Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071893 ID=TCONS_00071893|Name=TCONS_00071893|organism=Clytia hemisphaerica|type=transcript|length=2135bp
aaattccTTGGTGAGGATTGGGTCTATTGGATCTGTGACAAAGGCGTGGG
GTTATCAATAAATGTTCCTCTTTTCATTTCAGTGTAAAACCAACCAAAAT
GAATGTAAATGCATTTTCAATTGCATTGCTGTTACATTATCTCAGTGAAA
CCAATGTGGTGGATTGCCAAAGACCATCAGTCAGTTTACTGCTTCATCCG
GATCGAAACTGGTCTTCCATAGGATGTCCTAGCTCAGTAACAAACCATGA
TTCACAAACAGATCATTTCAAAGACAATAATGTTCGATTTATTTGTCGGT
TAGTGGAAAGAGATAAACAGATTGTTGACTATCCATATCATTTCACATTG
TTTATGATGGTTGATTCGAAATCGATTCTCAATTATGGTTGTCAGACAAT
AGGGCATTGTTTCTCAATAAGTATTACACAACCTGGAACAGATCAAATCC
AAATTGAGATCAAGACATTTAAAGAATGCTTTACAGGTCGTATACCATTT
CGTTTTGAATTACGGCAAATAAACACCTTAATAAGCGCTGGCACGCTGAA
TGTTATTTTTGCCCGACAAGTTGTGGTACCTTTACGTCTCAATTTCCGTT
TGAACCAATCAATGCCGATTGCTTTGGATGGGAATGTAGATATCCAATGC
GCGGAAGATTTTAAAACTTCAGTTTACGAGATGGTATATAGCGTTCGTGG
TAAACCAGAATGCCAAACAAGTAATTTTACTGTTTGCCAGAAATTCCAAC
ATGGGAAAGATGTATTTTCGATTAGTTGCCCATTAGATACTGTTTGTGAT
TCAGATATCATGTGCAGTGCAATTATAACAGCACAAATATTCACTTATAA
TAAATTTGGACAAATGAGCAAACCAAGCAGGAAATTCTCAAAATCTTTAG
CGTTTCTTACGAGTCGTGGAGAAATAGATTTGAATATTACAGGACAGACT
TTAAACACGATgacattttctttccaaagaccAGTCAGCTGTACTGAAGT
TCATCAACACTTCCAATACAGAATCATATATAAAAATGCTGACAGCGACG
ATGAGAAATGGACAAATTTCAAAGGTGAAACTTGCATCTCAAACGATGCC
GGCAACAAAGAGTCTACCGATTCTGGACATTGCAGTGTCTTACTAAATAG
TTTACACATGAACACAATGTATAACATTTGTTTATCCTATCGAAACATAT
TTGATATCCAAGAAAGATACAGTGCGCTTATTTGCCAGAACTCCAGTACG
GCTCAATTACCATGCACTCCACCTAGATTAACCAAGATTCTACCAATTGA
AGACAATGCTGATAACAATCACTGGAAAGCTAATCTGTATTGGACTCAAG
TGGAGCCAGATTGCTGGAACGACAAGTATGACTCAAATTCTACCCACCAT
TACTATCTAATAGAGCTTTACGATGGAAATCAGACTCAAGAGATAGCAGT
CCCATCTTTTCAGAACTATTCGATAGACATTTTAACTCGTCTTCGATACA
AGCATAAATACATGGTCTTGCTATCAGCTTGTAATGTTTACGGATGCATT
AATGGTCCCAAGAGTTATATGTATGTACTGAAAGAGAAGGAGGGTGATAC
TGGTCATCAATCATCTCAAACTTTAACAGAAACCGTTTTGATATGTGTTC
TCTCACTGTTATTCTTGACTGCTAGTAGCTGTCTATATTGGATActcaaa
aaacgtaaacaatTTCAACGCTTTCAAACGATGAAACGAAAATTGAAGCC
AGAGGATATAAAAGTGGTGAGACCTGATTGTGAGATGGTTGATCTCACTA
CAGGGAAGCTTACCCCTCGAGGTGGAGTGGTAGCTGAGGAGGGAGCTCTC
GCCTCTAAGATACATCCTGATGATAGACGCATAATAACGGTCGATACTAG
