Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071900 ID=TCONS_00071900|Name=TCONS_00071900|organism=Clytia hemisphaerica|type=transcript|length=1052bp
CCAACGTTTAAAGGAGATACTGCGGAAAGTAAATCATGGGTAAAGACAAT
CTGAGAAACATTCTAAGGAACGTATTTAATTAATTTACCATCTGGCTATC
ACTGTCATTCACTAACATTCTGCTGCATTCTGTCGATTGGTATGAAGGAT
TCGATCACAGACTTAAACCCCAATAGACTCGTGTTCGCGTCCCATAGCCT
TCCAGACACAGTGTTTTAGGAAAGTACAGTGATAGATTTTCTACTTTCAC
TGATACAACTTTATCAAATTAATTAAAATATATTCTATCTGAACGTTGGA
ATTTGACAAAGTTGAAATTTGCATGAAATACTGTATGTAATCATAGCCAG
ACATCTCTGAAAATGAGATTCCCATCTGCCAAGAAGTTATTACAGCATGA
ATGATGTCCAGGACGTTTACAATCTATCCAATGTCCTACTTTATCATACT
CCATCCAGGAGTTGATTCCTCCAACATCAGCCCAGTGTTGTTGATGCTTT
AGAACGTCTACACCATAGTGGGATCTACAGTAAGATCCAGGATTCACCGG
TACTTTCATCCATTGTTCACCTACTTGACCTTTAGTTGGACCTAATAACC
ATCTACCTTTGTTTTGATACAAGTTACTACCAAGGATACTTTGACCAATT
AACTCAATTCTCCAAGTCTTGGATTTGATGCCCATATAACCACACGTCAA
CGATTTATTTGCGATACATTTATCTAAGTCTGTAAATCGAGCTTTCTGGA
TGTAACCACGTGACAGAAAAGTATTGTTTAATGTTGCCAAATGTTTAAAA
TGTTTTGGTTTGAAGACCAAATCGTGATCTCTTTCCCAGGGTAGAGTTGC
TGATAGCTTCGTTTGACCCACTACGGAACCAGAATCTAATTCATACTCAT
ATTTTTGTTGGTCTAAAACTTTAGTTATGAACAGAAGTAACGTGTTTAGT
TCATCTATTGCACATTTTGGTATAAACATACCTACGTTTTGCATTTGCAA
ATATCCTCCACCGTTAATGTTAACTTGATTGCATTGAAAATCATGGTGAA
AC Run BLAST on NCBI protein sequence of TCONS_00071900-protein >TCONS_00071900-protein ID=TCONS_00071900-protein|Name=TCONS_00071900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
FHHDFQCNQVNINGGGYLQMQNVGMFIPKCAIDELNTLLLFITKVLDQQK
YEYELDSGSVVGQTKLSATLPWERDHDLVFKPKHFKHLATLNNTFLSRGY
IQKARFTDLDKCIANKSLTCGYMGIKSKTWRIELIGQSILGSNLYQNKGR
WLLGPTKGQVGEQWMKVPVNPGSYCRSHYGVDVLKHQQHWADVGGINSWM
EYDKVGHWIDCKRPGHHSCCNNFLADGNLIFRDVWL Run BLAST on NCBI transcript from alignment at scaffold_64:146697..147748 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071900 ID=TCONS_00071900|Name=TCONS_00071900|organism=Clytia hemisphaerica|type=transcript|length=1052bp|location=Sequence derived from alignment at scaffold_64:146697..147748 (Clytia hemisphaerica)
GTTTCACCATGATTTTCAATGCAATCAAGTTAACATTAACGGTGGAGGAT
ATTTGCAAATGCAAAACGTAGGTATGTTTATACCAAAATGTGCAATAGAT
GAACTAAACACGTTACTTCTGTTCATAACTAAAGTTTTAGACCAACAAAA
ATATGAGTATGAATTAGATTCTGGTTCCGTAGTGGGTCAAACGAAGCTAT
CAGCAACTCTACCCTGGGAAAGAGATCACGATTTGGTCTTCAAACCAAAA
CATTTTAAACATTTGGCAACATTAAACAATACTTTTCTGTCACGTGGTTA
CATCCAGAAAGCTCGATTTACAGACTTAGATAAATGTATCGCAAATAAAT
