATCGCTGGGGTTACGCATCTTTTAAACCGAGCCGTCAGA
AGGGTGCTGAACCAAGGTGGTTTCCGTTTTTTGCAAGTTCGTCGCAGGGG
CTTGTCAAAACTGAGGTTTTGTAAAACAATCCGAAAGAAAAATCTTCGGC
TGGAGTTTTGGAGGCGTGGAATATCATTCTACCTGGACGCAAAAagattt
caattcaaaacaaacccAATGTGGGGAAGGGGGGACTCAGTGAGAACATC
AGTTCTGACCACGATTGTAG Run BLAST on NCBI transcript from alignment at scaffold_64:321420..324989 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071910 ID=TCONS_00071910|Name=TCONS_00071910|organism=Clytia hemisphaerica|type=transcript|length=3570bp|location=Sequence derived from alignment at scaffold_64:321420..324989 (Clytia hemisphaerica)
CTACAATCGTGGTCAGAACTGATGTTCTCACTGAGTCCCCCCTTCCCCAC
ATTgggtttgttttgaattgaaatctTTTTGCGTCCAGGTAGAATGATAT
TCCACGCCTCCAAAACTCCAGCCGAAGATTTTTCTTTCGGATTGTTTTAC
AAAACCTCAGTTTTGACAAGCCCCTGCGACGAACTTGCAAAAAACGGAAA
CCACCTTGGTTCAGCACCCTTCTGACGGCTCGGTTTAAAAGATGCGTAAC
CCCAGCGATGACTTTGATCCTTCCATAGGTGAAGTTTGCTCCTTCAGCTA
TTCTCAATGTTTTGACTGTTCTCAAAATTGCCCGTCTTCCTCCAGCGTTC
TTACGTCGCGAGGTCAAATCTCCTATTTTCGTTTTTGCGTGCCTCTCTAT
GTTTCTCTTGGAGTACTTGGAGGGCTTTGTCTTCGCCGGATTATTGAAAC
CCCAGTCCCTTGATGGTTTTTCCGCATCTCACATGAACGCACCAATGCCA
CTTTGTTTTTGTTATTTTTGTTTCTCATTTTTCAGTTAGCTCTGTAAATA
GAAGAATATAAACGAGCTTGCTATGTTCAGGTTTTCACTACAAGAGCTCA
TGGGAGGAGTATCATCCTCACCGTGCGCGATGAAAGATTGTATAACGTAT
GCCGTTAGAACGAAACTGATTATCAGAAATCATTTTGATATTCGTTCTTT
TGGTTTTGATAAACCAGCATCCGATTCAGCTACCTTAAAGAAATTTTACT
GTTATTAATGTCATACAATTTTCGTCTCAGTAATTGCTTTCCCATGATAC
CTGTGATCTCCTCTTGATAGTCGTGGTGTGTATATTTCTTAACTCCTGGG
GGTTTATCTGTACCTAGTCGCTCTTTGATCCATGGTTGATCTATACTTAT
TAAAGTAACTTAAATGTAATTTGAAGGGTTAATACCTTGAGATGGTGTGA
CAACAAAACCGCAAAGCAATAAAGAAGGACCACGCACGAGGAAAGAGGTC
AATTTATTTGACCTTTTTCACCTATTGAGCCTGGGGCGAGCGAAATAGAA
TCTGGAAACGAAATCGATGGTTACACTCGGGTGAAAACAATAAAAGCGTT
CTTACGTCGCGAGGTCAAATCTCCTATTTTCGTTTTTGCGTGTCTCTCTA
TGTTTCTCTTGGAGTACTTGGAGGGCTTTGTCTTCGCCGGATTATTGAAA
CCCCAGTCCCTTGATGGTTTTTCCGCATCTCACATGAACGCACCAATGCC
ACTTTGTTTTTGTTATTTTTGTTTCTCATTTTTCAGTTAGCTCTGTAAAT
AGAAGAATATAAACGAGCTTGCTATGTTCAGGTTTTCACTACAAGAGCTC
ATGGGAGGAGTATCATCCTCACCGTGCGCGATGAAAGATTGTATAACGTA
TGCCGTTAGAACGAAACTGATTATCAGAAATCATTTTGATATTCGTTCTT
TTGGTTTTGATAAACCAGCATCCGATTCAGCTACCTTAAAGAAATTTTAC
TGTTATTAATGTCATACAATTTTCGTCTCAGTAATTGCTTTCCCATGATA
CCTGTGATCTCCTCTTGATAGTCGTGGTGTGTATATTTCTTAACTCCTGG
GGGTTTATCTGTACCTAGTCGCTCTTTGATCCATGGTTGATCTATACTTA
TTAAAGTAACTTAAATGTAATTTGAAGGGTTAATACCTTGAGATGGTGTG
ACAACAAAACCGCAAAGCAATAAAGAAGGACCACGCACGAGGAAAGAGGT
CAATTTATTTGACCTTTTTCACCTATTGAGCCTGGGGCGAGCGAAATAGA
