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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071865 ID=TCONS_00071865|Name=TCONS_00071865|organism=Clytia hemisphaerica|type=transcript|length=987bp
GTAAGATATAAATactcgagaaaaaaaacatgcatATACAAGAATTTGTA
CAATACGCTGAAGAATGGAGAATTTGACTTTTTATTGTtaataaaacaaa
gacattACATTGAGCTGCATCGAGTAATGCTTATTTGTCTTCATTATGAG
GTGATCAAGGGTGAAAAGTTTTGACCCATTCAATTATTGGTGGTTTTCAT
TTGAATTCAACTCAATCGTTGCAACTGCTTGTGACGaCCAAAGCATTGTT
TTCAAGAGGATTTGAGATTCCCTTACAAGcttcatttttgcaaaatacaA
AAGACAATATGTATCTGTTAGAAAAGATCAATTGTTGTTGTAACTTTGTG
TCTCGTACTCTTGAGTAATTGGCAATGTTCTGGTTAATACTGTGGCATAC
ATGATCATGCACCGAACCCTGGATATTTGGTGGCTTTGGACTTGTCATAT
CTAAGGAAGTTATTTTGGTTAGCTAATGATATGGTTGCATGTTGCTGCTA
TTCGACTGGTAAAACATATGACACTGGTTTCAGATGTCTGATGAATAAGA
TTTTCTGTAAAGGACATCCACTAATGAAATCTGAACTGAAGAAGCTAATG
GACATTGGTTTGTAAGTTTATCAAATTTAATTCATtatcgtttttatttt
ttattgtctGGTGATTGTAAACTTTAAAAGATTGGCAACTATTAGGCTTG
TGTTGAACATTAGAGCATAGCAGTTGAAAAGAAAGttactttccaaaaaa
acaactGATTCACACCATGTTAAACATCCATAATTCtgagaagataaaaa
aagtgttgcttttgaattgaatttacGAATAAGCTGAGAGACTTCAGCGT
CTCTGTTGATGATTTAGCAATCTCTGTTTCGGTAGTTCATGTCTGGTAGT
GCAATTAAtctaaaagcatttttttaacaaagtgtaattttcaaaacttc
taGGATGTTGTCTTAATGGGTTTAGTCTGATTTGCTT Run BLAST on NCBI transcript from alignment at scaffold_64:307622..310773+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071865 ID=TCONS_00071865|Name=TCONS_00071865|organism=Clytia hemisphaerica|type=transcript|length=3152bp|location=Sequence derived from alignment at scaffold_64:307622..310773+ (Clytia hemisphaerica)
GTAAGATATAAATactcgagaaaaaaaacatgcatATACAAGAATTTGTA
CAATACGCTGAAGAATGGAGAATTTGACTTTTTATTGTtaataaaacaaa
gacattACATTGAGCTGCATCGAGTAATGCTTATTTGTCTTCATTATGAG
GTGATCAAGGGTGAAAAGTTTTGACCCATTCAATTATTGGTGGTTTTCAT
TTGAATTCAACTCAATCGTTGCAACTGCTTGTGACGGTTCGTAttactta
ttttttgaaaagagataaTATATGTTTAACCCCAGTCTCAGTTTTCAACA
AGCAAAACGCGAGGTCTGTTATAAcgaaaaaaggttttgtaaaaaataat
ttgagttagctaactcgaaaaactTAAGTTAAAACTTAAAACTTGAGTTA
ATAATTCTAACTCGGAAATccttttttggaaatgaaaaatcgaattagag
tcaagtgacgtcataatttgcacttttatgacCTCATAATTTAGTTCACT
CAAAAATTCCTAACTTGAAAATTGCTAACTCaaagttttttaactcaaag
attCCAGGCCTCCCATTTTTGTCGAAACTGTTATTTTGCTTAAAATCCCT
CCGCTTTGATATTATCAGTGctaaaaaacaaataaacaagTTAACTTGTG
