TCONS_00071888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071888
Unique NameTCONS_00071888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071888 ID=TCONS_00071888|Name=TCONS_00071888|organism=Clytia hemisphaerica|type=transcript|length=642bp
CTTGAAGTGTGTATTCCCCTTTCAGAACTCGCAAAGTGATGCCGCATCTG
GCCCTTCTGAACCAACATTGAACCGTGAAGAATTTATGCATAACAATGAA
TGCCTATTGGATGTTGCACGTGAATCTAAGCCGACAAAATACACATTGAA
ATTGGCCAGAATACTTTGGAGTGAAGATGAACGTCAAAATGAGATAATCG
AACCAGGGAAGTCGACGTATACTGGGAATCAGCTCAACGGTCAACGCCTG
TATTTGTTAAAACGACTTCTTGCTCATCACTATCCCcacaacaaagaaaa
aacctGGCGTCAATGTAGAGAGTCGATCAACCAGGTAGGGCGAGATTTGA
AGGCAAAAATGAGGAGGGAGCGTAATGCCAACCaaactcaacaacaacaa
caacagccaGATGATCAAGCCAAAGCGTCCTCCTCGGAATCTGAAGATGa
tgtttgattaatttttggacctacctccgggtaccccggtggaggttcta
taaattaacccatgtccgttcgtctgttcgttcgtccgttcgtccgtccg
tccgtctgttaccagcttttctcaagattggctcattagttttttctgat
tttttgcacaatgatgcaaaatcgcaatgcccagaacgtgac
Run BLAST on NCBI

protein sequence of TCONS_00071888-protein

>TCONS_00071888-protein ID=TCONS_00071888-protein|Name=TCONS_00071888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
LKCVFPFQNSQSDAASGPSEPTLNREEFMHNNECLLDVARESKPTKYTLK
LARILWSEDERQNEIIEPGKSTYTGNQLNGQRLYLLKRLLAHHYPHNKEK
TWRQCRESINQVGRDLKAKMRRERNANQTQQQQQQPDDQAKASSSESEDD
V
Run BLAST on NCBI

transcript from alignment at scaffold_64:337975..339339-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071888 ID=TCONS_00071888|Name=TCONS_00071888|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at scaffold_64:337975..339339- (Clytia hemisphaerica)
CTTGAAGTGTGTATTCCCCTTTCAGAACTCGCAAAGTGATGCCGCATCTG
GCCCTTCTGAACCAACATTGAACCGTGAAGAATTTGTAAGTATTCCTATG
GNAGCCCTTCTGAACCAACATTAAACCGTGAAGAATTTGTAAGTATTCCT
ATGGTTTTAAATATTCTTAATAATAAGTTGAATCACATAGTGTGGTAGAG
TCTTCCAAAAATCATCAAATGGGAGGGGTAGAGAAAAAATGCTTTTTAAA
GGGAGGGGTAGGCAGGCAACTTTGAGAAGTTATAATCACTTCATGGTGCA
GGTTATTTTTCAAATTACATATAATTTCTTACATAATCAGCAGTTTTTGC
AAGTAATGTAATCTTTTCTTTCACACGTGATACCTGACCATGATGCATCA
TTCTATCACTTTTTCTGATCTAGCTGCCTGTGAGTGATACCCAAAATCCT
GGGGGTTGATAGGTTTCACAAAAAGGGAGATACCCATCAAGGGAGGGGTA
GAGACCCCTCTGCACACTATAAATCAAGTTTTGTTTTTCATCTTAGTAAT
TTCAATTTACAAATCACGCCACCCTCCAAGTTTGCAATGAAATTTACTTT
CATTACCGTGTAACCATTTTTTTTACAGATGCATAACAATGAATGCCTAT
TGGATGTTGCACGTGAATCTAAGCCGACAAAATACACATTGAAATTGGCC
AGAATACTTTGGAGTGAAGATGAACGTCAAAATGAGATAATCGAACCAGG
GAAGTCGACGTATACTGGGAATCAGCTCAACGGTCAACGCCTGTATTTGT
TAAAACGTAAGTTTTCATGACTTAAAATTAATCATGGCTAATATTGGAAC
TGAAGCTTATTTATCACCAATACAATGTTTGATCTAAATGTGGTCAAACA
TTGAATAAAATTTGAAAATGTTTTAATATTTTGAATTTCATTTTTTGAAA
TTTAAGTTTTGCCGTACTTAATTCTCATCTTCACAGGACTTCTTGCTCAT
CACTATCCCCACAACAAAGAAAAAACCTGGCGTCAATGTAGAGAGTCGAT
CAACCAGGTAGGGCGAGATTTGAAGGCAAAAATGAGGAGGGAGCGTAATG
CCAACCAAACTCAACAACAACAACAACAGCCAGATGATCAAGCCAAAGCG
TCCTCCTCGGAATCTGAAGATGATGTTTGATTAATTTTTGGACCTACCTC
CGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCTGT
TCGTTCGTCCGTTCGTCCGTCCGTCCGTCTGTTACCAGCTTTTCTCAAGA
TTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATCGCAA
TGCCCAGAACGTGAC

