TCONS_00071907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071907
Unique NameTCONS_00071907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071907 ID=TCONS_00071907|Name=TCONS_00071907|organism=Clytia hemisphaerica|type=transcript|length=607bp
GCCGtttttataatgttcttaaaaaattgatGTGTACAAAACAGCTTGTT
TCAGCTACCTATCACTTAAACAATATGCATTGGAAGTCCATTGATTGTTT
TCCCCATTTGAAAAATTGTCACCAATTACCTAGTGATGCTAACGCTATTT
TGCACCAACGTGTAAAGCGTCAATTTAAGTTGTCAAGACAGAATTTCAGA
CTGGTGGATGTTGACGACATTGATGAAATAATCGAAGAATCTACCATCGA
AGAACTAAAACTTGTTTGCATGAGAGTAAACGAGGAAAGAGAGGAACTTG
CTGAGCAAGAGAAGCAAGAGGAGGATGAAAAGGAGGAAATGCGTCATCTT
TTTCTTGAAATCGCCATGGTAGATAAAAATCAGAGTGACTCAGCAACAAC
CCTCGGTGCTGGAACTGAAATGCTGAAGTGATTAAAGTCGTAGAAAGATT
TAAACTAGTTCGAGATTGCATTAGTTAGGTATGAAATTAATGTACGATTT
TCAACActaaagtgattaacatcgtaaGAAATCGAAAATCTTTCACTTGC
TTCACAGtacgattttcaacactgaagtgattaacatcgtagaaaaatga
aaaatta
Run BLAST on NCBI

protein sequence of TCONS_00071907-protein

>TCONS_00071907-protein ID=TCONS_00071907-protein|Name=TCONS_00071907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
RFYNVLKKLMCTKQLVSATYHLNNMHWKSIDCFPHLKNCHQLPSDANAIL
HQRVKRQFKLSRQNFRLVDVDDIDEIIEESTIEELKLVCMRVNEEREELA
EQEKQEEDEKEEMRHLFLEIAMVDKNQSDSATTLGAGTEMLK
Run BLAST on NCBI

transcript from alignment at scaffold_64:311313..311919

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071907 ID=TCONS_00071907|Name=TCONS_00071907|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_64:311313..311919 (Clytia hemisphaerica)
taatttttcatttttctacgatgttaatcacttcagtgttgaaaatcgta
CTGTGAAGCAAGTGAAAGATTTTCGATTTCttacgatgttaatcacttta
gTGTTGAAAATCGTACATTAATTTCATACCTAACTAATGCAATCTCGAAC
TAGTTTAAATCTTTCTACGACTTTAATCACTTCAGCATTTCAGTTCCAGC
ACCGAGGGTTGTTGCTGAGTCACTCTGATTTTTATCTACCATGGCGATTT
CAAGAAAAAGATGACGCATTTCCTCCTTTTCATCCTCCTCTTGCTTCTCT
TGCTCAGCAAGTTCCTCTCTTTCCTCGTTTACTCTCATGCAAACAAGTTT
TAGTTCTTCGATGGTAGATTCTTCGATTATTTCATCAATGTCGTCAACAT
CCACCAGTCTGAAATTCTGTCTTGACAACTTAAATTGACGCTTTACACGT
TGGTGCAAAATAGCGTTAGCATCACTAGGTAATTGGTGACAATTTTTCAA
ATGGGGAAAACAATCAATGGACTTCCAATGCATATTGTTTAAGTGATAGG
TAGCTGAAACAAGCTGTTTTGTACACatcaattttttaagaacattataa
aaaCGGC

Coding sequence (CDS) from alignment at scaffold_64:311313..311919

>TCONS_00071907 ID=TCONS_00071907|Name=TCONS_00071907|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_64:311313..311919 (Clytia hemisphaerica)
TCACTTCAGCATTTCAGTTCCAGCACCGAGGGTTGTTGCTGAGTCACTCT
GATTTTTATCTACCATGGCGATTTCAAGAAAAAGATGACGCATTTCCTCC
TTTTCATCCTCCTCTTGCTTCTCTTGCTCAGCAAGTTCCTCTCTTTCCTC
GTTTACTCTCATGCAAACAAGTTTTAGTTCTTCGATGGTAGATTCTTCGA
TTATTTCATCAATGTCGTCAACATCCACCAGTCTGAAATTCTGTCTTGAC
AACTTAAATTGACGCTTTACACGTTGGTGCAAAATAGCGTTAGCATCACT
AGGTAATTGGTGACAATTTTTCAAATGGGGAAAACAATCAATGGACTTCC
AATGCATATTGTTTAAGTGATAGGTAGCTGAAACAAGCTGTTTTGTACAC
atcaattttttaagaacattataaaaaCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044645XLOC_044645Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071907-proteinTCONS_00071907-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071907-exon-scaffold_64-1491911889:311313..311919TCONS_00071907-exon-scaffold_64-1491911889:311313..311919Clytia hemisphaericaexon
TCONS_00071907-exon-scaffold_64-1510915933:311313..311919TCONS_00071907-exon-scaffold_64-1510915933:311313..311919Clytia hemisphaericaexon
TCONS_00071907-exon-scaffold_64-1575043694:311313..311919TCONS_00071907-exon-scaffold_64-1575043694:311313..311919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:311313..311919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.201858	0.0987432	2.76484	3.13473	0.229207	0.429162	0	0.093044	0	0.1781	0	0	0.101233	0	0	0	0	0.198315	0.172371	0	0	0	0.191411	0.17083	0.122229	0	0	0.100803
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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