Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=transcript|length=1337bp
GAAAATCAATGTATTGAGGTATCTTTTTCTAACCGTCATTCGGGTAAATT
CCCATGCGAAGCAAATAAAACAAGACTTTGTGTgtcaagaaaagaagaaa
acattcAACTTGATTGTGTATTGGTTAAAAAGGAAGAGTTACATCTTTGA
TAAGATAAAAAGGCAGCCACTATAGAACTCTTATTTAACTTggcgaagaa
gaagaagaaaataacaCCCATCGACAACAACAAGATACTTAATCGAAGAT
AAGGaacaaaaataatataaaaacgTGATAAGAGAAAACAAGGCTATGTC
ATTAAAAAGCATTCTGATATTATCCCTTTATTGGATGTTAGTTCATAATA
CGCCACTCAATATTATAAAAAGCACACCAAAATGTCCGTACCGTCGCTGG
TATGGTTGCCAGAAGCCAGAAACCAAAAGAGGAGTGTCAGTATCTAAAGA
TCTTCTCCTATTGGTCAACAGGGGAACAATGAACTCCAAAGGTTACCAGA
AAACCTTCATATCAGAAAACTTTGGATACAATGATCGAACTGCTGGACAG
GAGGAAACTTCCCACCAAAATTACAATGAAATGAATGAGGGAAAACTTAC
CAATGGCAATAGACAACCGATTGACAAGGCTGTTGACACAACCTTGATGC
AAGCTGGACAACAACTATCTCAAAATCAACAGCAACAAAAAGGAACACAA
AAACATCAAAGACAACCAGAACAACAACAAAGATATCCAGAGCTGCCACA
AGAACTACCACAGGGAATATTAAAACAACATGAAAAAAGCCCACAGCAAA
GCCATCACAAATTGAAAACAGAAGCTCTTGAACAAGACCTgatagaacaa
cagcaacaagaagttccacaacaacaacaaaaacaaatggAAGATCAACA
ACAGAAAAGGCAACTTCAAAAAGAGCTGAGAGAAGAATTCAACGATGAAG
AAAGAGAAGAACTATCGCAGCTTCGAGAAACTGGCCAAGAATCACAAATG
GTGACGTTACCAAAGGAATTTCAAAATATGGCTCTCTTACTGTCCCTTAA
GAAACAGTGGGAAAATGAACACAGATTCAAAGACCGAAGAAATTATGAGG
ACAGAACTGATGTCGAAAACAACTTAGTAAAGTAAACAATCTCTGCTAAG
ATCAATAtttattatcaattttatcgaaaGATTTGGGATTTTTCCTAATT
TCATCGTTATTTTTTTCCATACACCGTTATTCtattttacagcaaaaatg
agaatcagaatcaattttgaatttttttgtcaaaccTCTATTCCTCAAAG
TATTTAATAAACGCTTCATTCAATAATGATCTCCAAT Run BLAST on NCBI protein sequence of TCONS_00071891-protein >TCONS_00071891-protein ID=TCONS_00071891-protein|Name=TCONS_00071891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MSLKSILILSLYWMLVHNTPLNIIKSTPKCPYRRWYGCQKPETKRGVSVS
KDLLLLVNRGTMNSKGYQKTFISENFGYNDRTAGQEETSHQNYNEMNEGK
LTNGNRQPIDKAVDTTLMQAGQQLSQNQQQQKGTQKHQRQPEQQQRYPEL
PQELPQGILKQHEKSPQQSHHKLKTEALEQDLIEQQQQEVPQQQQKQMED
QQQKRQLQKELREEFNDEEREELSQLRETGQESQMVTLPKEFQNMALLLS
LKKQWENEHRFKDRRNYEDRTDVENNLVK Run BLAST on NCBI transcript from alignment at scaffold_64:12614..13950 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=transcript|length=1337bp|location=Sequence derived from alignment at scaffold_64:12614..13950 (Clytia hemisphaerica)
ATTGGAGATCATTATTGAATGAAGCGTTTATTAAATACTTTGAGGAATAG
Aggtttgacaaaaaaattcaaaattgattctgattctcatttttgctgta
aaataGAATAACGGTGTATGGAAAAAAATAACGATGAAATTAGGAAAAAT
CCCAAATCtttcgataaaattgataataaaTATTGATCTTAGCAGAGATT
GTTTACTTTACTAAGTTGTTTTCGACATCAGTTCTGTCCTCATAATTTCT
TCGGTCTTTGAATCTGTGTTCATTTTCCCACTGTTTCTTAAGGGACAGTA
AGAGAGCCATATTTTGAAATTCCTTTGGTAACGTCACCATTTGTGATTCT
TGGCCAGTTTCTCGAAGCTGCGATAGTTCTTCTCTTTCTTCATCGTTGAA
TTCTTCTCTCAGCTCTTTTTGAAGTTGCCTTTTCTGTTGTTGATCTTcca
