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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071872 ID=TCONS_00071872|Name=TCONS_00071872|organism=Clytia hemisphaerica|type=transcript|length=698bp
TTCCATGATGATTGCTTCCATTGTGATTACGACTATGGAAGTACATAATA
GTGGCTGGTTTCATTTTATGACGTCATGGAATTATATGGTCAATGTCACT
TATTTTATCATCGCCTTTGTTAAACATCTTCAATATCAAGGTGATGCTGA
TGAAGGGTACGAAGTGATCAGAGACGAAAATGTGGGTCTAATGGCTGGTG
ACGAAAGCAAACACGAGGTGTTCATGGAAAAAGGATTTGTCCTCAGCGAT
CCCCTTGTCCTCGATACAACCCCTTCCAAATTGTCAATAAGTGATAAATT
CTATTGGTTCTTTCATTCTCTGGCTTTCTTAATGTCCTCCGTGGTCGTTG
TAGTATACTGGCCAATCCTGTTCGATCCATCTTCATTTGAAACCGATTTT
TATTGGTTCCAAGCAATTGATCGACACGGGATTGTATATCTCTTGTTTAT
TTTCCAATACATCTTCAACAAGATTCCAATCCATATATTCCATTGTGTGT
ATGCTATCGCAGTTGGTGTCATATTTTTTATTCACACCTATATTTATTAC
TTGGTGACCAGCAGGTTGGTTTATTCCATCTTTGATTGGGGTAATGCACC
TTTGAAAGCGTTCTACTACTTCCTGGGAATTGTTGGGTTGGCTCTCATAC
TACAATTCATCTTATACGGTATTGATCGATTTAAGCATTGGCTTggta Run BLAST on NCBI transcript from alignment at scaffold_64:66976..69940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071872 ID=TCONS_00071872|Name=TCONS_00071872|organism=Clytia hemisphaerica|type=transcript|length=2965bp|location=Sequence derived from alignment at scaffold_64:66976..69940- (Clytia hemisphaerica)
TTCCATGATGATTGCTTCCATTGTGATTACGACTATGGAAGTACATAATA
GTGGCTGGTTTCATTTTATGACGTCATGGAATTATATGGTCAATGTCACT
TATTTTATCATCGCCTTTGTTAAACATCTTCAATATCAAGGTTTGTATTG
ACATTCATTAGTTCACTGATCTGATTTATTTGCGATGTTAAGTATCTTTC
TAGATAAGATAGATTTTAAGTCTTCGTTCGCCCCACGCACTTTTCTACGG
GCTGGTCGGAAAGCAAGCTAGACGTACCCCGCAAAGAAATCAACGNAATT
TTCCTAATGAAAAATGAAGTACACAGTAGAACCAGCAAATCTTTGTTGAG
GCTTGATTGTGCTTATCTATTTTTGACACTTTTAGCCTTAATTCTTCTCA
TATTGTTCGAATTTTTAGTTCAAATATGGGTTATTCCTATCTTGATAACC
TATTTTAACCGTTTTGACCCTTAATTTGTCAAAAATTCTGGCATTACATG
CTGAGGATTGTTCTTATTCTTGGCCTTTTTCTCATCCTCTAATAAAGTGA
TTCTAACAAAAATAGAGTATTCTGATAACTTAAACTTCCTTATTATTAGC
TGGACAGGATAACGTTTGTAACTGTTTATCTATCTAAACGTAAATTTAAA
GTTAACAGTTTTCGGGGTGAAGTCATGCTCTACTATAAATGNGCGGATAC
ACAAGGTGGGGAAGGTGCAGCTTGTTTTCGATCAGCCTGTAAAAAAGTGC
CGTGGCGCGAATGAAGGCTGGAGAAAATTCGCCCCTCGTCGTGATTTATC
TATCGATACTTAACCTCACTATTTGAACTTGTTTTAGGGTTTCTGTTGGG
CGTTTTCAGACATCACAGGGGCCACGGCAGCGGGGGGCCACCCGGGCCTT
GGCAGGACCACATTTTTTCAAAGCAAAAAGGAAATTTACTGATTCAGCTA
AATTCTGCGTAAAAACCTTGAAATAGACCTGTTTTAGGCAGTCTAGAAGG
GCTAATTTTTGTAAATTTCTCCCGTCGGCGCCAACCATTGTGGCACCTCC
TTAGACACTAAAGCATGGCCCTACCACTTTCAAAGTGAAGCCGCAGCCCC
TGCATCAGTCAGCGCAGCTCTGGTCAGAGTTCAAAATATAGTTCTATTAG
CATATTCTCTTATCCAAAAAGTACGCCCCAGAGATAATAAAAACCGAAGG
TATTGAATTTGAAAATGTTAGGTCATCCCCAGTTTTAACCGCGATATATA
CACATAACCTCTCTCGATTGGGGCAAGGGTTAGGAGGGAACTTGATATGA
AAAACTACTTTAAATTACTATTACCATTATCCGGCCAAAAATCAGGCTTC
AACTTTGGTAGGACGCTCACCTTTCAGTGCTTCCCCCAGGAATATCGAGT