Coding sequence (CDS) from alignment at scaffold_64:337975..339339-

>TCONS_00071888 ID=TCONS_00071888|Name=TCONS_00071888|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_64:337975..339339- (Clytia hemisphaerica)
GACTTCTTGCTCATCACTATCCCCACAACAAAGAAAAAACCTGGCGTCAA
TGTAGAGAGTCGATCAACCAGGTAGGGCGAGATTTGAAGGCAAAAATGAG
GAGGGAGCGTAATGCCAACCAAACTCAACAACAACAACAACAGCCAGATG
ATCAAGCCAAAGCGTCCTCCTCGGAATCTGAAGATGATGTTTGAATGCAT
AACAATGAATGCCTATTGGATGTTGCACGTGAATCTAAGCCGACAAAATA
CACATTGAAATTGGCCAGAATACTTTGGAGTGAAGATGAACGTCAAAATG
AGATAATCGAACCAGGGAAGTCGACGTATACTGGGAATCAGCTCAACGGT
CAACGCCTGTATTTGTTAAAACTTGAAGTGTGTATTCCCCTTTCAGAACT
CGCAAAGTGATGCCGCATCTGGCCCTTCTGAACCAACATTGAACCGTGAA
GAATTTGACTTCTTGCTCATCACTATCCCCACAACAAAGAAAAAACCTGG
CGTCAATGTAGAGAGTCGATCAACCAGGTAGGGCGAGATTTGAAGGCAAA
AATGAGGAGGGAGCGTAATGCCAACCAAACTCAACAACAACAACAACAGC
CAGATGATCAAGCCAAAGCGTCCTCCTCGGAATCTGAAGATGATGTTTGA
ATGCATAACAATGAATGCCTATTGGATGTTGCACGTGAATCTAAGCCGAC
AAAATACACATTGAAATTGGCCAGAATACTTTGGAGTGAAGATGAACGTC
AAAATGAGATAATCGAACCAGGGAAGTCGACGTATACTGGGAATCAGCTC
AACGGTCAACGCCTGTATTTGTTAAAACTTGAAGTGTGTATTCCCCTTTC
AGAACTCGCAAAGTGATGCCGCATCTGGCCCTTCTGAACCAACATTGAAC
CGTGAAGAATTTGACTTCTTGCTCATCACTATCCCCACAACAAAGAAAAA
ACCTGGCGTCAATGTAGAGAGTCGATCAACCAGGTAGGGCGAGATTTGAA
GGCAAAAATGAGGAGGGAGCGTAATGCCAACCAAACTCAACAACAACAAC
AACAGCCAGATGATCAAGCCAAAGCGTCCTCCTCGGAATCTGAAGATGAT
GTTTGAATGCATAACAATGAATGCCTATTGGATGTTGCACGTGAATCTAA
GCCGACAAAATACACATTGAAATTGGCCAGAATACTTTGGAGTGAAGATG
AACGTCAAAATGAGATAATCGAACCAGGGAAGTCGACGTATACTGGGAAT
CAGCTCAACGGTCAACGCCTGTATTTGTTAAAACTTGAAGTGTGTATTCC
CCTTTCAGAACTCGCAAAGTGATGCCGCATCTGGCCCTTCTGAACCAACA
TTGAACCGTGAAGAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044626XLOC_044626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071888-proteinTCONS_00071888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071888-exon-scaffold_64-1575043694:339255..339339TCONS_00071888-exon-scaffold_64-1575043694:339255..339339Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1575043694:338534..338711TCONS_00071888-exon-scaffold_64-1575043694:338534..338711Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1575043694:337975..338353TCONS_00071888-exon-scaffold_64-1575043694:337975..338353Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1510915933:339255..339339TCONS_00071888-exon-scaffold_64-1510915933:339255..339339Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1510915933:338534..338711TCONS_00071888-exon-scaffold_64-1510915933:338534..338711Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1510915933:337975..338353TCONS_00071888-exon-scaffold_64-1510915933:337975..338353Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1491911889:339255..339339TCONS_00071888-exon-scaffold_64-1491911889:339255..339339Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1491911889:338534..338711TCONS_00071888-exon-scaffold_64-1491911889:338534..338711Clytia hemisphaericaexon
TCONS_00071888-exon-scaffold_64-1491911889:337975..338353TCONS_00071888-exon-scaffold_64-1491911889:337975..338353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:337975..339339 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.420366 tpm) - - (5.46511 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09838	1.22579	3.03728	3.15561	4.65469	1.72104	3.02845	4.67741	1.4944	1.56115	2.0858	1.59968	0.645268	1.64393	1.6549	1.30033	0.420366	0.631488	0.778771	0.772505	1.18596	1.42144	0.526174	0.965324	0.717791	0.885266	4.6485	5.46511	3.18383	3.59589
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Sequence
Match NameE-valueIdentityDescription
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