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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071880 ID=TCONS_00071880|Name=TCONS_00071880|organism=Clytia hemisphaerica|type=transcript|length=1237bp
AGAAACGAAATGGTTATTTAGCAAGAGCCCTTTTCTTTATTTGCACAGAA
CTTATTTAGTGTGCATACAGTGGGCGATTTCTGTACAGTGAGGGAAGATt
ttgcttttttggaaaatagtttTTGAATGATTACAGAAAGAAGGAAGTCG
GGATGAAAAGTTTGCAATGTAAGCTTTGTTGGTCTTATGGCGTAAAGAAT
GTCATTTAAATGTAAAAGTTGGGAGGCTGAAAGATAAAATTCGCTgggaa
tttcagaaaaaaatctcataatGCTCAAAtatggggaggctgaagtctcc
ccagtctccccgcttccgccgggcctgcaCATTTAAAATTATTGCAAACT
TTCAACAGTTTCATAATAAGATTATAAAGAGTAATATTACCGTTTATCAG
ATTAAAGTGATCTCTATCGTGTTGGATTGCGGTCATAATTAGTCGTAACA
AGTTGTACACAGTTCTTGCTCTCGAACCAAAGCATAAAAAGGTAGGCTAG
TTAGACTAAGTGTAGTGTGGAGGAAGTTTTTCAAAGTCTTATGTTCTCCG
ATTACCGGTGATTACGTAATGAATAGCGCAAAAAATTGTGAAATCAAAGA
AGAGTGGGCAATATGACGTGGGCAATGATATAAGATTGATTTTTTCCCGT
TAAATTTGTAAATCACAGCAGAACACCAACACATTGCACCAATAggcttt
tttggtattttagtggaATTATGAAAGGTTTTGAGCAAACGCACGCCAAA
CTTTGAATATGTGATTTCAAAGAGTGTGCAAATTCACTACAAAAGACTGC
AACGATTCAGCTTTGATGTTCATAGACTATAGACACTGCAATATATTATA
TCTCAATATCTCAATAACTAATACTttaactacatgttttttagaCGGGA
AAAAAGGAAATATTAGAACAAACAAACAGAATCAAAAATGAGACTTCACC
cgaaagtcaaagaaaaatttccGTTCAATAAGAATGATGTGGTTCTTGCC
AAATACGACAATGAAGTATTTTATGCCAAGATTGTTTTGATCAACTATAA
ACGTGAATATGCCAAGTGTTTATTTGATGATGGCTCAAGAGAGGATATAC
CTTTCCAAAATATCTTTGATGTGAACGAAACGACGTCGGACATTATTTGT
GTGGTATGTAAAAGTGATGCTACTGAACTCAACAACGATATTGTTCTTTG
TGACAACTGTAACGTAGGTAAGAAAGAAATACTATTG Run BLAST on NCBI transcript from alignment at scaffold_64:187255..189902- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071880 ID=TCONS_00071880|Name=TCONS_00071880|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at scaffold_64:187255..189902- (Clytia hemisphaerica)
AGAAACGAAATGGTTATTTAGCAAGAGCCCTTTTCTTTATTTGCACAGAA
CTTATTTAGTGTGCATACAGTGGGCGATTTCTGTACAGTGAGGGAAGATT
TTGCTTTTTTGGAAAATAGTTTTTGAATGATTACAGAAAGAAGGAAGTCG
GGATGAAAAGTTTGCAATGTAAGCTTTGTTGGTCTTATGGCGTAAAGAAT
GTCATTTAAATGTAAAAGTTGGGAGGCTGAAAGATAAAATTCGCTGGGAA
TTTCAGAAAAAAATCTCATAATGCTCAAATATGGGGAGGCTGAAGTCTCC
CCAGTCTCCCCGCTTCCGCCGGGCCTGCACATTTAAAATTATTGCAAACT
TTCAACAGTTTCATAATAAGATTATAAAGAGTAATATTACCGTTTATCAG
ATTAAAGTGATCTCTATCGTGTTGGATTGCGGTCATAATTAGTCGTAACA
AGTTGTACACAGTTCTTGCTCTCGAACCAAAGCATAAAAAGGTAGGCTAG
TTAGACTAAGTGTAGTGTGGAGGAAGTTTTTCAAAGTCTTATGTTCTCCG
ATTACCGGTGATTACGTAATGAATAGCGCAAAAAATTGTGAAATCAAAGA
AGAGTGGGCAATATGACGTGGGCAATGATATAAGATTGATTTTTTCCCGT
TAAATTTGTAAATCACAGCAGAACACCAACACATTGCACCAATAGGCTTT
TTTGGTATTTTAGTGGAATTATGAAAGGTTTTGAGCAAACGCACGCCAAA
CTTTGAATATGTGATTTCAAAGAGTGTGCAAATTCACTACAAAAGACTGC
AACGATTCAGCTTTGATGTTCATAGACTATAGACACTGCAATATATTATA
TCTCAATATCTCAATAACTAATACTTTAACTACATGTTTTTTAGACGGGA
AAAAAGGAAATATTAGAACAAACAAACAGAATCAAAAATGAGACTTCACC
CGAAAGTCAAAGAAAAATTTCCGTTCAATAAGAATGATGTGGTTCTTGCC
