TCONS_00071874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071874
Unique NameTCONS_00071874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071874 ID=TCONS_00071874|Name=TCONS_00071874|organism=Clytia hemisphaerica|type=transcript|length=1437bp
atctaattGTTCTAATAATTTGATGCATATCTTAAGAAGCATTctaatct
tttttatatttaaacaCAATAGGATGGTATTTTAAATTGAGAGCAGCTGC
AAGATGCCCTTACTCATTTTCAGCACAATTGTTTCATAAGTTTGATTAGT
ATTGATGTGTCTTTGGATGtgacgttttttcaacgttcaaaAAACATTCA
AGAATTTGAAAGCAGTTTCATTAATGTGATACTTTGAAAATTGGACGTCC
TTTGAGCATTCATTTAACGTCGGTTTGAAAGCAGTTTTGAAGGACCTAGA
ATGTTGGTAGCTTCTTCACGGGTTTTTTCAGAGGAACCGAAACACCGCAT
TTATCGTAAATAAAAGTTGCAATACAAGGGAAAACATTTTGAATGCTTAA
TATTTTAGAGGAAGTGTCgctttttaatgttttgataaaatgacaagGTG
TTTGTTATGATTGATGAACTTCTCATATTACAAGACTTGTAACGTTTTAT
AACTTGAAAAACATTCTTATTGATTGTGTCAAAGTTTTACTTCAGTTTAT
AGACAAGCAGTTATAGTTTGAAAAGTAAACTAAGAATTATGCCCGCTTGA
GAAGATAACTTTACACTACTGGTTTAACATCATTATTGCATAAAATGGTT
GGAATGTTGTCGTTTTATAGTATATTGGTGACACTGGTTGTATTTTGCGG
CTCACAAAAACTGAACCCGAATGAGACAGCACCGAACTTTGTATTATCTA
CGCTAGATGGACCATTAATATATAAGGGTTTAAATAAACCAGGTTCAAAC
GTAAAGGGACCTATGATATTTCATTCTTATAGTAGCAAATCTGGATTCTT
AGAGGCTTTGTGGAATAAAGATTCATCTTTGTTGGATTTGATTGATAATT
CACCGGATAATACTCATTATGTGTTTTTAAACTCTGAAGAAGACGCTCAT
AAGACTGCTCTATGGATGAAACAACGATTCCAAAGCATTTTAGAGAAATA
TTTTACCATTGCAAAGTCTCTTGAAAGatgTGATGTCACAAAGCCTGTGA
ATGCTGATCGCAGATCTTTTGGAGGAAGCTCAAAACCGTTACCGTCACGA
CGTAAGAAACATCATTTCCCGAAACCACATCGTCGCATTGAGCGCCGATC
ACTTCCCGATTATGGCAATAATCCTGAACAGGCCGTCATAAAGACGTTCA
AACAACGTCCCAGAATCGTACGAAAGAAAAGCAACATGGCCAAACATCAT
CATGATAAAGCTTGGAATATGAAAACGTATAAAAAACGTAACAATATTGT
ACATTTCCGTAATAATAACGCTGTTTTTACGTTGGCCGGACATTTTAAAC
GACAGACGGAGCGACAATCGAGCCACCGTGATAAGAAAACAGCGTCAAAC
ATTAAACGTCAAACAATTGTAACGGGCGATTCCAAAC
Run BLAST on NCBI

protein sequence of TCONS_00071874-protein

>TCONS_00071874-protein ID=TCONS_00071874-protein|Name=TCONS_00071874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MVGMLSFYSILVTLVVFCGSQKLNPNETAPNFVLSTLDGPLIYKGLNKPG
SNVKGPMIFHSYSSKSGFLEALWNKDSSLLDLIDNSPDNTHYVFLNSEED
AHKTALWMKQRFQSILEKYFTIAKSLERCDVTKPVNADRRSFGGSSKPLP
SRRKKHHFPKPHRRIERRSLPDYGNNPEQAVIKTFKQRPRIVRKKSNMAK
HHHDKAWNMKTYKKRNNIVHFRNNNAVFTLAGHFKRQTERQSSHRDKKTA
SNIKRQTIVTGDSK
Run BLAST on NCBI

transcript from alignment at scaffold_64:82974..86084-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071874 ID=TCONS_00071874|Name=TCONS_00071874|organism=Clytia hemisphaerica|type=transcript|length=3111bp|location=Sequence derived from alignment at scaffold_64:82974..86084- (Clytia hemisphaerica)
