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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071909 ID=TCONS_00071909|Name=TCONS_00071909|organism=Clytia hemisphaerica|type=transcript|length=1163bp
CAACATTAGATGaccttctaaagaaaaaatagTTCTTCGGCAATGAGACT
TTGGAAACCATTGAAAAGAGGGTTCTGTCCCACATGGCAGATAGGAAATG
TTTCCTTTAAAAGCTTGCACACCATTCTAACCGAGATTGAGGCAGTGTTG
AATTGTAAACCCTTAATGTACGTTGGTGCGGATGACGAGAATGCTTTGAC
ACCACACTTGATTTGTGGAAAGAGTATCATCAGCCTGCCTGTCGAGAATG
TCGTCAAGTCGCTAGAAGACTCTTATCAACACgttcaaaaatgtttcaaa
gaTGCACGAGAAAGATGGTACCGTGAATATCTAACAGAGATGAGAGTTCA
CAacaagaaaattaagaaatacGAAACGCCAAAAGTCGGTTCACTGGTCT
TGGTTAAATCAAACATTAGATTTGTATATGGATCTCAAACAGTTGGAAGA
GCTGGTCTGAGTGAATTTTGTAACATCTTGAATATTCCCCAACCTGTTTG
GCCAACGCCTTATAATAATATACAAGAGAAACTTTCTGAAGTGTCAGTGG
AGCACGCCAACCAATCGATGAAGGAGGCTGGACAGCGCCTTTTTTCATAC
ATGCTCGAGAAAGAACCTGATAATGCCAGAATTAATGAAGATGGATCAAA
TAGTTGCTTTTCGAGACTGGCGAGGTCTTAGACTATGAATTAAAAACCCT
TTTCTGTCATCAGTGTGTGTACCAAACATAAAGAAAAACTAAATGATAAT
GAATTTCATAAATGGTATGAGCGTCATGAGAAGTGTTGTTTCAACAACCA
TCAAGGCTCGTCGGACCTGATGGAAACTCAAGGCGCAATTGAGATTTTTT
TGCGGTCTGTCGAAAAACATTCCATGAGATATACAACTTTTGTTGGCGAT
GGTGATAGTTCGGGCTTTGGAAATGTTGCTCAAGCTTGTCGTGATGCAGA
CCCACCAAGGAGGAGTATGTGTTGGGCATGTACAGAAAAGGATGGACTAT
AAAAAGAAGATAAGGGGACAAAAATTATCAGATGGGAAAGGTGTCGGAGG
TGGTGGTCGATTAACAGATAAGGTCATTGATAAAATACAGAATTTTTATG
GTCAGTGCATTAGAAACAATGTTGGGAATAAGGAGGGAATGAAGGACAGT
GTTTGGGCTATTT Run BLAST on NCBI protein sequence of TCONS_00071909-protein >TCONS_00071909-protein ID=TCONS_00071909-protein|Name=TCONS_00071909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MRLWKPLKRGFCPTWQIGNVSFKSLHTILTEIEAVLNCKPLMYVGADDEN
ALTPHLICGKSIISLPVENVVKSLEDSYQHVQKCFKDARERWYREYLTEM
RVHNKKIKKYETPKVGSLVLVKSNIRFVYGSQTVGRAGLSEFCNILNIPQ
PVWPTPYNNIQEKLSEVSVEHANQSMKEAGQRLFSYMLEKEPDNARINED
GSNSCFSRLARS Run BLAST on NCBI transcript from alignment at scaffold_64:317550..318712 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071909 ID=TCONS_00071909|Name=TCONS_00071909|organism=Clytia hemisphaerica|type=transcript|length=1163bp|location=Sequence derived from alignment at scaffold_64:317550..318712 (Clytia hemisphaerica)
AAATAGCCCAAACACTGTCCTTCATTCCCTCCTTATTCCCAACATTGTTT
CTAATGCACTGACCATAAAAATTCTGTATTTTATCAATGACCTTATCTGT
TAATCGACCACCACCTCCGACACCTTTCCCATCTGATAATTTTTGTCCCC
TTATCTTCTTTTTATAGTCCATCCTTTTCTGTACATGCCCAACACATACT
CCTCCTTGGTGGGTCTGCATCACGACAAGCTTGAGCAACATTTCCAAAGC
CCGAACTATCACCATCGCCAACAAAAGTTGTATATCTCATGGAATGTTTT
