TCONS_00071903 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071903
Unique NameTCONS_00071903
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071903 ID=TCONS_00071903|Name=TCONS_00071903|organism=Clytia hemisphaerica|type=transcript|length=455bp
GTCCAAGCAAACGCGTCAGAGCCAGCTTTATAATGACGTCATATAAAAGA
CATACATCGTGATTCTCTTGTTTTGTACGAACTCCAGTTGAACTGAGGGT
GAATNTTTGATACATCCTTAGGCTAACCCCCGAAAAGTGAATAAATGATT
TATTTAGCTTCATCTATATTTCAGTTTTGTATTTTAACTCACTTCATGCA
GGGGTGTCATGTATGGCAAACCTGACTTCCTGGTATATTTCGAAACACAA
TTTTGTGCAATTCATTGTTGGTAATTTTGTGCAAATATGGAATTGAGAAT
TTCGATTGGTGAGTATATTGGTCCAAATGACGTCAATTGGAGAAAGTCTA
TGGagtctttttaaataaaaacgcCTCCTAGTAATCTTAGACTTATATTT
TGTTTATTATCGCTTGACACTAGATGACGTAATGATAAATGTCAAAGCGA
ATTGG
Run BLAST on NCBI

transcript from alignment at scaffold_64:190379..190833

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071903 ID=TCONS_00071903|Name=TCONS_00071903|organism=Clytia hemisphaerica|type=transcript|length=455bp|location=Sequence derived from alignment at scaffold_64:190379..190833 (Clytia hemisphaerica)
CCAATTCGCTTTGACATTTATCATTACGTCATCTAGTGTCAAGCGATAAT
AAACAAAATATAAGTCTAAGATTACTAGGAGgcgtttttatttaaaaaga
ctCCATAGACTTTCTCCAATTGACGTCATTTGGACCAATATACTCACCAA
TCGAAATTCTCAATTCCATATTTGCACAAAATTACCAACAATGAATTGCA
CAAAATTGTGTTTCGAAATATACCAGGAAGTCAGGTTTGCCATACATGAC
ACCCCTGCATGAAGTGAGTTAAAATACAAAACTGAAATATAGATGAAGCT
AAATAAATCATTTATTCACTTTTCGGGGGTTAGCCTAAGGATGTATCAAA
NATTCACCCTCAGTTCAACTGGAGTTCGTACAAAACAAGAGAATCACGAT
GTATGTCTTTTATATGACGTCATTATAAAGCTGGCTCTGACGCGTTTGCT
TGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044641XLOC_044641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071903-exon-scaffold_64-1491911889:190379..190833TCONS_00071903-exon-scaffold_64-1491911889:190379..190833Clytia hemisphaericaexon
TCONS_00071903-exon-scaffold_64-1510915933:190379..190833TCONS_00071903-exon-scaffold_64-1510915933:190379..190833Clytia hemisphaericaexon
TCONS_00071903-exon-scaffold_64-1575043694:190379..190833TCONS_00071903-exon-scaffold_64-1575043694:190379..190833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:190379..190833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.24306	0.752673	0	1.63283	0.671406	1.0957	0.655136	0.175765	0	0.332902	0.459922	0.802126	0.418316	0.612119	0	0	0	0.276384	0	0.211046	0	0.163087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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