ATCTAATTGTTCTAATAATTTGATGCATATCTTAAGAAGCATTCTAATCT
TTTTTATATTTAAACACAATAGGATGGTATTTTAAATTGAGAGCAGCTGC
AAGATGCCCTTACTCATTTTCAGCACAATTGTTTCATAAGTTTGATTAGT
ATTGATGTGTCTTTGGATGTGACGTTTTTTCAACGTTCAAAAAACATTCA
AGAATTTGAAAGCAGTTTCATTAATGTGATACTTTGAAAATTGGACGTCC
TTTGAGCATTCATTTAACGTCGGTTTGAAAGCAGTTTTGAAGGACCTAGA
ATGTTGGTAGCTTCTTCACGGGTTTTTTCAGAGGAACCGAAACACCGCAT
TTATCGTAAATAAAAGTTGCAATACAAGGGAAAACATTTTGAATGCTTAA
TATTTTAGAGGAAGTGTCGCTTTTTAATGTTTTGATAAAATGACAAGGTG
TTTGTTATGATTGATGAACTTCTCATATTACAAGACTTGTAACGTTTTAT
AACTTGAAAAACATTCTTATTGATTGTGTCAAAGTTTTACTTCAGTTTAT
AGACAAGCAGTTATAGTTTGAAAAGTAAACTAAGAATTATGCCCGCTTGA
GAAGATAACTTTACACTACTGGTTTAACATCATTATTGCATAAAATGGTT
GGAATGTTGTCGTTTTATAGTATATTGGTGACACTGGTTGTATTTTGCGG
CTCACAAAAACTGAACCCGAATGAGACAGCACCGAACTTTGTATTATCTA
CGCTAGATGGACCATTAATATATAAGGGTTTAAATAAACCAGGTTCAAAC
GTAAAGGGACCTATGATATTTCATTCTTATAGTAGCAAATCTGGATTCTT
AGAGGCTTTGTGGAATAAAGATTCATCTTTGTTGGATTTGATTGATAATT
CACCGGATAATACTCATTATGTGTTTTTAAACTCTGAAGAAGACGCTCAT
AAGACTGCTCTATGGATGAAACAACGATTCCAAAGCATTTTAGAGAAATA
TTTTACCATTGCAAAGTCTCTTGAAAGGTATGCTTAGATACTTGGAGTTT
TGGTTTCAAATACATCGACGTTGTCAAATACATCGACTGCCAATATTCAA
TTTTAAATAATAGACCCCTAATTTGGTCCCCTCAATTTTGATCATTTTAC
GCAATCTACTGTACCTTTTATTTTGTTTACAGCATCCAGGGGGCACTCCA
TTTAAAAACAACCGTATGTACGGCCTAAAATTATGCCTTTGAAATCGGAC
TTTTACAGTGTAGAGAAAATTTAGCCAAATTTGAGTTAGTTTAAGCGAAA
AATCGATCTCTCTTTAATGTTTTGGCAAAATAAGGTCAGATTTTTCTTGT
CTGTGCTCATTTCGACCCTTACAGTGCACTCTGGGAAGCTTGGAGAAAGA
GGGGTACGCACGTACGGTTGGTCATTCACCTTGATCAGTATTGCAAAGAT
TTCCTTGATTTTGTTAAAAAAATGAATGTGGATTTCCTTTTTATTTTCCA
GATGTGATGTCACAAAGCCTGTGAATGCTGATCGCAGGTAAGCTGCTTGT
TCACTGGAACTACCAATGACTAGTCTTTCTACTGCTCTTTCCAACGATAA
ACGTAGATTTCCTGATACACCTTTGTACAGGAGATACCGGGTGTCCCAGA
AAAAAGTTCCGCTCTTTGAAGTGAATTTTCTCGAGTTCTATTAACTTTTA
AATAATGAATCTTTTTGCATTGGAAAGAGGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTAAATT
TTGAGGGGTCATTTATTAAATTAAGTCAACTTGATCAAAAGTTATAGCCT
AAATGCTAAAACATCACTTTTCAAAAAAGTCAAAAAAAGACAAAAAAAAG
AGGGGATCAAATTCATTGTGAGACAAAGACACAAAAAGCTTTGGAAACTC
TTGGTAAGATTTTGATGAATGTTTGGAGCTCCATCGTGCCCCTTGATTAT
GCCCATGGGAGCTCGTTAAATTAGATAAAGAAATGAAAAGGAATTAACAA
TAAAATAAAGACACCTTAAAGAACTGCATGGAAAAAACTTTGAGCGTAAA
TAAATTGGCAAAAGAAGTGCTTTCTTTATGATGATTTGATCTCCTCTTTT
TTCATCTTTTTTTGACTTTTTTGAAAAGTGATGTTTTAGCATTTTGGCTA
TAACTTTTGATCAAGCTGACTTAATTTAATAAATGACCCCTCAAAATTTA
AGTTTATCCTTCTTCTTTCCAATGCAAAAAGATTCATTATTTAAAAGTTA
ATAGAACTCGAGAAAATTCACTTCAAAGAGCGGAACTTTTTTCTGGGACA
CCCGGTATATGCGATTAAATTTGAGATCTAAGGTCACCCGCTAGATGGGT
TATTTGAAGTTGCATGATTGACACGACCAAATAAAAGTAGCTCGGTAATG
ATAACTGGTTGTCATATAATTTAGGCCTAAATACTTTTATCATCGTTGTA
