TCONS_00071901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071901
Unique NameTCONS_00071901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071901 ID=TCONS_00071901|Name=TCONS_00071901|organism=Clytia hemisphaerica|type=transcript|length=467bp
GAAAAATTGGGTGAAAATACCCAAGAAAATAATTGTCGCACTTCCCTCCT
TTCCTTTGGACACTAAATTCATTGAATGATATTTCTACACTGGCCCATTT
AACAACNCCGATTGCCGAGGATGTGTTTACCGAGGTTCAAGATATTCGAC
GAGTACATCATCGTCCATCATTTCCATATTACCGAGACCGAAAATCTCCG
TGCAAATCGAGGCTACATTCTGAATCTAGTGTAGAACTACCACAACGGTC
TAGACTTCAATCTCATCCTTTCTTCGAGCCAAAAGAAACAGAGAGATATG
CAAAGAACATTGAGAAATCGCCAGCTAAACATGCACNCCTTCAGATGTTT
TGAAGCCAGaggcaccatggaaatgtgttTACTGTTCAGACGGTTTGAAA
AATCCGTACGTCGAGTCCAACCCCTTCAATGAAAATGAGGCTGAgacaaa
agaaaataacaataaag
Run BLAST on NCBI

transcript from alignment at scaffold_64:182612..183078

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071901 ID=TCONS_00071901|Name=TCONS_00071901|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at scaffold_64:182612..183078 (Clytia hemisphaerica)
ctttattgttattttcttttgtcTCAGCCTCATTTTCATTGAAGGGGTTG
GACTCGACGTACGGATTTTTCAAACCGTCTGAACAGTAaacacatttcca
tggtgcctCTGGCTTCAAAACATCTGAAGGNGTGCATGTTTAGCTGGCGA
TTTCTCAATGTTCTTTGCATATCTCTCTGTTTCTTTTGGCTCGAAGAAAG
GATGAGATTGAAGTCTAGACCGTTGTGGTAGTTCTACACTAGATTCAGAA
TGTAGCCTCGATTTGCACGGAGATTTTCGGTCTCGGTAATATGGAAATGA
TGGACGATGATGTACTCGTCGAATATCTTGAACCTCGGTAAACACATCCT
CGGCAATCGGNGTTGTTAAATGGGCCAGTGTAGAAATATCATTCAATGAA
TTTAGTGTCCAAAGGAAAGGAGGGAAGTGCGACAATTATTTTCTTGGGTA
TTTTCACCCAATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044639XLOC_044639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071901-exon-scaffold_64-1491911889:182612..183078TCONS_00071901-exon-scaffold_64-1491911889:182612..183078Clytia hemisphaericaexon
TCONS_00071901-exon-scaffold_64-1510915933:182612..183078TCONS_00071901-exon-scaffold_64-1510915933:182612..183078Clytia hemisphaericaexon
TCONS_00071901-exon-scaffold_64-1575043694:182612..183078TCONS_00071901-exon-scaffold_64-1575043694:182612..183078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:182612..183078 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137511	0	0.155697	0	0.927204	0.732689	7.68151	8.82657	7.80571	40.6141	13.5852	44.9222	32.1457	21.6489	26.4116	20.0244	12.5364	50.2405	90.2694	103.423	4.87462	8.95382	3.6956	4.71652	18.3575	10.7953	42.3306	33.3563	32.7803	23.1483
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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