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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071885 ID=TCONS_00071885|Name=TCONS_00071885|organism=Clytia hemisphaerica|type=transcript|length=1036bp
AATGGATTTAAACCACCAGGGAGGAAATACTCACCATGAAAATCAACTTC
CATGCTACTTTGACCTTGAACAGGCATTTCTACGTCGAAAGAATCAGTTT
CCATTGGTATATCTGTGTCTATGAGGGCCGATTCGGGAGCCGGTGATTCC
GTTGGTAACATCACTTCTTCGGTACCTGGTTCTTGAAGGATTTCACTATC
AGCTGATTGGTTCGGGTCCATTGGAAGTGGTTCTTGCCCGTCTTCAAGCT
GCATTGGTGGTTCGGATGAAGGTACAACTGGCTCTTCTGGAGGCGCTGGT
GGAAGACTAAAcaggatggaaaaaataGATAGTGTGATGCCAAGGAAAGA
AAGCCTGAAAACAATGAAGAACAATTTACCACTTGTGCTTCTGGGATATC
TGTAATTCCATTGGTTGAGCGTGGACAGCTAAAATATAAAAGACGAAAAT
CTTAAATATAAATTTAGAATTATAAAGGAaaactattttttatttattaa
tgTATTGTAGATTataatgatttctttttaaagaatttgtttaaagttaa
agtttgaaaataataaagtaaaagtGACAGCAAAATAATGCATCCCTTAA
CCTGCTACTATTTCCATTTGATTTTCGCGTATTTTTTCGAGGTCGACCAG
AGCCCATTGAATCTTCTGTCATTTCTTTAGTCTatacaaaagaaaatgaa
aaattgaaagatgatAAACTCAGTATACTTATATACTTGTACCTATTCAA
ATAGGCTATCAGTAAAATTATGTATGCaaacaaattttgatagaatttga
gcTAGATTGTGATTTGGTACTTGTTGAAAAGATGGCATATGGAGGAGAGG
GATATGTATCAtgtaaaaagattttcgaaacAAAGAACATAACAACTCAt
aaatgaagtaaaaaaaagaagaaaactaaTTCTGGTAGAACCATGGCAAA
GTTATTATTGTTACCATTTTTTGTATCAGTAGTTATCTCAAATCTTAGAA
AATTATCACAGTTGATTGATACGAGTGAAATGGCTG Run BLAST on NCBI transcript from alignment at scaffold_64:231399..240860- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071885 ID=TCONS_00071885|Name=TCONS_00071885|organism=Clytia hemisphaerica|type=transcript|length=9462bp|location=Sequence derived from alignment at scaffold_64:231399..240860- (Clytia hemisphaerica)
AATGGATTTAAACCACCAGGGAGGAAATACTCACCATGAAAATCAACTTC
CATGCTACTTTGACCTTGAACAGGCATTTCTACGTCGAAAGAATCAGTTT
CCATTGGTATATCTGTGTCTATGAGGGCCGATTCGGGAGCCGGTGATTCC
GTTGGTAACATCACTTCTTCGGTACCTGGTTCTTGAAGGATTTCACTATC
AGCTGATTGGTTCGGGTCCATTGGAAGTGGTTCTTGCCCGTCTTCAAGCT
GCATTGGTGGTTCGGATGAAGGTACAACTGGCTCTTCTGGAGGCGCTGGT
GGAAGACTAAACAGGATGGAAAAAATAGTAAGTCGATTTTAGATTTCACT
AAATCAGCTTTATCTTTGAAACCGTTAATTTACCTCATATTTTGTTTTCG
TTTTTATAAATCTAGCTCGGCGAAAAGTTAAAACACCATGAGCCGAGCAC