CGTTGACGTGTGGTTATATGGGCATCAAATCCAAGACTTGGAGAATTGAG
TTAATTGGTCAAAGTATCCTTGGTAGTAACTTGTATCAAAACAAAGGTAG
ATGGTTATTAGGTCCAACTAAAGGTCAAGTAGGTGAACAATGGATGAAAG
TACCGGTGAATCCTGGATCTTACTGTAGATCCCACTATGGTGTAGACGTT
CTAAAGCATCAACAACACTGGGCTGATGTTGGAGGAATCAACTCCTGGAT
GGAGTATGATAAAGTAGGACATTGGATAGATTGTAAACGTCCTGGACATC
ATTCATGCTGTAATAACTTCTTGGCAGATGGGAATCTCATTTTCAGAGAT
GTCTGGCTATGATTACATACAGTATTTCATGCAAATTTCAACTTTGTCAA
ATTCCAACGTTCAGATAGAATATATTTTAATTAATTTGATAAAGTTGTAT
CAGTGAAAGTAGAAAATCTATCACTGTACTTTCCTAAAACACTGTGTCTG
GAAGGCTATGGGACGCGAACACGAGTCTATTGGGGTTTAAGTCTGTGATC
GAATCCTTCATACCAATCGACAGAATGCAGCAGAATGTTAGTGAATGACA
GTGATAGCCAGATGGTAAATTAATTAAATACGTTCCTTAGAATGTTTCTC
AGATTGTCTTTACCCATGATTTACTTTCCGCAGTATCTCCTTTAAACGTT
GG Coding sequence (CDS) from alignment at scaffold_64:146697..147748 >TCONS_00071900 ID=TCONS_00071900|Name=TCONS_00071900|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_64:146697..147748 (Clytia hemisphaerica)
TTTCACCATGATTTTCAATGCAATCAAGTTAACATTAACGGTGGAGGATA
TTTGCAAATGCAAAACGTAGGTATGTTTATACCAAAATGTGCAATAGATG
AACTAAACACGTTACTTCTGTTCATAACTAAAGTTTTAGACCAACAAAAA
TATGAGTATGAATTAGATTCTGGTTCCGTAGTGGGTCAAACGAAGCTATC
AGCAACTCTACCCTGGGAAAGAGATCACGATTTGGTCTTCAAACCAAAAC
ATTTTAAACATTTGGCAACATTAAACAATACTTTTCTGTCACGTGGTTAC
ATCCAGAAAGCTCGATTTACAGACTTAGATAAATGTATCGCAAATAAATC
GTTGACGTGTGGTTATATGGGCATCAAATCCAAGACTTGGAGAATTGAGT
TAATTGGTCAAAGTATCCTTGGTAGTAACTTGTATCAAAACAAAGGTAGA
TGGTTATTAGGTCCAACTAAAGGTCAAGTAGGTGAACAATGGATGAAAGT
ACCGGTGAATCCTGGATCTTACTGTAGATCCCACTATGGTGTAGACGTTC
TAAAGCATCAACAACACTGGGCTGATGTTGGAGGAATCAACTCCTGGATG
GAGTATGATAAAGTAGGACATTGGATAGATTGTAAACGTCCTGGACATCA
TTCATGCTGTAATAACTTCTTGGCAGATGGGAATCTCATTTTCAGAGATG
TCTGGCTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071900-exon-scaffold_64-1491911889:146697..147748 | TCONS_00071900-exon-scaffold_64-1491911889:146697..147748 | Clytia hemisphaerica | exon |
| TCONS_00071900-exon-scaffold_64-1510915933:146697..147748 | TCONS_00071900-exon-scaffold_64-1510915933:146697..147748 | Clytia hemisphaerica | exon |
| TCONS_00071900-exon-scaffold_64-1575043694:146697..147748 | TCONS_00071900-exon-scaffold_64-1575043694:146697..147748 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:146697..147748 . |
Blast
The following BLAST results are available for this feature:
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