AAATACGACAATGAAGTATTTTATGCCAAGATTGTTTTGATCAACTATAA
ACGTGAATATGCCAAGTGTTTATTTGATGATGGCTCAAGAGAGGATATAC
CTTTCCAAAATATCTTTGATGGTAAGCATTGATTGGTTACTAGACCCCCC
AATAAAACTAAAACTTCTCAGAATCCCTGCCGCGAAAAGTCCAAATAGAG
CCCAAACTTTGATTACAACCTTTGATTGATTAGGTATTGGTAATGCACAA
ATTAGCGACGGCTATAAAGATATGTTAGGACGTCCTGACAGGAAACCAAT
AAAAACTATCTGTATTTCCAAACCATTTTTGATGTTATAAGTATTAATTA
GTTACTAGACCCCCAATAAAACTAAAATTTCTCAGAATCCCTGTGAAAAG
TCTAAAAAGCCCAAATTTACAACCTTTGATTGGTTTGGTGATATAAATNT
TGCGGTAGATACGGACATAAGTCTTATAGACCTAAAATGATATAGAAGAC
CTAAACAGATGTATAACAAGCTAAAATAGATTATGTTTCATTTTTTTTCA
GGAGGAAAAAGAAGGATTCCAAGAGGACATTAAACCCGAGGAAGAAATTG
AAAATAAAATTGAGGAGACGAAAACCAAAAAAGATGAAATAATTACGGAT
AATCTAGTTGAAAAAAGTCAATGCGNATGTCAAAACGTCCTGACATGAAG
AAACCTAATAACAACTCAATGAATGTCGAGAACTTAAGAAACACAACAAA
ACCTTGGTTGGCCCCAACTGTCACTTCAGACTAAGGTGGTCTTGTTAAAT
CACTTTCTGGTGTCCGGGGGAAACCAGAAATTAAGCCTCAGGAATTATTT
GTTCTTGATTTAGATTACGTAGTCATAATATTTCTATCACGGTATTTGTG
TCCTTAGTAGCATTTTTTTCTACTAACATTGAAATCCAATCAATGTCTTT
TCATTTCGAAAATGTTTGACTTTAAAAGTGAGGTAACCATACAATAAAGT
ACAATAAGTTCCTCATACAATAAAGATGCCTAAACAATCCCGTTCACACA
GACTTGAAGTTGAAAACCCAATTTGTAAAAGTATGACTTAAAATTCTCCA
ATTTTCCATTTGTAGTGAACGAAACGACCTCGGACATTATTTGTGTGGTA
TGTAAAAGTNATCTTGAGGATTCGACTCAACAATCACCACAAACTTATGG
TGAACAAGTTGTTATTGCGCATGCGGATAGCACATCAAATGACGATCTCA
TTGTTGATATTGTGAATGAAAATTCAAATAGTGAACCACAAGTCGTTATC
CAAGAGGTTAAGGAAAAAGTTGAAGAAACCGACAAAGTTGAAGTAACTTG
CCCACAACAAGCATCAAGAACTGTAAAACAGCAAAATAAAGAAAGATATT
TGAGAGACTTTCCTAATCATAACTGGCTTTTAGAACGTTTAAAAACGGAG
AAGAAATTAAACTCAAATGAAATCGAGAAAATTGAACAGACAGTATACAA
GCAACATAAACAAGAAACACAGNCATTTGTAGTGAACGAAACGACGTCGG
ACATTATTTGTGTGGTATGTAAAAGTGATGCTACTGAACTCAACAACGAT
ATTGTTCTTTGTGACAACTGTAACGTAGGTAAGAAAGAAATACTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071880-exon-scaffold_64-1575043694:188782..189902 | TCONS_00071880-exon-scaffold_64-1575043694:188782..189902 | Clytia hemisphaerica | exon |
| TCONS_00071880-exon-scaffold_64-1575043694:187255..187370 | TCONS_00071880-exon-scaffold_64-1575043694:187255..187370 | Clytia hemisphaerica | exon |
| TCONS_00071880-exon-scaffold_64-1510915933:188782..189902 | TCONS_00071880-exon-scaffold_64-1510915933:188782..189902 | Clytia hemisphaerica | exon |
| TCONS_00071880-exon-scaffold_64-1510915933:187255..187370 | TCONS_00071880-exon-scaffold_64-1510915933:187255..187370 | Clytia hemisphaerica | exon |
| TCONS_00071880-exon-scaffold_64-1491911889:188782..189902 | TCONS_00071880-exon-scaffold_64-1491911889:188782..189902 | Clytia hemisphaerica | exon |
| TCONS_00071880-exon-scaffold_64-1491911889:187255..187370 | TCONS_00071880-exon-scaffold_64-1491911889:187255..187370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:187255..189902 - |
Blast
The following BLAST results are available for this feature:
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