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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071866 ID=TCONS_00071866|Name=TCONS_00071866|organism=Clytia hemisphaerica|type=transcript|length=2099bp
caattttttttatggaaaGCCCAATCCGGCTTCGAACCTGAAAATAGTTT
TGTTGTACCATGGATGAGAGTTTTGAAACTATCGTATTAGTAACAGTTTG
TTGACTTCCTTATAAACCTGGAACTGGATTTCGACAACTCCCTAAATGCA
CCTTAAAAAGGTTTAATCTAGCAATGGCAAGAGATGTATGTATGTAAGGT
TACATAAATCATAGTCAATTTTATACTAAATTTCATTGGTCAATCGGTTG
AAGGTTGATGACGTTGGCCTAAACCAAGAGGAACCTGAACTCTCAAGACC
TAAAAGGCCTTGCGAAGaaacttttccagaaaattctGTCACACGAATTC
CAACCAGTAGGAATGTAATTTTTTGTGTTGACCTAGCGTCGTAGAATACG
TTGAAAATCAAAAGGCGTTTCCTTCGCCTTGGTTTCCCCACATCGAAACA
TAAATCTAAGTTCTAAATAGACACGTGCTTTCGCATCAGAGACTTGATTG
AAATTAGGGAACAAAAGGACTCGTTAATAAACTCAAAGCAAATCGCTAAG
GCGAGAGGAGCCTTAATTGTTTAACGATGTCTCCTGAATTAGTGGAAAAT
CGCATAAAAAGACTTCTTTAACGAGGTAATATCATCTTAATTAAGTACTT
GCACGTTTAATCTCTCCCTATTATGAAGGGTAATCAATTTGTTTGAAGAA
CTATATAATACGTTTGATTTTTAAACCTTTAATGAAGTCATCCTATTAAT
TAACGAAtaataaaagaaattgaaaaggtTTAATGTTTGCCCCCTGGTAA
TGGTATTCGATAAAGATATCCTCATGTGTCAACTGAGTTTTCATTTGGCA
ATAGAGCGCAAATTGAAACGGACATACAGACAATACAACAGTGGTGAAGA
AAATATATAAGTCTGAAACCTATGAATCACATCGAAAATATAAAGAACCT
ACCTACTTAAACgaacgaaaaatttgaattgaaattgaaagaaGACTGAG
GAAAATAGTACCTGGTTTTAATGCTTTATGTCACCAGAACTGACGTAGAC
CATTGAAGTATCAACTTGATTGTGACGTACTCTAGAAAAGAAGGAACAGT
TGTAAAATATAAGACATTACAGCGTGGAAATACAATTTTACGATCCAAAA
TGCATGATAAAACTCGAAAGCGAAGCAGTTTTATGATGGATGACATATTG
AGTGGAGTAGAGGGTAAAAGAGACAATCATAAATATAGTGAAAAATCGAT
GACTATGAACAACGATCTTACCATAAATGAAGTCGTCCAAAAGAAGTTGA
AACTAGCTTCAGATGAGGTTTCCAATCGTGCATTTGTAGAGGAGGAGGAC
GATGTTTTCGACTaCACCAAAATTGATTCACCTCCATCACCGGAAATTCG
AAAACTGCGGACAACGTTTTCATCGGAACAAGTGCTACTGTTAGAAAAGC
GTTTTACAAAACAAAGGTACTTGTCAGCAAATGAGAGATTGGAACTAGCG
AAGAAACTCAAGCTCTCTGATAACCAGGTCAAAACATGGTACCAAAACAG
ACGAATGAAACTAAAACGTCAACTCAAAATACAAATGCAACGTTACCACG
AAGAACTTTACTTCCAAAGTCTTCATAACTGTTTTATACAACAACAGCCC
CATAACGCCCCACACCCTCTTCAAAATACGCCCCCATTATATCAAAACCC
GCAACATCCACAACCACCACATGAATCACGTCACTGTTTCCGTGACAACA
ACGCTATCAAACCAATGCCGTATCTACGCCCGTCGATTTCACCGACGACG
CCACGTCATCACGGAAAATCACCGGATTGCAACCAAGTGTCCTGTCGTTG
CCGGCAAAATAGTCTCGAAATTTAATGATGTGATGCGAACTTTTATCAAC
GGGGTTATTATAAGTGTATGTAGTGAAAATATGACATGTGAATATTCTGT
AAATAATATAGACCAAATACTTAACTTTTTATGGTATTTTAGAGTcattt
tttgtgtacataagaaaaaaatattttttattaaaaagtaaaGATGTATA
AAATATAAGATAATTAGAGTCGATAGATGCAAATAAATGAAACTCTTAC Run BLAST on NCBI protein sequence of TCONS_00071866-protein >TCONS_00071866-protein ID=TCONS_00071866-protein|Name=TCONS_00071866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
MHDKTRKRSSFMMDDILSGVEGKRDNHKYSEKSMTMNNDLTINEVVQKKL
KLASDEVSNRAFVEEEDDVFDYTKIDSPPSPEIRKLRTTFSSEQVLLLEK