ATATAATATAAATATAAAACAAATCCTTCATGTAGACAAAAATTCTAAAA
AGCAGTCTCAAAGGAATTATGCTAAGGTAAGCAAACCTTAATGATAAGTC
AGTTGGATCGGGAACGGAGGGTCCAGTGAAGAAAGAGGCCATCAATTTAG
CATCACGCTTTCGTCGTTTTTCTTTCTTTTCTTTCTTTGGACGTTTCTTT
TTCCCCTCTTGGATGTACTCAAGTTCCAAGTGCAAATGTCTTTCCAATAA
GTTGACGCCGAAAAACTCGAACTGAATGAAATGAATAAGAAAAGTTAGGC
ATTGGTGATGAATGATTTAAGGCTATGGGCAGAGTTTACATGATGCCTTT
TCTCAAAACAAATTGATCAGAAATGGCATTGAATAAGATAGGAACGTAAA
GTGTAGAACATTAATTCGACTCTACAAACCAGAAGAGCTTACGTGCTTTA
CAAGCTCGTTTTTCAATTCTTTAGATGTATATATGGTGAAGATCAGAGAT
CTGATCTCAAGGAGAGAAAGTGTTGAAAATACTAAATAAAATAAAGATGA
AACATAAAAAGGCACTAATATTTTTATAATTATACGTTTTTTTTTGTTGT
TTTTTTGTTTTTTTTTGAGTTTTATATGTAAAACTTTTTAAAACTTGGGA
AAGGCGTGAATTATATCAAGAATTGTGCTGAAGAAGAAGAACCCAAGAGC
GAAGATAACACTACATGTTTTTTCTTTTATAAGCATAACGTTTATAAGCA
TATGCAGGCTCAGTTTTTGGTACCTAAACAATGGCTCTATTGTTCGAGAA
CAATAGAATGCTAAGCATAATGTGAGCCTGATGTAGGGGCAGACACTTGC
TTATAAAAAAAAACAACATGTATTCCTAATCGTACAGTGGCAAAAGCAAA
GTTCTCCATGGGAGACAGAAAATGGATTTTGCACAGCAAATAAGAACATA
ATTATTGTGAATTAAATCATTAAGAATTTCAAGACGGAAAAGCCTCTTTA
TATAATTCAATGAGACAGTAGAATAGCTATCATAAACACAGGGGAAGTTA
CTTACCGGATCGGTAGCATCTTCCGGATCAATATCATAATCATCCAACAA
CAACTCATCCGTTTCCGCCGTTGTATCCGGTGCAATCATCTCCATATCGT
CCTCTTGTTTGACCTGCTCCGGTGACATTATGTCCGGTTCTGCAGTACCT
AACAACGGCTCTGACGACGGGATAGCGCCATCCAAAAGGTCTTGAGAACC
TTCGATAGGCTCTGGTAACGTTTCAGAGGGCGGGGCTAAAGGCATATCTG
GTTTATCCACAGATTGCTCGTCTTGGTTCTCGATGATTGCTTGATTACTT
TCATCAGCAATGCTCGCTTGGTTACTTTCTTCAGTTAGCGTGGCTACAAA
TAGATTCTTCTCCTCCTTCCTCCGTCTTGCACGAGTGCTACGAATGTGTG
GTGCACGTATAACAAGACTTTTGATTTGTTTTAAACCGTTTTCTGTTAAG
TGGAGTCGCTCTTTCAAAGTATCATCACAACGTAATTTACTACGCATCAT
GTTCAAGTCAATATCAACTACACCACTATCGTCACGTACGGCGTTTTGCG
GTACTAGCGGTAACGCATCTTCGGCCGCACGTTTCTGTTCCCGTAACGCC
GCCTTTGCCATCTTATCCAATTTGACATCTTTTAAAGTCTTCGTTTTCTT
AGGTTTCTCGTTTTTATCGCTGCTATTTAAGGCTTTTCGTATGCTGACTT
TAGTTATGACACTTGATTTGAGGCTACTGTAGATACCAAGGTGTTTGGTC
TTTGGTCGGCAATGAACGCAATGGTAGGTCATGGTGCAAGCCAGTTTGGC
ATCAGATTCTGAATTCAAACCGTCACATTCTGCATGTGCCCACCTGAAAA
TGATTGATGGTAAAATCTTTATTTGTAAGATTGCTTGATGAAAGCCAACT
CGTAAGTATTTTAAAATAAAAAGACTGATAGGTGATAAAATAATTTGAAG