ACTCGACAACTTTATGGCGTTTAGGGTTTATAGCCACTGTTATCGATAAT
TCTATTCCTTTTTACGATTTTTTCGAAATTTGAGAGCTCAGGTTTTTGGG
CTCCAAACATTCGATTTTTGGATGTTACTAAAACTCTAGTAACTCTTGCA
GTAGCGGAAAAATCGAATTTTGTATATTTTTTGGTAAAGTATTCGCTAAA
GGCTGCTACTAGGTANTTTGATTCACTGTGTTTTGTGACGAAAATTAATT
TCTAACTGGAATAGGTTCGGCAAATGTGAATTGAGGCTGCTCTAACAAAA
ACGTACAAAAATTGAGGGGCGTAACTGAAATTTTTAAAATCGACCAAGAA
AGCTAAATTTGAAAAAATTGAAGTGTGAATTATGTAAATATCTTCATGTT
CCGAAAAAACGGTTTTTTTTCACACAGCAGTTATGTATACATAGTGCGGA
ACAATAAAAAAAACAACTCATGTGAGAGAACCGTCTCTTAATCATTTTCA
TTTGGCAAGATTGCAAGATGGGATTCAGAGATGAGTTTCGGTGCTCGAGT
TTTGGTTTTGAGGGTGTGGAAAGATCAGCACTCTACAAATCTTACGTGAG
TTTTAACAATATTCATAAGTGTTAACTCACTCTCTAATTCAAACCTCTAT
TATTCGAATCCCCTTGAAGACCGAATTAGAGAGGACCAATTTTAAACGGG
TTTCCTATCAAATTCAGTGGGGATGGAAAAAATAGCAAAATATTCTGTGG
TGAGAATAATACTGTGGCTAATTTTTCCTGTAGGTGGGGGTCCTCCCGGG
TCTGTGAGAAGGGGATGCAATATTGAAGAGTCTTGCGTTANAACTCTTGC
AGTAGCAGAAAAATCGAATTTTGTATATTTTTTGGTAAGGTATTCGCTAA
AGGCTGCTACTAGGTGTATAGAGTCAATTCAAGTCAGTCATAAAATATCC
TCAGTCCTGGTAGGAGTTTATTATGAAAAGACCATTAAAGTTGTGTTTCA
TCCATAGGTGATGCTGATGAAGGGTACGAAGTGATCAGAGACGAAAATGT
GGGTCTAATGGCTGGTGACGAAAGCAAACACGAGGTGTTCATGGAAAAAG
GATTTGTCCTCAGCGATCCCCTTGTCCTCGATACAACCCCTTCCAAATTG
TCAATAAGTGATAAATTCTATTGGTTCTTTCATTCTCTGGCTTTCTTAAT
GTCCTCCGTGGTCGTTGTAGTATACTGGCCAATCCTGTTCGATCCATCTT
CATTTGAAACCGATTTTTATTGGTTCCAAGCAATTGATCGACACGGGATT
GTATATCTCTTGTTTATTTTCCAATACATCTTCAACAAGATTCCAATCCA
TATATTCCATTGTGTGTATGCTATCGCAGTTGGTGTCATATTTTTTATTC
ACACCTATATTTATTACTTGGTGACCAGCAGGTTGGTTTATTCCATCTTT
GATTGGGGTAATGCACCTTTGAAAGCGTTCTACTACTTCCTGGGAATTGT
TGGGTTGGCTCTCATACTACAATTCATCTTATACGGTATTGATCGATTTA
AGCATTGGCTTGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071872-exon-scaffold_64-1575043694:69801..69940 | TCONS_00071872-exon-scaffold_64-1575043694:69801..69940 | Clytia hemisphaerica | exon |
| TCONS_00071872-exon-scaffold_64-1575043694:66976..67533 | TCONS_00071872-exon-scaffold_64-1575043694:66976..67533 | Clytia hemisphaerica | exon |
| TCONS_00071872-exon-scaffold_64-1510915933:69801..69940 | TCONS_00071872-exon-scaffold_64-1510915933:69801..69940 | Clytia hemisphaerica | exon |
| TCONS_00071872-exon-scaffold_64-1510915933:66976..67533 | TCONS_00071872-exon-scaffold_64-1510915933:66976..67533 | Clytia hemisphaerica | exon |
| TCONS_00071872-exon-scaffold_64-1491911889:69801..69940 | TCONS_00071872-exon-scaffold_64-1491911889:69801..69940 | Clytia hemisphaerica | exon |
| TCONS_00071872-exon-scaffold_64-1491911889:66976..67533 | TCONS_00071872-exon-scaffold_64-1491911889:66976..67533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:66976..69940 - |
Blast
The following BLAST results are available for this feature:
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