RFTKQRYLSANERLELAKKLKLSDNQVKTWYQNRRMKLKRQLKIQMQRYH
EELYFQSLHNCFIQQQPHNAPHPLQNTPPLYQNPQHPQPPHESRHCFRDN
NAIKPMPYLRPSISPTTPRHHGKSPDCNQVSCRCRQNSLEI Run BLAST on NCBI transcript from alignment at scaffold_64:15816..18564- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071866 ID=TCONS_00071866|Name=TCONS_00071866|organism=Clytia hemisphaerica|type=transcript|length=2749bp|location=Sequence derived from alignment at scaffold_64:15816..18564- (Clytia hemisphaerica)
CAATTTTTTTTATGGAAAGCCCAATCCGGCTTCGAACCTGAAAATAGTTT
TGTTGTACCATGGATGAGAGTTTTGAAACTATCGTATTAGTAACAGTTTG
TTGACTTCCTTATAAACCTGGAACTGGATTTCGACAACTCCCTAAATGCA
CCTTAAAAAGGTTTAATCTAGCAATGGCAAGAGATGTATGTATGTAAGGT
TACATAAATCATAGTCAATTTTATACTAAATTTCATTGGTCAATCGGTTG
AAGGTTGATGACGTTGGCCTAAACCAAGAGGAACCTGAACTCTCAAGACC
TAAAAGGCCTTGCGAAGAAACTTTTCCAGAAAATTCTGTCACACGAATTC
CAACCAGTAGGAATGTAATTTTTTGTGTTGACCTAGCGTCGTAGAATACG
TTGAAAATCAAAAGGCGTTTCCTTCGCCTTGGTTTCCCCACATCGAAACA
TAAATCTAAGTTCTAAATAGACACGTGCTTTCGCATCAGAGACTTGATTG
AAATTAGGGAACAAAAGGACTCGTTAATAAACTCAAAGCAAATCGCTAAG
GCGAGAGGAGCCTTAATTGTTTAACGATGTCTCCTGAATTAGTGGAAAAT
CGCATAAAAAGACTTCTTTAACGAGGTAATATCATCTTAATTAAGTACTT
GCACGTTTAATCTCTCCCTATTATGAAGGGTAATCAATTTGTTTGAAGAA
CTATATAATACGTTTGATTTTTAAACCTTTAATGAAGTCATCCTATTAAT
TAACGAATAATAAAAGAAATTGAAAAGGTTTAATGTTTGCCCCCTGGTAA
TGGTATTCGATAAAGATATCCTCATGTGTCAACTGAGTTTTCATTTGGCA
ATAGAGCGCAAATTGAAACGGACATACAGACAATACAACAGTGGTGAAGA
AAATATATAAGTCTGAAACCTATGAATCACATCGAAAATATAAAGAACCT
ACCTACTTAAACGAACGAAAAATTTGAATTGAAATTGAAAGAAGACTGAG
GAAAATAGTACCTGGTTTTAATGCTTTATGTCACCAGAACTGACGTAGAC
CATTGAAGTATCAACTTGATTGTGACGTACTCTAGAAAAGAAGGAACAGT
TGTAAAATATAAGACATTACAGCGTGGAAATACAATTTTACGATCCAAAA
TGCATGATAAAACTCGAAAGCGAAGCAGTTTTATGATGGATGACATATTG
AGTGGAGTAGAGGGTAAAAGAGACAATCATAAATATAGTGAAAAATCGAT
GACTATGAACAACGATCTTACCATAAATGAAGTCGTCCAAAAGAAGTTGA
AACTAGCTTCAGATGAGGTTTCCAATCGTGCATTTGTAGAGGAGGAGGAC
GATGTTTTCGACTGTAAGTTGACTTTTCTAATCTTTATATCACATTATTT
CTGTTTCGTTTTGAAATTCACCAAGAGCTACCAAGAGATGATTTGATTCG
TTAACTTCCATTGTTTTGATATTTCTCAACACCAAAGTTCCCAATTATAA
TAAATCAATGATCTTGCTTCCAAACAAAAATGCATTAATTAGTTCTTATA
TGATTTTGAATAGCTCATCCATATACGCCTCAACCCAAAGGCGTTGAACT
GAAAATAAAAGACACAAATTGAAAACTATAAAATAATACATTACGCTTCA
GCCATAACAGAATAATGAACAGAATCTTATGGCATGAATAACCCTCCCCA
ATTCCTGCATCAGGAATAATTTTTTATATATCCCTTTTCTTTTCTTTTTT
ACTTTAGACACCAAAATTGATTCACCTCCATCACCGGAAATTCGAAAACT
GCGGACAACGTTTTCATCGGAACAAGTGCTACTGTTAGAAAAGCGTTTTA
CAAAACAAAGGTACTTGTCAGCAAATGAGAGATTGGAACTAGCGAAGAAA
CTCAAGCTCTCTGATAACCAGGTAATTATGTTTTCTTAATTCTCAAACTA
TCCAGCTTTCAAAGCAACAGAGAGGATTAGTTAGGTTCGGTTATTTGCTA
TAGGAAATAAATTTTGAGAAGCAAAACTCAACAAGGAATGATATGATCCA
TGCAATTTTAGTATAAAAATATTCAACTGTTGGTACGAAAAAATATTTCA