GACATTTCAATATTGTATCGGTACGGTCAGGTTGGTCAAGTTACCGTTAA
AACCCTAACAACCGTAACAACCCAAAGGTCCGCTCAGCAACCAAATCACT
TTACTATAATTTTGAGATTGTTCAAGGTAACTACAGCAATGAATTTCAAA
GTGATCGAAAACAAGTGCTACCACAGNTGCTATTTAAGGCTTTTCGTATG
CTGACTTTAGTTATGACACTTGATTTGAGGCTACTGTAGATACCAAGGTG
TTTGGTCTTTGGTCGGCAATGAACGCAATGGTAGGTCATGGTGCAAGCCA
GTTTGGCATCAGATTCTGAATTCAAACCGTCACATTCTGCATGTGCCCAC
CTGAAAATGATTGATGGTAAAATCTTTATTTGTAAGATTGCTTGATGAAA
GCCAACTCGTAAGTATTTTAAAATAAAAAGACTGATAGGTGATAAAACAA
TTTGAAGGACATTTCAATATTGTATCGGTACGGTCAGGTTGGTCAAGTTA
CCGTTAAAACCTTAACAACCGTAACAACCCAAAGGTCTGCTCAGCAACCA
AATCACTTTACTATAATTTTGAGATTATTCAAGGTAAATACAGCAATGAA
TTTCAAAGTGATCGAAAACAAGTGCTACCACAGGAAAGTTTTAATAACTG
AAATTCAAGGCTCAAATGAGAAAGACATGAGAATTTATACCTGTCACACT
TTTCGCATTGTATTACCAAATTATTGGGCTCGTAAGGATATGAGCAAATA
GAGCAATACTGTTCACTGGAGCATTGTCCACATTGACTGTAATTGCCCAT
CCAAGAACAACCGTAGCCTGGCTCCTTAACACCACAATCCTCACAAACTG
CACACCTATCAAACACAAAAAGAAATGTTCTTATAACGTTTTTGGTTAGA
CTTAAAGATGACGTCTCTCCTTTTTGATAAAAAACTAAAAAGGTCCAAGA
ACTTTAATTGTGGTATGATTTGGACGATACAACACAACCTATACAAAATA
AAATAATCTAAAGATTATCGCGTAGAAAACTATCCAGACATTTAGCATGT
ACAAAATAGGTGAATAATTTATAAAAGAATACCATTGGCACTTCCATCCT
CCAACAGGTACTTCTTCCAGAGGCGGTTGTAGACAATAAGTGTGAAAACT
GACATCACAAATATCACAAAGGAGTAGATGAGCCTCATCAGCATTTAGAC
CGCAACCTTCACATACTGTGCAATCGATGCACCTCCAACCACGACTCAAT
ATCACCTCGTTTACCTAGAAGAGGAAGAAAAGAGAATAGTAGCCAGCAAT
GAGTTTATCATCGAAGCATCTTTGACAAGAAGTTGAAGGAATTCCCAGTT
TAATTCTTTGAAAATGACCAAAAAGTCCTAGATTAGTAAGATGTCGTTGC
AACATCTACTCAAATTTATTTATAATTTAAAAATTCATGAACACCTTACG
ATAATATTATCACAATAAATAAAGTATGATTAAAATACACTACACGATTG
GATTGAAGAATTCTGAAGAATAACAAAACATACCTTTACATTAACACAAT
ATGGATGAAAGCATTGTCCACACTGCACACAACCGATGAGGTAACCTTCA
CGCCCTTTACCAAAGCTACCACAACACATGCACACATCTTGTTTCAGTGT
AAACTCATCTTTATTAGAGACAATGAGTACAGTAGAGTGTAAACCGTCTT
CATTATCTTCCTCTGTTTCTTCGAAGTCATCTTCATCTTCTTCTTCACCC
TCTTCACTCAAAATGCTGATGCTCTCTGGTGCTTCCTTTGTGGAAGAGGA
TGCAGTAAGGTTTGATGTCGAGTCTGGTAGCTATAGAAACGATGGGAAAG
TTTGTTTTTTTATTGATTGTCGAAAAAAGTTATTCCATCAAAATTCATGC
ATGATTTTACACGATCAAAAAAACTTTTTGACAACTTTTAACTTTGAACA
GATTTGAAAATTGAGGTAAAAAGTAAAAAATACCTCATCAATTTGGATCA
CAATTGGTTTTTCTTTTTCAAATTGGGTTACACTCTCAATGCTTCCATTA
