TCONS_00071908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071908
Unique NameTCONS_00071908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071908 ID=TCONS_00071908|Name=TCONS_00071908|organism=Clytia hemisphaerica|type=transcript|length=363bp
TCCACAACAAAAATGGACGATATAACAACCCAGAAAATGGAAAAGAAGTG
CCGATTCAACCAGGAGGCACCGTCTTCACGACGCATGGTTTTAATTTACC
CGAAAATGCGGCTACTTCGGATAATCTGGTCCTTTACCAAGGCAATGCAA
ATCCAGAGAGACACGCCAAAGATTGGATTCGGAAAAGACATGGAATTCCT
TGTAACAAGGCTGGTGGCTTCTTGGGGGAGTACAACTTCCGCTTTCTGTA
CGAGAATGACCAAGATGAGATTAGGGAAAGGTTCATCGCTGCCTCAAGTA
GACATTACCAAGGCGAATTTTTATAAGATTGAACGTCAGTTTAGTATTTA
TCGACTAATACTA
Run BLAST on NCBI

protein sequence of TCONS_00071908-protein

>TCONS_00071908-protein ID=TCONS_00071908-protein|Name=TCONS_00071908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
HNKNGRYNNPENGKEVPIQPGGTVFTTHGFNLPENAATSDNLVLYQGNAN
PERHAKDWIRKRHGIPCNKAGGFLGEYNFRFLYENDQDEIRERFIAASSR
HYQGEFL
Run BLAST on NCBI

transcript from alignment at scaffold_64:312287..312649

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071908 ID=TCONS_00071908|Name=TCONS_00071908|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_64:312287..312649 (Clytia hemisphaerica)
TAGTATTAGTCGATAAATACTAAACTGACGTTCAATCTTATAAAAATTCG
CCTTGGTAATGTCTACTTGAGGCAGCGATGAACCTTTCCCTAATCTCATC
TTGGTCATTCTCGTACAGAAAGCGGAAGTTGTACTCCCCCAAGAAGCCAC
CAGCCTTGTTACAAGGAATTCCATGTCTTTTCCGAATCCAATCTTTGGCG
TGTCTCTCTGGATTTGCATTGCCTTGGTAAAGGACCAGATTATCCGAAGT
AGCCGCATTTTCGGGTAAATTAAAACCATGCGTCGTGAAGACGGTGCCTC
CTGGTTGAATCGGCACTTCTTTTCCATTTTCTGGGTTGTTATATCGTCCA
TTTTTGTTGTGGA

Coding sequence (CDS) from alignment at scaffold_64:312287..312649

>TCONS_00071908 ID=TCONS_00071908|Name=TCONS_00071908|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_64:312287..312649 (Clytia hemisphaerica)
TTATAAAAATTCGCCTTGGTAATGTCTACTTGAGGCAGCGATGAACCTTT
CCCTAATCTCATCTTGGTCATTCTCGTACAGAAAGCGGAAGTTGTACTCC
CCCAAGAAGCCACCAGCCTTGTTACAAGGAATTCCATGTCTTTTCCGAAT
CCAATCTTTGGCGTGTCTCTCTGGATTTGCATTGCCTTGGTAAAGGACCA
GATTATCCGAAGTAGCCGCATTTTCGGGTAAATTAAAACCATGCGTCGTG
AAGACGGTGCCTCCTGGTTGAATCGGCACTTCTTTTCCATTTTCTGGGTT
GTTATATCGTCCATTTTTGTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044646XLOC_044646Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071908-proteinTCONS_00071908-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071908-exon-scaffold_64-1491911889:312287..312649TCONS_00071908-exon-scaffold_64-1491911889:312287..312649Clytia hemisphaericaexon
TCONS_00071908-exon-scaffold_64-1510915933:312287..312649TCONS_00071908-exon-scaffold_64-1510915933:312287..312649Clytia hemisphaericaexon
TCONS_00071908-exon-scaffold_64-1575043694:312287..312649TCONS_00071908-exon-scaffold_64-1575043694:312287..312649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:312287..312649 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.93202	0.245498	0.592367	1.38642	0	0	0	0	0.153215	0	0.822444	0.280768	0.268718	0.252095	0.489787	0	0.177724	0	0	0	0.494687	0.220748	0.31589	0.674252	0.767095	1.69917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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