AAAATTAGAATATCAAAAATACTTCAATAAATTCCTATCATCTAAACAAT
CTCCTTCTGGTATCTCTCAATTAACAGGTCAAAACATGGTACCAAAACAG
ACGAATGAAACTAAAACGTCAACTCAAAATACAAATGCAACGTTACCACG
AAGAACTTTACTTCCAAAGTCTTCATAACTGTTTTATACAACAACAGCCC
CATAACGCCCCACACCCTCTTCAAAATACGCCCCCATTATATCAAAACCC
GCAACATCCACAACCACCACATGAATCACGTCACTGTTTCCGTGACAACA
ACGCTATCAAACCAATGCCGTATCTACGCCCGTCGATTTCACCGACGACG
CCACGTCATCACGGAAAATCACCGGATTGCAACCAAGTGTCCTGTCGTTG
CCGGCAAAATAGTCTCGAAATTTAATGATGTGATGCGAACTTTTATCAAC
GGGGTTATTATAAGTGTATGTAGTGAAAATATGACATGTGAATATTCTGT
AAATAATATAGACCAAATACTTAACTTTTTATGGTATTTTAGAGTCATTT
TTTGTGTACATAAGAAAAAAATATTTTTTATTAAAAAGTAAAGATGTATA
AAATATAAGATAATTAGAGTCGATAGATGCAAATAAATGAAACTCTTAC Coding sequence (CDS) from alignment at scaffold_64:15816..18564- >TCONS_00071866 ID=TCONS_00071866|Name=TCONS_00071866|organism=Clytia hemisphaerica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_64:15816..18564- (Clytia hemisphaerica)
GTCAAAACATGGTACCAAAACAGACGAATGAAACTAAAACGTCAACTCAA
AATACAAATGCAACGTTACCACGAAGAACTTTACTTCCAAAGTCTTCATA
ACTGTTTTATACAACAACAGCCCCATAACGCCCCACACCCTCTTCAAAAT
ACGCCCCCATTATATCAAAACCCGCAACATCCACAACCACCACATGAATC
ACGTCACTGTTTCCGTGACAACAACGCTATCAAACCAATGCCGTATCTAC
GCCCGTCGATTTCACCGACGACGCCACGTCATCACGGAAAATCACCGGAT
TGCAACCAAGTGTCCTGTCGTTGCCGGCAAAATAGTCTCGAAATTTAAAC
ACCAAAATTGATTCACCTCCATCACCGGAAATTCGAAAACTGCGGACAAC
GTTTTCATCGGAACAAGTGCTACTGTTAGAAAAGCGTTTTACAAAACAAA
GGTACTTGTCAGCAAATGAGAGATTGGAACTAGCGAAGAAACTCAAGCTC
TCTGATAACCAGATGCATGATAAAACTCGAAAGCGAAGCAGTTTTATGAT
GGATGACATATTGAGTGGAGTAGAGGGTAAAAGAGACAATCATAAATATA
GTGAAAAATCGATGACTATGAACAACGATCTTACCATAAATGAAGTCGTC
CAAAAGAAGTTGAAACTAGCTTCAGATGAGGTTTCCAATCGTGCATTTGT
AGAGGAGGAGGACGATGTTTTCGACTGTCAAAACATGGTACCAAAACAGA
CGAATGAAACTAAAACGTCAACTCAAAATACAAATGCAACGTTACCACGA
AGAACTTTACTTCCAAAGTCTTCATAACTGTTTTATACAACAACAGCCCC
ATAACGCCCCACACCCTCTTCAAAATACGCCCCCATTATATCAAAACCCG
CAACATCCACAACCACCACATGAATCACGTCACTGTTTCCGTGACAACAA
CGCTATCAAACCAATGCCGTATCTACGCCCGTCGATTTCACCGACGACGC
CACGTCATCACGGAAAATCACCGGATTGCAACCAAGTGTCCTGTCGTTGC
CGGCAAAATAGTCTCGAAATTTAAACACCAAAATTGATTCACCTCCATCA
CCGGAAATTCGAAAACTGCGGACAACGTTTTCATCGGAACAAGTGCTACT
GTTAGAAAAGCGTTTTACAAAACAAAGGTACTTGTCAGCAAATGAGAGAT
TGGAACTAGCGAAGAAACTCAAGCTCTCTGATAACCAGATGCATGATAAA
ACTCGAAAGCGAAGCAGTTTTATGATGGATGACATATTGAGTGGAGTAGA
GGGTAAAAGAGACAATCATAAATATAGTGAAAAATCGATGACTATGAACA
ACGATCTTACCATAAATGAAGTCGTCCAAAAGAAGTTGAAACTAGCTTCA
GATGAGGTTTCCAATCGTGCATTTGTAGAGGAGGAGGACGATGTTTTCGA
CTGTCAAAACATGGTACCAAAACAGACGAATGAAACTAAAACGTCAACTC
AAAATACAAATGCAACGTTACCACGAAGAACTTTACTTCCAAAGTCTTCA
TAACTGTTTTATACAACAACAGCCCCATAACGCCCCACACCCTCTTCAAA
ATACGCCCCCATTATATCAAAACCCGCAACATCCACAACCACCACATGAA