CGGTTTCGTTTTTTTCCTCTGCCAGGTTTCTATAGAAAAATAGGAAAAAC
TGAATAAGAGATTAAAGTTCAAATCTTCTTCAGAAAACCTCTCGAGCTGC
TGCTGTGCTAAACAAAAGACTAAATTTAACAAGTCTATTGAAATAACTCA
CGTGTAGACGTCTTGATTTGGTGNACTAAATTTAACAAGTCTATTGAAAT
AACTCACGTGTAGACGCCTTGATTTGGTGGGACCTTTCCGATTAACCATA
GGGAAGAAATTGCTGTTTGACGGTTCAGCCAGGGATTCACTCATCACACT
ACTGTAGGGAGAATCCACGGTAGATTCGCTGTATTTTTCACTTTCAAACT
GTTCAAAATCGTCCTGCGGAAGGTTATTTTGGAGGTGTGGACTGTTATTA
TTGTTAGCTTGACACGATTCAATGAAGTCTTGAGAAGCAGCCATTGAGAA
AAGCTCAGCTTCCTCCAAAGTCAATTTCTTTTGACCAGATGCAAGAAGAT
CGTAATCATAAGAGTCATTTGTCTGTAAAAGGAAGCATAAATTAGCATAA
ATTAGCACAAATTAGCATAAATTTAGCAGCTCTATAAATTAGCACAGGCC
ACTGAATATAAGAATGTTGTGAGGCATTCTCCAAGTAATCAGGATAAAAC
AACAATAACAGAGAATAAGTGATTCACATTCCACTAAAGCTCCATGCCAG
CTTCAGCATTGTCAAATTCCGCAACGTTGTTAAATTTAGCTAAACTTGAC
AATGCTTGTCTTTGAACCAAGAACAGGGTCGCAGGGTATCGAACCTAAAT
GTTAGCGCATTACTGTGGAATCATTGCAAAAGCCGCAAACCTGAGGAATT
TTGCAGCACTTTGCTATTTAACTTTCTGAATTGATGTACTGTTAAAGTGT
TGTTAAATATACTTTTATTGATCTTCGTAATGTTTTGAGATTTAAAAGAT
GCAAAATAATAAATCAAACNAACTTTTAACTTTGAACAGATTTGAAAATT
GAGGTAAAAAGTAAAAAATACCTCATCAATTTGGATCACAATTGGTTTTT
CTTTTTCAAATTGGGTTACACTTTCAATGCTTCCATTACGGTTTCGTTTT
TTTCCTCTGCCAGGTTTCTATAGAAAAATAGGAAAAACTGAATAAGAGAT
TAAATTTCAAATCTTCTTCAGAAAACCTCTCGAGCTGCTGCTGTGCTAAA
CAAAAGACTAAATTTAACAAGTCTATTGAAATAACTCACGTGTAGACGCC
TTGATTTGGTGGGACCTTTCCGATTAACCATAGGGAAGAAATTGCTGTTT
GACGGTTCAGCCAGGGATTCACTCATCACACTACTGTAGGGAGAATCCAC
GGTAGATTCGCTGTATTTTTCACTTTCAAACTGTTCAAAATCGTCCTGCG
GAAGGTTATTTTGGAGGTGTGGACTGTTATTATTGTTAGCTTGACACGAT
TCAATGAAGTCTTGAGAAGCAGCCATTGAGAAAAGCTCAGCTTCCTCCAA
AGTCAATTTCTTTTGACCAGATGCAAGAAGATCGTAATCATAAGAGTCAT
TTGTCTGTAAAAGGAAGCATAAATTAGCATAAATTAGCACAAATTAGCAT
AAATTTAGCAGCTCTATAAATTAGCACAGGCCACTGAATATAAGAATGTT
GTGAGGCATTCTCCAAGTAATCAGGATAAAACAGTAATAACAGAGAATAA
GTGATTCACATTCCACTAAAGCTCCATGCCAGCTTCAGCATTGTCAAATT
CCGCAACGTTGTTAAATTTAATTAAACTTGACAATGCTTGTCTTTGAACC
AAGAACAGGGTCGCAGGGTATCGAACCTAAATGTTAGTGCATTACTGTGG
AATCATTGCAAAAGCCGCAAACCTGAGGAATTTTGCAGCACTTTGCTATT
CAACTTTCTGAATTGATGTACTGTTAAAGTGTTGTTAAATATAATTTTAT
TGATCTTCGTAATGTTTTGAGATTTAAAAGATGCAAAATAATAAATCGAA