ATGAAAGTGATAAAATTTTAGTGCAAGTAGATAATCTATCGCCATGCTTC
TGTAACACCCTGCCTGGAAGTGTTTTGGATTCGAATACAGTCCGTTGCAG
CGTGTAAAGTCTGTGATAGAATCCTTCACACTACAAATCGGCAATGAAAT
TTTCATATATAATTCTCTTACGTTTTATGTTTATCAGATCTTTTGGAGGA
AGCTCAAAACCGTTACCGTCACGACGTAAGAAACATCATTTCCCGAAACC
ACATCGTCGCATTGAGCGCCGATCACTTCCCGATTATGGCAATAATCCTG
AACAGGCCGTCATAAAGACGTTCAAACAACGTCCCAGAATCGTACGAAAG
AAAAGCAACATGGCCAAACATCATCATGATAAAGCTTGGAATATGAAAAC
GTATAAAAAACGTAACAATATTGTACATTTCCGTAATAATAACGCTGTTT
TTACGTTGGCCGGACATTTTAAACGACAGACGGAGCGACAATCGAGCCAC
CGTGATAAGAAAACAGCGTCAAACATTAAACGTCAAACAATTGTAACGGG
CGATTCCAAAC

Coding sequence (CDS) from alignment at scaffold_64:82974..86084-

>TCONS_00071874 ID=TCONS_00071874|Name=TCONS_00071874|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at scaffold_64:82974..86084- (Clytia hemisphaerica)
ATCTTTTGGAGGAAGCTCAAAACCGTTACCGTCACGACGTAAGAAACATC
ATTTCCCGAAACCACATCGTCGCATTGAGCGCCGATCACTTCCCGATTAT
GGCAATAATCCTGAACAGGCCGTCATAAAGACGTTCAAACAACGTCCCAG
AATCGTACGAAAGAAAAGCAACATGGCCAAACATCATCATGATAAAGCTT
GGAATATGAAAACGTATAAAAAACGTAACAATATTGTACATTTCCGTAAT
AATAACGCTGTTTTTACGTTGGCCGGACATTTTAAACGACAGACGGAGCG
ACAATCGAGCCACCGTGATAAGAAAACAGCGTCAAACATTAAACGTCAAA
CAATTGTAACGGGCGATTCCAAAATGTGATGTCACAAAGCCTGTGAATGC
TGATCGCAGATGGTTGGAATGTTGTCGTTTTATAGTATATTGGTGACACT
GGTTGTATTTTGCGGCTCACAAAAACTGAACCCGAATGAGACAGCACCGA
ACTTTGTATTATCTACGCTAGATGGACCATTAATATATAAGGGTTTAAAT
AAACCAGGTTCAAACGTAAAGGGACCTATGATATTTCATTCTTATAGTAG
CAAATCTGGATTCTTAGAGGCTTTGTGGAATAAAGATTCATCTTTGTTGG
ATTTGATTGATAATTCACCGGATAATACTCATTATGTGTTTTTAAACTCT
GAAGAAGACGCTCATAAGACTGCTCTATGGATGAAACAACGATTCCAAAG
CATTTTAGAGAAATATTTTACCATTGCAAAGTCTCTTGAAAGATCTTTTG
GAGGAAGCTCAAAACCGTTACCGTCACGACGTAAGAAACATCATTTCCCG
AAACCACATCGTCGCATTGAGCGCCGATCACTTCCCGATTATGGCAATAA
TCCTGAACAGGCCGTCATAAAGACGTTCAAACAACGTCCCAGAATCGTAC
GAAAGAAAAGCAACATGGCCAAACATCATCATGATAAAGCTTGGAATATG
AAAACGTATAAAAAACGTAACAATATTGTACATTTCCGTAATAATAACGC
TGTTTTTACGTTGGCCGGACATTTTAAACGACAGACGGAGCGACAATCGA
GCCACCGTGATAAGAAAACAGCGTCAAACATTAAACGTCAAACAATTGTA
ACGGGCGATTCCAAAATGTGATGTCACAAAGCCTGTGAATGCTGATCGCA
GATGGTTGGAATGTTGTCGTTTTATAGTATATTGGTGACACTGGTTGTAT
TTTGCGGCTCACAAAAACTGAACCCGAATGAGACAGCACCGAACTTTGTA
TTATCTACGCTAGATGGACCATTAATATATAAGGGTTTAAATAAACCAGG
TTCAAACGTAAAGGGACCTATGATATTTCATTCTTATAGTAGCAAATCTG
GATTCTTAGAGGCTTTGTGGAATAAAGATTCATCTTTGTTGGATTTGATT
GATAATTCACCGGATAATACTCATTATGTGTTTTTAAACTCTGAAGAAGA
CGCTCATAAGACTGCTCTATGGATGAAACAACGATTCCAAAGCATTTTAG
AGAAATATTTTACCATTGCAAAGTCTCTTGAAAGATCTTTTGGAGGAAGC
TCAAAACCGTTACCGTCACGACGTAAGAAACATCATTTCCCGAAACCACA
TCGTCGCATTGAGCGCCGATCACTTCCCGATTATGGCAATAATCCTGAAC