TCACGTCACTGTTTCCGTGACAACAACGCTATCAAACCAATGCCGTATCT
ACGCCCGTCGATTTCACCGACGACGCCACGTCATCACGGAAAATCACCGG
ATTGCAACCAAGTGTCCTGTCGTTGCCGGCAAAATAGTCTCGAAATTTAA
ACACCAAAATTGATTCACCTCCATCACCGGAAATTCGAAAACTGCGGACA
ACGTTTTCATCGGAACAAGTGCTACTGTTAGAAAAGCGTTTTACAAAACA
AAGGTACTTGTCAGCAAATGAGAGATTGGAACTAGCGAAGAAACTCAAGC
TCTCTGATAACCAGATGCATGATAAAACTCGAAAGCGAAGCAGTTTTATG
ATGGATGACATATTGAGTGGAGTAGAGGGTAAAAGAGACAATCATAAATA
TAGTGAAAAATCGATGACTATGAACAACGATCTTACCATAAATGAAGTCG
TCCAAAAGAAGTTGAAACTAGCTTCAGATGAGGTTTCCAATCGTGCATTT
GTAGAGGAGGAGGACGATGTTTTCGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071866-exon-scaffold_64-1575043694:17202..18564 | TCONS_00071866-exon-scaffold_64-1575043694:17202..18564 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1575043694:16644..16807 | TCONS_00071866-exon-scaffold_64-1575043694:16644..16807 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1575043694:15816..16387 | TCONS_00071866-exon-scaffold_64-1575043694:15816..16387 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1510915933:17202..18564 | TCONS_00071866-exon-scaffold_64-1510915933:17202..18564 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1510915933:16644..16807 | TCONS_00071866-exon-scaffold_64-1510915933:16644..16807 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1510915933:15816..16387 | TCONS_00071866-exon-scaffold_64-1510915933:15816..16387 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1491911889:17202..18564 | TCONS_00071866-exon-scaffold_64-1491911889:17202..18564 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1491911889:16644..16807 | TCONS_00071866-exon-scaffold_64-1491911889:16644..16807 | Clytia hemisphaerica | exon |
| TCONS_00071866-exon-scaffold_64-1491911889:15816..16387 | TCONS_00071866-exon-scaffold_64-1491911889:15816..16387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:15816..18564 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00071866 vs. Swiss-Prot (Human)
Match: BARH1 (BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.116e-19 Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 1
Query: 1174 SSFMMDDILSGVEGKRDNHKYSEKSMTMNND------LTINEVVQKKL-KLASDEVSNRAF-VEEEDDVFDYTKIDSPPS--PEIRKLRTTFSSEQVLLLEKRFTKQRYLSANERLELAKKLKLSDNQVKTWYQNRRMKLKRQLKIQMQRYHEELYFQSLHNCFIQQQPHNAPHPL-QNTPP-----LYQNPQHPQP 1716
SSF++ DIL+ + YS + E + KL K S+ S+ + V+EE D + DSPP + RK RT F+ Q+ LE+ F +Q+YLS +R+ELA L L+D QVKTWYQNRR K KRQ + ++ E + +L F P+ P L N P LY+ P P P
Sbjct: 94 SSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMF--PSPYFYPQSLVSNLDPGAALYLYRGPSAPPP 288
The following BLAST results are available for this feature:
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