ATCTGGAAACGAAATCGATGGTTACACTCGGGTGAAAACAATAAAAGCGT
TCTTACGTCGCGAGGTCAAATCTCCTATTTTCGTTTTTGCGTGTCTCTCT
ATGTTTCTCTTGGAGTACTTGGAGGGCTTTGTCTTCGCCGGATTATTGAA
ACCCCAGTCCCTTGATGGTTTTTCCGCATCTCACATGAACGCACCAATGC
CACTTTGTTTTTGTTATTTTTGTTTCTCATTTTTCAGTTAGCTCTGTAAA
TAGAAGAATATAAACGAGCTTGCTATGTTCAGGTTTTCACTACAAGAGCT
CATGGGAGGAGTATCATCCTCACCGTGCGCGATGAAAGATTGTATAACGT
ATGCCGTTAGAACGAAACTGATTATCAGAAATCATTTTGATATTCGTTCT
TTTGGTTTTGATAAACCAGCATCCGATTCAGCTACCTTAAAGAAATTTTA
CTGTTATTAATGTCATACAATTTTCGTCTCAGTAATTGCTTTCCCATGAT
ACCTGTGATCTCCTCTTGATAGTCGTGGTGTGTATATTTCTTAACTCCTG
GGGGTTTATCTGTACCTAGTCGCTCTTTGATCCATGGTTGATCTATACTT
ATTAAAGTAACTTAAATGTAATTTGAAGGGTTAATACCTTGAGATGGTGT
GACAACAAAACCGCAAAGCAATAAAGAAGGACCACGCACGAGGAAAGAGG
TCAATTTATTTGACCTTTTTCACCTATTGAGCCTGGGGCGAGCGAAATAG
AATCTGGAAACGAAATCGATGGTTACACTCGGGTGAAAACAATAAAAGCG
TTCTTACGTCGCGAGGTCAAATCTCCTATTTTCGTTTTTGCGTGTCTCTC
TATGTTTCTCTTGGAGTACTTGGAGGGCTTTGTCTTCGCCGGATTATTGA
AACCCCAGTCCCTTGATGGTTTTTCCGCATCTCACATGAACGCACCAATG
CcactttgtttttgttatttttgtttctcatttttcagtTAGCTCTGTAA
ATAGAAGAATATAAACGAGCTTGCTATGTTCAGGTTTTCACTACAAGAGC
TCATGGGAGGAGTATCATCCTCACCGTGCGCGATGAAAGATTGTATAACG
TATGCCGTTAGAACGGAACTGATAGCAGAAATCATTTTGATATTCGTTCG
TTTGGTTTTGATAAACCAGCATCCGATTCAGCTACctaaaagaaatttta
gtgTTATTAATGTCATACAATTTTCGTCTCAGTAATTGCTTTCCCATGAT
ACCTGTGATCTCCCCTTGATAGTCGTGGTGTGTATATTTCTTAACTCCTG
GGGGTTTTATCTGTACCTAGTCGCTCTTTGATCCATGGTTGATCTATTCT
TCGTAAGTATAACAGCTGGGTCAGATTATCGTTCCATCTTTATTTCCTCT
AAGTGCTAATCCTTGTCGAGTCAAATATTGAATGGATTCCATTACAATTT
TTAAATAAAGTCTTCCTCTTTCCCTTCTTTTagcattttcattgttattt
tttgatatttggtcGCTGAAAACATTTCTGTATACATCGCTGAACATGTT
CAGGACAGGGATTTTTGCTTTGGATGAAATGCCTAAAATAATACTCATTA
ATGTAAACCCCCTGCCTGGTTACAACGTATGCCTTGCTTATTTCGCATCC
ACTGTTGAGTCATGAGCACGACTTTTTCTATGTTTGCTCCTTGAAACATT
TCTACATTTTGCGTTTTTATTGTTCCTCTCGTTATATACATGACTCTCTG
ACAAAATGCAAAGGTACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071910-exon-scaffold_64-1491911889:321420..324989 | TCONS_00071910-exon-scaffold_64-1491911889:321420..324989 | Clytia hemisphaerica | exon |
| TCONS_00071910-exon-scaffold_64-1510915933:321420..324989 | TCONS_00071910-exon-scaffold_64-1510915933:321420..324989 | Clytia hemisphaerica | exon |
| TCONS_00071910-exon-scaffold_64-1575043694:321420..324989 | TCONS_00071910-exon-scaffold_64-1575043694:321420..324989 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:321420..324989 . |
Blast
The following BLAST results are available for this feature:
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