tttgtttttgttgttgttgtggaacttcttgttgctgttgttctatcAGG
TCTTGTTCAAGAGCTTCTGTTTTCAATTTGTGATGGCTTTGCTGTGGGCT
TTTTTCATGTTGTTTTAATATTCCCTGTGGTAGTTCTTGTGGCAGCTCTG
GATATCTTTGTTGTTGTTCTGGTTGTCTTTGATGTTTTTGTGTTCCTTTT
TGTTGCTGTTGATTTTGAGATAGTTGTTGTCCAGCTTGCATCAAGGTTGT
GTCAACAGCCTTGTCAATCGGTTGTCTATTGCCATTGGTAAGTTTTCCCT
CATTCATTTCATTGTAATTTTGGTGGGAAGTTTCCTCCTGTCCAGCAGTT
CGATCATTGTATCCAAAGTTTTCTGATATGAAGGTTTTCTGGTAACCTTT
GGAGTTCATTGTTCCCCTGTTGACCAATAGGAGAAGATCTTTAGATACTG
ACACTCCTCTTTTGGTTTCTGGCTTCTGGCAACCATACCAGCGACGGTAC
GGACATTTTGGTGTGCTTTTTATAATATTGAGTGGCGTATTATGAACTAA
CATCCAATAAAGGGATAATATCAGAATGCTTTTTAATGACATAGCCTTGT
TTTCTCTTATCAcgtttttatattatttttgttCCTTATCTTCGATTAAG
TATCTTGTTGTTGTCGATGGGtgttattttcttcttcttcttcgccAAGT
TAAATAAGAGTTCTATAGTGGCTGCCTTTTTATCTTATCAAAGATGTAAC
TCTTCCTTTTTAACCAATACACAATCAAGTTgaatgttttcttcttttct
tgacACACAAAGTCTTGTTTTATTTGCTTCGCATGGGAATTTACCCGAAT
GACGGTTAGAAAAAGATACCTCAATACATTGATTTTC Coding sequence (CDS) from alignment at scaffold_64:12614..13950 >TCONS_00071891 ID=TCONS_00071891|Name=TCONS_00071891|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_64:12614..13950 (Clytia hemisphaerica)
TTACTTTACTAAGTTGTTTTCGACATCAGTTCTGTCCTCATAATTTCTTC
GGTCTTTGAATCTGTGTTCATTTTCCCACTGTTTCTTAAGGGACAGTAAG
AGAGCCATATTTTGAAATTCCTTTGGTAACGTCACCATTTGTGATTCTTG
GCCAGTTTCTCGAAGCTGCGATAGTTCTTCTCTTTCTTCATCGTTGAATT
CTTCTCTCAGCTCTTTTTGAAGTTGCCTTTTCTGTTGTTGATCTTccatt
tgtttttgttgttgttgtggaacttcttgttgctgttgttctatcAGGTC
TTGTTCAAGAGCTTCTGTTTTCAATTTGTGATGGCTTTGCTGTGGGCTTT
TTTCATGTTGTTTTAATATTCCCTGTGGTAGTTCTTGTGGCAGCTCTGGA
TATCTTTGTTGTTGTTCTGGTTGTCTTTGATGTTTTTGTGTTCCTTTTTG
TTGCTGTTGATTTTGAGATAGTTGTTGTCCAGCTTGCATCAAGGTTGTGT
CAACAGCCTTGTCAATCGGTTGTCTATTGCCATTGGTAAGTTTTCCCTCA
TTCATTTCATTGTAATTTTGGTGGGAAGTTTCCTCCTGTCCAGCAGTTCG
ATCATTGTATCCAAAGTTTTCTGATATGAAGGTTTTCTGGTAACCTTTGG
AGTTCATTGTTCCCCTGTTGACCAATAGGAGAAGATCTTTAGATACTGAC
ACTCCTCTTTTGGTTTCTGGCTTCTGGCAACCATACCAGCGACGGTACGG
ACATTTTGGTGTGCTTTTTATAATATTGAGTGGCGTATTATGAACTAACA
TCCAATAAAGGGATAATATCAGAATGCTTTTTAATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071891-exon-scaffold_64-1491911889:12614..13950 | TCONS_00071891-exon-scaffold_64-1491911889:12614..13950 | Clytia hemisphaerica | exon |
| TCONS_00071891-exon-scaffold_64-1510915933:12614..13950 | TCONS_00071891-exon-scaffold_64-1510915933:12614..13950 | Clytia hemisphaerica | exon |
| TCONS_00071891-exon-scaffold_64-1575043694:12614..13950 | TCONS_00071891-exon-scaffold_64-1575043694:12614..13950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:12614..13950 . |
Blast
The following BLAST results are available for this feature:
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