ACCGTTGCTAAGCCGGAAAATCAGTATTGTTAATAGTGGCGTTGTGCCTG
CGAACAGCACTTTGGTTTGACAGTAGGCTTGATGTTTCACAACATCTTCA
AGAGAAAAACAGACTGAATAGTAATCTATCAGATTGTCGAAATTTTTTCA
TAATGATATTCATATTTTCTtagttttgttatttttatagatttttacaG
TAAATTTTATTATTAAACAAACCATTATAGTTTCA Run BLAST on NCBI protein sequence of TCONS_00071893-protein >TCONS_00071893-protein ID=TCONS_00071893-protein|Name=TCONS_00071893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=623bp
MNVNAFSIALLLHYLSETNVVDCQRPSVSLLLHPDRNWSSIGCPSSVTNH
DSQTDHFKDNNVRFICRLVERDKQIVDYPYHFTLFMMVDSKSILNYGCQT
IGHCFSISITQPGTDQIQIEIKTFKECFTGRIPFRFELRQINTLISAGTL
NVIFARQVVVPLRLNFRLNQSMPIALDGNVDIQCAEDFKTSVYEMVYSVR
GKPECQTSNFTVCQKFQHGKDVFSISCPLDTVCDSDIMCSAIITAQIFTY
NKFGQMSKPSRKFSKSLAFLTSRGEIDLNITGQTLNTMTFSFQRPVSCTE
VHQHFQYRIIYKNADSDDEKWTNFKGETCISNDAGNKESTDSGHCSVLLN
SLHMNTMYNICLSYRNIFDIQERYSALICQNSSTAQLPCTPPRLTKILPI
EDNADNNHWKANLYWTQVEPDCWNDKYDSNSTHHYYLIELYDGNQTQEIA
VPSFQNYSIDILTRLRYKHKYMVLLSACNVYGCINGPKSYMYVLKEKEGD
TGHQSSQTLTETVLICVLSLLFLTASSCLYWILKKRKQFQRFQTMKRKLK
PEDIKVVRPDCEMVDLTTGKLTPRGGVVAEEGALASKIHPDDRRIITVDT
RPLLSRKISIVNSGVVPANSTLV Run BLAST on NCBI transcript from alignment at scaffold_64:87462..89596 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071893 ID=TCONS_00071893|Name=TCONS_00071893|organism=Clytia hemisphaerica|type=transcript|length=2135bp|location=Sequence derived from alignment at scaffold_64:87462..89596 (Clytia hemisphaerica)
TGAAACTATAATGGTTTGTTTAATAATAAAATTTACtgtaaaaatctata
aaaataacaaaactaAGAAAATATGAATATCATTATGAAAAAATTTCGAC
AATCTGATAGATTACTATTCAGTCTGTTTTTCTCTTGAAGATGTTGTGAA
ACATCAAGCCTACTGTCAAACCAAAGTGCTGTTCGCAGGCACAACGCCAC
TATTAACAATACTGATTTTCCGGCTTAGCAACGGTCTAGTATCGACCGTT
ATTATGCGTCTATCATCAGGATGTATCTTAGAGGCGAGAGCTCCCTCCTC
AGCTACCACTCCACCTCGAGGGGTAAGCTTCCCTGTAGTGAGATCAACCA
TCTCACAATCAGGTCTCACCACTTTTATATCCTCTGGCTTCAATTTTCGT
TTCATCGTTTGAAAGCGTTGAAattgtttacgttttttgagTATCCAATA
TAGACAGCTACTAGCAGTCAAGAATAACAGTGAGAGAACACATATCAAAA
CGGTTTCTGTTAAAGTTTGAGATGATTGATGACCAGTATCACCCTCCTTC
TCTTTCAGTACATACATATAACTCTTGGGACCATTAATGCATCCGTAAAC
ATTACAAGCTGATAGCAAGACCATGTATTTATGCTTGTATCGAAGACGAG
TTAAAATGTCTATCGAATAGTTCTGAAAAGATGGGACTGCTATCTCTTGA
