TCONS_00071892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071892
Unique NameTCONS_00071892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071892 ID=TCONS_00071892|Name=TCONS_00071892|organism=Clytia hemisphaerica|type=transcript|length=346bp
agccgggtcataccagagattttcaaaatggtacttgatgcctctctgct
agATGCAGatgcaatccagggagaaagagtggcgccctcccctaccttcg
ggtggatagctatcgaaagaggagccttcgggtcgcctccgactgcggtc
gcagccTTACTTACTTACTAGAAAATATACCACTGTAGTGTAAAACTGAA
TGATCTGGGATGAGCTGATTGGCGACGACGTAAACTATGGAAGCATACAC
ACACTGATCAGTATAAAGCGACCGCCAATTATCTCTAAACAATAGCATGA
TATGTCAGCTCACGCTGTGAGCACTTGAATTAACTTAAAGGTATCT
Run BLAST on NCBI

transcript from alignment at scaffold_64:23561..23906

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071892 ID=TCONS_00071892|Name=TCONS_00071892|organism=Clytia hemisphaerica|type=transcript|length=346bp|location=Sequence derived from alignment at scaffold_64:23561..23906 (Clytia hemisphaerica)
AGATACCTTTAAGTTAATTCAAGTGCTCACAGCGTGAGCTGACATATCAT
GCTATTGTTTAGAGATAATTGGCGGTCGCTTTATACTGATCAGTGTGTGT
ATGCTTCCATAGTTTACGTCGTCGCCAATCAGCTCATCCCAGATCATTCA
GTTTTACACTACAGTGGTATATTTTCTAGTAAGTAAGTAAggctgcgacc
gcagtcggaggcgacccgaaggctcctctttcgatagctatccacccgaa
ggtaggggagggcgccactctttctccctggattgcatCTGCATctagca
gagaggcatcaagtaccattttgaaaatctctggtatgacccggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044630XLOC_044630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071892-exon-scaffold_64-1491911889:23561..23906TCONS_00071892-exon-scaffold_64-1491911889:23561..23906Clytia hemisphaericaexon
TCONS_00071892-exon-scaffold_64-1510915933:23561..23906TCONS_00071892-exon-scaffold_64-1510915933:23561..23906Clytia hemisphaericaexon
TCONS_00071892-exon-scaffold_64-1575043694:23561..23906TCONS_00071892-exon-scaffold_64-1575043694:23561..23906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:23561..23906 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820999	0.304279	4.06015	2.30891	0.353799	0	0.687462	0.975143	0.697386	1.17432	0.536161	1.0647	1.28637	1.89877	1.58047	1.14877	2.22986	1.4106	1.41366	0.922744	0.518089	1.5774	0.603343	0.279428	0	0.503693	1.26274	1.89726	0.912842	0.613929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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