CCTCGTTATTCATCATATCCTCCATCTCAACGTCTTCCATCATTGCATGG
TTTTCATTTTTCACGCATTCTACACAAATATAATTATCCTCAATACCATC
TGGGTCGCAGTCCCTGTGGACGCATTTGAAACATTGAGAGCACTGCATCA
AAATGGAAGAACTACAAAGTCTGACAGCTCGGTTACAGACAGGACAACAC
TGACCCTTCTTGCGTTGCTGGTAACATCGGTCACACAGTGAAAAATTATT
ATGCCACTTGCAAGAAGGTCCACCACCTGGCCTTGTAGAGCCACAATCTT
CACATTTACGACAGCTGATGCATTTCCAAGCAGATTTGGGAACACTGGTA
ATGGGTGGGTTCAAACAATAAGTATGGAATCCTTTATCGCAATTATCACA
GCACAACATTCGGTCTTCATCGCCTGGTTGTTTACAGCCTTGACAAAGTT
TACAATAGCTACACTGCCAACCCATCCGCACAACAGGTGTTATTGGAATG
TGCATATCCACACAGTAGCTATGGAAATGGTGACCACAACTCGTGCAAAA
GAGTTGAAGATCCAAATTATCAGTTTTCCCGCAAGCATCACAAGAAGGAT
CTGCATTAGCTAGAACAATGAAATATTTATGTATTGCATATAATCAAATT
GTTACAGTTTAAAACCAGAAAACAGAAAACTTTCTACCTTAACAACTGGC
CATTCCAGGCCGTATTACAAAAAATTTAAAGAGCCACTTACTGAGTTTTT
CAGTTCTATCCAGATGACCAGGACAAAGCAAGTTCATGCTATTTATATCT
TGGAATGCTCCAGTGCTTGCACAACAGGCATAATGGTATATTTTGGTACA
ACGGTGAACTTGACATTCTACACTTGCTCCATATCGATCACAATGGCTAC
ATTTCTGAAAAGTAGAATAATGCAATATATTTTCAATGATGTTGTTGGAT
TGCAGTTACCTTTTAATTTTAACAAAATATGCTCTTGTTCATGTTTTGAC
CCCTTATTCTATCAGGAATCTTATGGTAAAGAACTAGTGCAGTTGATTAG
ATTATGCTGTTATTATCTGCATTTCTTTCCATCGTCAGAAAGCAGAAAGT
ACCTGTTGTTCAACAAAGAAAATTAGCTACTTGTCTATACAAAGACTCCT
TATGCGCATATGCATAATTAAATCGTTAAGATTTAGAATGATTTTTCACA
AAGTATTACCTTTGTCAGAGCTTTGGCAACAGCTTTGTCTACATTTTCAA
GGTCACATGAATCATTTTGTGAGACACCTGCCGACCATGCGGCGCAACAA
TGATGTGCAAACAGATTTTTGCCTTTAGAGTCTATAATATCATTAAAATC
TTGTACATTTGCCGTCCCAAAAGTGGTCATGTCAGGAGGGAGAGTCAAGT
CAAAATCATTATCTTTTTTTCTCCTCCGTCTTTTAACAAATGATTTTTCT
TTGATATTCTTCTGGTTGTCACTGGATGAAACTTCACTGTTTATGTTTCT
GTCCATTTCTGTTTTCATTTTCTCTTTGATCTTCTTTAAAGTGCTTGATG
CCACTGGGTATTTAGTGATCTCACCGAGAATAAGGGCCATTTCTTGCCCA
CAATTGCAGAGTGCACATATTTCAGAACTTCTAGAAAAAGATGTGTAGAT
AGCAATATTAAAAAAAAAGAATTACAAGTCTGTGAATTTAAAATAGTCAA
TGCATTTTAATCTTCCGTAGTCTTTTAGAACAAGGTTTCAATCAAATTCA
ATCAAGGCTTGAATAAACCGGAATGCTTTTAGTCGGATCAAAAAATCATA
TTTCCCCGCTAAAGCAACCCTTATTCTAAATTTATAATGGGTTGAAAAAA
TTTACTAAAATTATCTTACTCTTCTGCTTTGGCTGGTGAATATGTTGCTG
CGTCAGAAGATTCTTCATTCATAATATCAGACATTGCAGTGCTCAATGGT
TCAACAATCTGAATAACAGTTTTTGATAGAAGATTTTTTTATAAAACTTT
TAAAATTGGATTTTATGATTTTTAGGACTCTAACCAGGATTTTGAAGTTC