GTCTGATTTCCATCGTAAAGCTCTATTAGATAGTAATGGTGGGTAGAATT
TGAGTCATACTTGTCGTTCCAGCAATCTGGCTCCACTTGAGTCCAATACA
GATTAGCTTTCCAGTGATTGTTATCAGCATTGTCTTCAATTGGTAGAATC
TTGGTTAATCTAGGTGGAGTGCATGGTAATTGAGCCGTACTGGAGTTCTG
GCAAATAAGCGCACTGTATCTTTCTTGGATATCAAATATGTTTCGATAGG
ATAAACAAATGTTATACATTGTGTTCATGTGTAAACTATTTAGTAAGACA
CTGCAATGTCCAGAATCGGTAGACTCTTTGTTGCCGGCATCGTTTGAGAT
GCAAGTTTCACCTTTGAAATTTGTCCATTTCTCATCGTCGCTGTCAGCAT
TTTTATATATGATTCTGTATTGGAAGTGTTGATGAACTTCAGTACAGCTG
ACTggtctttggaaagaaaatgtcATCGTGTTTAAAGTCTGTCCTGTAAT
ATTCAAATCTATTTCTCCACGACTCGTAAGAAACGCTAAAGATTTTGAGA
ATTTCCTGCTTGGTTTGCTCATTTGTCCAAATTTATTATAAGTGAATATT
TGTGCTGTTATAATTGCACTGCACATGATATCTGAATCACAAACAGTATC
TAATGGGCAACTAATCGAAAATACATCTTTCCCATGTTGGAATTTCTGGC
AAACAGTAAAATTACTTGTTTGGCATTCTGGTTTACCACGAACGCTATAT
ACCATCTCGTAAACTGAAGTTTTAAAATCTTCCGCGCATTGGATATCTAC
ATTCCCATCCAAAGCAATCGGCATTGATTGGTTCAAACGGAAATTGAGAC
GTAAAGGTACCACAACTTGTCGGGCAAAAATAACATTCAGCGTGCCAGCG
CTTATTAAGGTGTTTATTTGCCGTAATTCAAAACGAAATGGTATACGACC
TGTAAAGCATTCTTTAAATGTCTTGATCTCAATTTGGATTTGATCTGTTC
CAGGTTGTGTAATACTTATTGAGAAACAATGCCCTATTGTCTGACAACCA
TAATTGAGAATCGATTTCGAATCAACCATCATAAACAATGTGAAATGATA
TGGATAGTCAACAATCTGTTTATCTCTTTCCACTAACCGACAAATAAATC
GAACATTATTGTCTTTGAAATGATCTGTTTGTGAATCATGGTTTGTTACT
GAGCTAGGACATCCTATGGAAGACCAGTTTCGATCCGGATGAAGCAGTAA
ACTGACTGATGGTCTTTGGCAATCCACCACATTGGTTTCACTGAGATAAT
GTAACAGCAATGCAATTGAAAATGCATTTACATTCATTTTGGTTGGTTTT
ACACTGAAATGAAAAGAGGAACATTTATTGATAACCCCACGCCTTTGTCA
CAGATCCAATAGACCCAATCCTCACCAAggaattt Coding sequence (CDS) from alignment at scaffold_64:87462..89596 >TCONS_00071893 ID=TCONS_00071893|Name=TCONS_00071893|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at scaffold_64:87462..89596 (Clytia hemisphaerica)
TCAAACCAAAGTGCTGTTCGCAGGCACAACGCCACTATTAACAATACTGA
TTTTCCGGCTTAGCAACGGTCTAGTATCGACCGTTATTATGCGTCTATCA
TCAGGATGTATCTTAGAGGCGAGAGCTCCCTCCTCAGCTACCACTCCACC
TCGAGGGGTAAGCTTCCCTGTAGTGAGATCAACCATCTCACAATCAGGTC
TCACCACTTTTATATCCTCTGGCTTCAATTTTCGTTTCATCGTTTGAAAG
CGTTGAAattgtttacgttttttgagTATCCAATATAGACAGCTACTAGC
AGTCAAGAATAACAGTGAGAGAACACATATCAAAACGGTTTCTGTTAAAG
TTTGAGATGATTGATGACCAGTATCACCCTCCTTCTCTTTCAGTACATAC
