TCONS_00071891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071891
Unique NameTCONS_00071891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=transcript|length=1337bp
GAAAATCAATGTATTGAGGTATCTTTTTCTAACCGTCATTCGGGTAAATT
CCCATGCGAAGCAAATAAAACAAGACTTTGTGTgtcaagaaaagaagaaa
acattcAACTTGATTGTGTATTGGTTAAAAAGGAAGAGTTACATCTTTGA
TAAGATAAAAAGGCAGCCACTATAGAACTCTTATTTAACTTggcgaagaa
gaagaagaaaataacaCCCATCGACAACAACAAGATACTTAATCGAAGAT
AAGGaacaaaaataatataaaaacgTGATAAGAGAAAACAAGGCTATGTC
ATTAAAAAGCATTCTGATATTATCCCTTTATTGGATGTTAGTTCATAATA
CGCCACTCAATATTATAAAAAGCACACCAAAATGTCCGTACCGTCGCTGG
TATGGTTGCCAGAAGCCAGAAACCAAAAGAGGAGTGTCAGTATCTAAAGA
TCTTCTCCTATTGGTCAACAGGGGAACAATGAACTCCAAAGGTTACCAGA
AAACCTTCATATCAGAAAACTTTGGATACAATGATCGAACTGCTGGACAG
GAGGAAACTTCCCACCAAAATTACAATGAAATGAATGAGGGAAAACTTAC
CAATGGCAATAGACAACCGATTGACAAGGCTGTTGACACAACCTTGATGC
AAGCTGGACAACAACTATCTCAAAATCAACAGCAACAAAAAGGAACACAA
AAACATCAAAGACAACCAGAACAACAACAAAGATATCCAGAGCTGCCACA
AGAACTACCACAGGGAATATTAAAACAACATGAAAAAAGCCCACAGCAAA
GCCATCACAAATTGAAAACAGAAGCTCTTGAACAAGACCTgatagaacaa
cagcaacaagaagttccacaacaacaacaaaaacaaatggAAGATCAACA
ACAGAAAAGGCAACTTCAAAAAGAGCTGAGAGAAGAATTCAACGATGAAG
AAAGAGAAGAACTATCGCAGCTTCGAGAAACTGGCCAAGAATCACAAATG
GTGACGTTACCAAAGGAATTTCAAAATATGGCTCTCTTACTGTCCCTTAA
GAAACAGTGGGAAAATGAACACAGATTCAAAGACCGAAGAAATTATGAGG
ACAGAACTGATGTCGAAAACAACTTAGTAAAGTAAACAATCTCTGCTAAG
ATCAATAtttattatcaattttatcgaaaGATTTGGGATTTTTCCTAATT
TCATCGTTATTTTTTTCCATACACCGTTATTCtattttacagcaaaaatg
agaatcagaatcaattttgaatttttttgtcaaaccTCTATTCCTCAAAG
TATTTAATAAACGCTTCATTCAATAATGATCTCCAAT
Run BLAST on NCBI

protein sequence of TCONS_00071891-protein

>TCONS_00071891-protein ID=TCONS_00071891-protein|Name=TCONS_00071891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MSLKSILILSLYWMLVHNTPLNIIKSTPKCPYRRWYGCQKPETKRGVSVS
KDLLLLVNRGTMNSKGYQKTFISENFGYNDRTAGQEETSHQNYNEMNEGK
LTNGNRQPIDKAVDTTLMQAGQQLSQNQQQQKGTQKHQRQPEQQQRYPEL
PQELPQGILKQHEKSPQQSHHKLKTEALEQDLIEQQQQEVPQQQQKQMED
QQQKRQLQKELREEFNDEEREELSQLRETGQESQMVTLPKEFQNMALLLS
LKKQWENEHRFKDRRNYEDRTDVENNLVK
Run BLAST on NCBI