ACCCTTAGGGTGAGGAAATGCCGGTACCCTTGATTTGCCTTAATAGCCCC
CACTCTGAGGATATCTTCTTGTTGAGTTGGTGTAATAGACATTTGATCAA
TATGATAATAGGGGCTGCAAGCAGGGAAAAAGACAACAACCAGTTCACAT
TGAGTACTAAAGAAATATTTTTTTAATGCATATTGTTTTTGTTTTGCTTT
TAGGATAGTGTGATGCCAAGGAAAGAAAGCCTGAAAACAATGAAGAACAA
TTTACCACTTGTGCTTCTGGGATATCTGTAATTCCATTGGTTGAGCGTGG
ACAGCTAAAATATAAAAGACGAAAATCTTAAATATAAATTTAGAATTATA
AAGGAAAACTATTTTTTATTTATTAATGTATTGTAGATTATAATGATTTC
TTTTTAAAGAATTTGTTTAAAGTTAAAGTTTGAAAATAATAAAGTAAAAG
TGACAGCAAAATAATGCATCCCTTAACCTGCTACTATTTCCATTTGATTT
TCGCGTATTTTTTCGAGGTCGACCAGAGCCCATTGAATCTTCTGTCATTT
CTTTAGTCTATACAAAAGAAAATGAAAAATTGAAAGATGATAAACTCAGT
ATACTTATATACTTGTACCTATTCAAATAGGCTATCAGTAAAATTATGTA
TGCAAACAAATTTTGATAGAATTTGAGCTAGATTGTGATTTGGTACTTGT
TGAAAAGATGGCATATGGAGGAGAGGGATATGTATCATGTAAAAAGATTT
TCGAAACAAAGAACATAACAACTCATAAATGAAGTAAAAAAAAGAAGAAA
ACTAATTCTGGTAGAACCATGGCAAAGTTATTATTGTTACCATTTTTTGT
ATCAGTAGTTATCTCAAATCTTAGAAAATTATCACAGTTGATTGATACGA
GTGAAATGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071885-exon-scaffold_64-1575043694:240534..240860 | TCONS_00071885-exon-scaffold_64-1575043694:240534..240860 | Clytia hemisphaerica | exon |
| TCONS_00071885-exon-scaffold_64-1575043694:231399..232107 | TCONS_00071885-exon-scaffold_64-1575043694:231399..232107 | Clytia hemisphaerica | exon |
| TCONS_00071885-exon-scaffold_64-1510915933:240534..240860 | TCONS_00071885-exon-scaffold_64-1510915933:240534..240860 | Clytia hemisphaerica | exon |
| TCONS_00071885-exon-scaffold_64-1510915933:231399..232107 | TCONS_00071885-exon-scaffold_64-1510915933:231399..232107 | Clytia hemisphaerica | exon |
| TCONS_00071885-exon-scaffold_64-1491911889:240534..240860 | TCONS_00071885-exon-scaffold_64-1491911889:240534..240860 | Clytia hemisphaerica | exon |
| TCONS_00071885-exon-scaffold_64-1491911889:231399..232107 | TCONS_00071885-exon-scaffold_64-1491911889:231399..232107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:231399..240860 - |
Blast
The following BLAST results are available for this feature:
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