ATATAACTCTTGGGACCATTAATGCATCCGTAAACATTACAAGCTGATAG
CAAGACCATGTATTTATGCTTGTATCGAAGACGAGTTAAAATGTCTATCG
AATAGTTCTGAAAAGATGGGACTGCTATCTCTTGAGTCTGATTTCCATCG
TAAAGCTCTATTAGATAGTAATGGTGGGTAGAATTTGAGTCATACTTGTC
GTTCCAGCAATCTGGCTCCACTTGAGTCCAATACAGATTAGCTTTCCAGT
GATTGTTATCAGCATTGTCTTCAATTGGTAGAATCTTGGTTAATCTAGGT
GGAGTGCATGGTAATTGAGCCGTACTGGAGTTCTGGCAAATAAGCGCACT
GTATCTTTCTTGGATATCAAATATGTTTCGATAGGATAAACAAATGTTAT
ACATTGTGTTCATGTGTAAACTATTTAGTAAGACACTGCAATGTCCAGAA
TCGGTAGACTCTTTGTTGCCGGCATCGTTTGAGATGCAAGTTTCACCTTT
GAAATTTGTCCATTTCTCATCGTCGCTGTCAGCATTTTTATATATGATTC
TGTATTGGAAGTGTTGATGAACTTCAGTACAGCTGACTggtctttggaaa
gaaaatgtcATCGTGTTTAAAGTCTGTCCTGTAATATTCAAATCTATTTC
TCCACGACTCGTAAGAAACGCTAAAGATTTTGAGAATTTCCTGCTTGGTT
TGCTCATTTGTCCAAATTTATTATAAGTGAATATTTGTGCTGTTATAATT
GCACTGCACATGATATCTGAATCACAAACAGTATCTAATGGGCAACTAAT
CGAAAATACATCTTTCCCATGTTGGAATTTCTGGCAAACAGTAAAATTAC
TTGTTTGGCATTCTGGTTTACCACGAACGCTATATACCATCTCGTAAACT
GAAGTTTTAAAATCTTCCGCGCATTGGATATCTACATTCCCATCCAAAGC
AATCGGCATTGATTGGTTCAAACGGAAATTGAGACGTAAAGGTACCACAA
CTTGTCGGGCAAAAATAACATTCAGCGTGCCAGCGCTTATTAAGGTGTTT
ATTTGCCGTAATTCAAAACGAAATGGTATACGACCTGTAAAGCATTCTTT
AAATGTCTTGATCTCAATTTGGATTTGATCTGTTCCAGGTTGTGTAATAC
TTATTGAGAAACAATGCCCTATTGTCTGACAACCATAATTGAGAATCGAT
TTCGAATCAACCATCATAAACAATGTGAAATGATATGGATAGTCAACAAT
CTGTTTATCTCTTTCCACTAACCGACAAATAAATCGAACATTATTGTCTT
TGAAATGATCTGTTTGTGAATCATGGTTTGTTACTGAGCTAGGACATCCT
ATGGAAGACCAGTTTCGATCCGGATGAAGCAGTAAACTGACTGATGGTCT
TTGGCAATCCACCACATTGGTTTCACTGAGATAATGTAACAGCAATGCAA
TTGAAAATGCATTTACATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071893-exon-scaffold_64-1491911889:87462..89596 | TCONS_00071893-exon-scaffold_64-1491911889:87462..89596 | Clytia hemisphaerica | exon |
| TCONS_00071893-exon-scaffold_64-1510915933:87462..89596 | TCONS_00071893-exon-scaffold_64-1510915933:87462..89596 | Clytia hemisphaerica | exon |
| TCONS_00071893-exon-scaffold_64-1575043694:87462..89596 | TCONS_00071893-exon-scaffold_64-1575043694:87462..89596 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:87462..89596 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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