TCGACAGACCGCAAAAAAATCTCAATTGCGCCTTGAGTTTCCATCAGGTC
CGACGAGCCTTGATGGTTGTTGAAACAACACTTCTCATGACGCTCATACC
ATTTATGAAATTCATTATCATTTAGTTTTTCTTTATGTTTGGTACACACA
CTGATGACAGAAAAGGGTTTTTAATTCATAGTCTAAGACCTCGCCAGTCT
CGAAAAGCAACTATTTGATCCATCTTCATTAATTCTGGCATTATCAGGTT
CTTTCTCGAGCATGTATGAAAAAAGGCGCTGTCCAGCCTCCTTCATCGAT
TGGTTGGCGTGCTCCACTGACACTTCAGAAAGTTTCTCTTGTATATTATT
ATAAGGCGTTGGCCAAACAGGTTGGGGAATATTCAAGATGTTACAAAATT
CACTCAGACCAGCTCTTCCAACTGTTTGAGATCCATATACAAATCTAATG
TTTGATTTAACCAAGACCAGTGAACCGACTTTTGGCGTTTCgtatttctt
aattttcttgtTGTGAACTCTCATCTCTGTTAGATATTCACGGTACCATC
TTTCTCGTGCAtctttgaaacatttttgaacGTGTTGATAAGAGTCTTCT
AGCGACTTGACGACATTCTCGACAGGCAGGCTGATGATACTCTTTCCACA
AATCAAGTGTGGTGTCAAAGCATTCTCGTCATCCGCACCAACGTACATTA
AGGGTTTACAATTCAACACTGCCTCAATCTCGGTTAGAATGGTGTGCAAG
CTTTTAAAGGAAACATTTCCTATCTGCCATGTGGGACAGAACCCTCTTTT
CAATGGTTTCCAAAGTCTCATTGCCGAAGAActattttttctttagaagg
tCATCTAATGTTG Coding sequence (CDS) from alignment at scaffold_64:317550..318712 >TCONS_00071909 ID=TCONS_00071909|Name=TCONS_00071909|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_64:317550..318712 (Clytia hemisphaerica)
CTAAGACCTCGCCAGTCTCGAAAAGCAACTATTTGATCCATCTTCATTAA
TTCTGGCATTATCAGGTTCTTTCTCGAGCATGTATGAAAAAAGGCGCTGT
CCAGCCTCCTTCATCGATTGGTTGGCGTGCTCCACTGACACTTCAGAAAG
TTTCTCTTGTATATTATTATAAGGCGTTGGCCAAACAGGTTGGGGAATAT
TCAAGATGTTACAAAATTCACTCAGACCAGCTCTTCCAACTGTTTGAGAT
CCATATACAAATCTAATGTTTGATTTAACCAAGACCAGTGAACCGACTTT
TGGCGTTTCgtatttcttaattttcttgtTGTGAACTCTCATCTCTGTTA
GATATTCACGGTACCATCTTTCTCGTGCAtctttgaaacatttttgaacG
TGTTGATAAGAGTCTTCTAGCGACTTGACGACATTCTCGACAGGCAGGCT
GATGATACTCTTTCCACAAATCAAGTGTGGTGTCAAAGCATTCTCGTCAT
CCGCACCAACGTACATTAAGGGTTTACAATTCAACACTGCCTCAATCTCG
GTTAGAATGGTGTGCAAGCTTTTAAAGGAAACATTTCCTATCTGCCATGT
GGGACAGAACCCTCTTTTCAATGGTTTCCAAAGTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071909-exon-scaffold_64-1491911889:317550..318712 | TCONS_00071909-exon-scaffold_64-1491911889:317550..318712 | Clytia hemisphaerica | exon |
| TCONS_00071909-exon-scaffold_64-1510915933:317550..318712 | TCONS_00071909-exon-scaffold_64-1510915933:317550..318712 | Clytia hemisphaerica | exon |
| TCONS_00071909-exon-scaffold_64-1575043694:317550..318712 | TCONS_00071909-exon-scaffold_64-1575043694:317550..318712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:317550..318712 . |
Blast
The following BLAST results are available for this feature:
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