transcript from alignment at scaffold_64:12614..13950

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at scaffold_64:12614..13950 (Clytia hemisphaerica)
ATTGGAGATCATTATTGAATGAAGCGTTTATTAAATACTTTGAGGAATAG Aggtttgacaaaaaaattcaaaattgattctgattctcatttttgctgta aaataGAATAACGGTGTATGGAAAAAAATAACGATGAAATTAGGAAAAAT CCCAAATCtttcgataaaattgataataaaTATTGATCTTAGCAGAGATT GTTTACTTTACTAAGTTGTTTTCGACATCAGTTCTGTCCTCATAATTTCT TCGGTCTTTGAATCTGTGTTCATTTTCCCACTGTTTCTTAAGGGACAGTA AGAGAGCCATATTTTGAAATTCCTTTGGTAACGTCACCATTTGTGATTCT TGGCCAGTTTCTCGAAGCTGCGATAGTTCTTCTCTTTCTTCATCGTTGAA TTCTTCTCTCAGCTCTTTTTGAAGTTGCCTTTTCTGTTGTTGATCTTcca tttgtttttgttgttgttgtggaacttcttgttgctgttgttctatcAGG TCTTGTTCAAGAGCTTCTGTTTTCAATTTGTGATGGCTTTGCTGTGGGCT TTTTTCATGTTGTTTTAATATTCCCTGTGGTAGTTCTTGTGGCAGCTCTG GATATCTTTGTTGTTGTTCTGGTTGTCTTTGATGTTTTTGTGTTCCTTTT TGTTGCTGTTGATTTTGAGATAGTTGTTGTCCAGCTTGCATCAAGGTTGT GTCAACAGCCTTGTCAATCGGTTGTCTATTGCCATTGGTAAGTTTTCCCT CATTCATTTCATTGTAATTTTGGTGGGAAGTTTCCTCCTGTCCAGCAGTT CGATCATTGTATCCAAAGTTTTCTGATATGAAGGTTTTCTGGTAACCTTT GGAGTTCATTGTTCCCCTGTTGACCAATAGGAGAAGATCTTTAGATACTG ACACTCCTCTTTTGGTTTCTGGCTTCTGGCAACCATACCAGCGACGGTAC GGACATTTTGGTGTGCTTTTTATAATATTGAGTGGCGTATTATGAACTAA CATCCAATAAAGGGATAATATCAGAATGCTTTTTAATGACATAGCCTTGT TTTCTCTTATCAcgtttttatattatttttgttCCTTATCTTCGATTAAG TATCTTGTTGTTGTCGATGGGtgttattttcttcttcttcttcgccAAGT TAAATAAGAGTTCTATAGTGGCTGCCTTTTTATCTTATCAAAGATGTAAC TCTTCCTTTTTAACCAATACACAATCAAGTTgaatgttttcttcttttct tgacACACAAAGTCTTGTTTTATTTGCTTCGCATGGGAATTTACCCGAAT GACGGTTAGAAAAAGATACCTCAATACATTGATTTTC

Coding sequence (CDS) from alignment at scaffold_64:12614..13950

>TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_64:12614..13950 (Clytia hemisphaerica)
TTACTTTACTAAGTTGTTTTCGACATCAGTTCTGTCCTCATAATTTCTTC
GGTCTTTGAATCTGTGTTCATTTTCCCACTGTTTCTTAAGGGACAGTAAG
AGAGCCATATTTTGAAATTCCTTTGGTAACGTCACCATTTGTGATTCTTG
GCCAGTTTCTCGAAGCTGCGATAGTTCTTCTCTTTCTTCATCGTTGAATT
CTTCTCTCAGCTCTTTTTGAAGTTGCCTTTTCTGTTGTTGATCTTccatt
tgtttttgttgttgttgtggaacttcttgttgctgttgttctatcAGGTC
TTGTTCAAGAGCTTCTGTTTTCAATTTGTGATGGCTTTGCTGTGGGCTTT
TTTCATGTTGTTTTAATATTCCCTGTGGTAGTTCTTGTGGCAGCTCTGGA
TATCTTTGTTGTTGTTCTGGTTGTCTTTGATGTTTTTGTGTTCCTTTTTG
TTGCTGTTGATTTTGAGATAGTTGTTGTCCAGCTTGCATCAAGGTTGTGT
CAACAGCCTTGTCAATCGGTTGTCTATTGCCATTGGTAAGTTTTCCCTCA
TTCATTTCATTGTAATTTTGGTGGGAAGTTTCCTCCTGTCCAGCAGTTCG
ATCATTGTATCCAAAGTTTTCTGATATGAAGGTTTTCTGGTAACCTTTGG
AGTTCATTGTTCCCCTGTTGACCAATAGGAGAAGATCTTTAGATACTGAC
ACTCCTCTTTTGGTTTCTGGCTTCTGGCAACCATACCAGCGACGGTACGG
ACATTTTGGTGTGCTTTTTATAATATTGAGTGGCGTATTATGAACTAACA
TCCAATAAAGGGATAATATCAGAATGCTTTTTAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044629XLOC_044629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071891-proteinTCONS_00071891-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071891-exon-scaffold_64-1491911889:12614..13950TCONS_00071891-exon-scaffold_64-1491911889:12614..13950Clytia hemisphaericaexon
TCONS_00071891-exon-scaffold_64-1510915933:12614..13950TCONS_00071891-exon-scaffold_64-1510915933:12614..13950Clytia hemisphaericaexon
TCONS_00071891-exon-scaffold_64-1575043694:12614..13950TCONS_00071891-exon-scaffold_64-1575043694:12614..13950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:12614..13950 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.251615 0.368047 1.2464 1.42845 0.169659 0.134066 14.1123 13.6282 10.6016 13.0333 14.403 8.08546 0.0209177 0.130339 0 0 0.590271 1.11322 0.0334341 0.104959 9.21407 9.87856 4.21927 10.9832 2.05988 1.35619 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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