AGGCCGTCATAAAGACGTTCAAACAACGTCCCAGAATCGTACGAAAGAAA
AGCAACATGGCCAAACATCATCATGATAAAGCTTGGAATATGAAAACGTA
TAAAAAACGTAACAATATTGTACATTTCCGTAATAATAACGCTGTTTTTA
CGTTGGCCGGACATTTTAAACGACAGACGGAGCGACAATCGAGCCACCGT
GATAAGAAAACAGCGTCAAACATTAAACGTCAAACAATTGTAACGGGCGA
TTCCAAAATGTGATGTCACAAAGCCTGTGAATGCTGATCGCAGATGGTTG
GAATGTTGTCGTTTTATAGTATATTGGTGACACTGGTTGTATTTTGCGGC
TCACAAAAACTGAACCCGAATGAGACAGCACCGAACTTTGTATTATCTAC
GCTAGATGGACCATTAATATATAAGGGTTTAAATAAACCAGGTTCAAACG
TAAAGGGACCTATGATATTTCATTCTTATAGTAGCAAATCTGGATTCTTA
GAGGCTTTGTGGAATAAAGATTCATCTTTGTTGGATTTGATTGATAATTC
ACCGGATAATACTCATTATGTGTTTTTAAACTCTGAAGAAGACGCTCATA
AGACTGCTCTATGGATGAAACAACGATTCCAAAGCATTTTAGAGAAATAT
TTTACCATTGCAAAGTCTCTTGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044617XLOC_044617Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071874-proteinTCONS_00071874-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071874-exon-scaffold_64-1575043694:85058..86084TCONS_00071874-exon-scaffold_64-1575043694:85058..86084Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1575043694:84548..84583TCONS_00071874-exon-scaffold_64-1575043694:84548..84583Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1575043694:82974..83347TCONS_00071874-exon-scaffold_64-1575043694:82974..83347Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1510915933:85058..86084TCONS_00071874-exon-scaffold_64-1510915933:85058..86084Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1510915933:84548..84583TCONS_00071874-exon-scaffold_64-1510915933:84548..84583Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1510915933:82974..83347TCONS_00071874-exon-scaffold_64-1510915933:82974..83347Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1491911889:85058..86084TCONS_00071874-exon-scaffold_64-1491911889:85058..86084Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1491911889:84548..84583TCONS_00071874-exon-scaffold_64-1491911889:84548..84583Clytia hemisphaericaexon
TCONS_00071874-exon-scaffold_64-1491911889:82974..83347TCONS_00071874-exon-scaffold_64-1491911889:82974..83347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:82974..86084 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0577813	0.0563459	0.130846	0.0320031	2.1818	1.84724	9.4716	9.91039	5.96467	4.73449	5.12227	4.77177	4.9765	3.5718	4.8395	8.67934	6.0293	5.11281	2.36478	2.47457	6.11736	5.84504	4.40569	5.66178	5.70743	6.0073	1.78267	1.69112	2.85391	2.48296
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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