CCCTGACCGAATATTTATCTAGTTTCCAATTTTTAAcgatttaagggctc
tggccatagtcaaaaagtttgttaagaGATCTGaacataaaacttttgtt
ttgggttctttgacatttttaacaaaaaaactgcCTTTACAAGTTGTTTA
GAAATTCATTTTGTCAAGAGTATTTAAGAATTTGATTACTAAAATTACGA
TTTATATTAATCTCTNAAAGTTTGTTAAGAGATCTGaacataaaactttt
gttttgggttctttgacatttttaacaaaaaaactgcCTTTACAAGTTGT
TTAGAAATTCATTTTGTCAAGAGTATTTAAGAATTTGATTACTAAAATTA
CGAATCATATCAATctgatttacaaaaaaatgctaagtttcaatgggtaa
ttaacctttttcattcgaaatgtttttaaattgtcagcaaagaattgaac
tattttaatttttttggaaaaattttctaaattgatgtatATCCAAAATT
ATGACTGTTTTTCtacgaaaaattgggatgaaaaattggttaaaaaccac
tattttcaagattttgagacaaagaagcttctacaaaaatattctgaaaa
tctatttttagtttggttaaagatacagCTTataacgcaaaaaaaaattt
tcaaaaagaattttcattgccgaaaataaggtcttcaaagttgaaatacc
cTTCTTtgcaaatgtcttcattttccccattcatcattttttttcattgc
gatttttaaattttcagatttaagAATAATTGGccaaacaaaaaatgtat
aacatgccatagttatGTTGGTTACATCAGGCAAAAATCTATATTTCACA
CAtggcaaatatgaaaaattcactatggtcagagccctttaaAGCTGCTA
AAGTGCTAGACATTCTGTAAATTGTAATTTTCCGAACCACCAGCCTTTTT
GGTGGCTGACATTTTTGGCCCTATTTTAACACAATGATTTCATGTGAAAT
AACAAGAATATCCTTCTTCCTCAAGTCATTTTAAATTGAGTTTAAAATAA
ACGCTTTTAAGTCAACTTCAAATAAATTTCCAATTTATACTGTCGATCTT
AGTTAATATCGTACTTTTGTCTCATTTTTGccgattttttatgtttcaaa
ataAGTTTTAGTTGGGTTTTCCCGAGTACACAATAAATAATGTATGGCTT
AATCTCATTATTTAGCTTATcaacttttctctttttgtttagaCCAAAGC
ATTGTTTTCAAGAGGATTTGAGATTCCCTTACAAGcttcatttttgcaaa
atacaAAAGACAATATGTATCTGTTAGAAAAGATCAATTGTTGTTGTAAC
TTTGTGTCTCGTACTCTTGAGTAATTGGCAATGTTCTGGTAAGAGTTCAA
TTTATATTCTTGTCTATTCAAGGTGCATTATTCTAATTTTTCTAGTAGGA
CTTAGAGagcaagaaaaattaaaaggttACAGGAAACATAAAATTACCCC
CGAGCCAAAAACGTTTGATTGTTTACAAATTTATGATAATTTGCAATAAC
ATTTCATAATGATAGtagtgaaattattttttcaatacgtTAAGTTTCAG
CTTATTTTCAATACTTTCAGTTTCAATCAATCCTCAgttaaaaataattt
ggaaaATCCAATCCAATATCGTTTTTTCCTCTTCTGACTTTTCGCCGGAT
TAAATTATCGTTTGTAGACGTTTTTGAGTCAGTGAATTTGGTCTAATCAA
AGCCAGACCAAACCCCATGTTTTGATTGCAGTTTCTTCCGTACCATCATG
TAATAcacatcaaataaaaaaaataaaaaacattacaaCATAGTTGTTAG
TAGTTGGAAAAATTATCCtacataactttttattttgtctttattAGGTT
AATACTGTGGCATACATGATCATGCACCGAACCCTGGATATTTGGTGGCT
TTGGACTTGTCATATCTAAGGAAGTTATTTTGGTTAGCTAATGATATGGT
TGCATGTTGCTGCTATTCGACTGGTAAAACATATGACACTGGTTTCAGAT
GTCTGATGAATAAGATTTTCTGTAAAGGACATCCACTAATGAAATCTGAA
CTGAAGAAGCTAATGGACATTGGTTTGTAAGTTTATCAAATTTAATTCAT
tatcgtttttattttttattgtctGGTGATTGTAAACTTTAAAAGATTGG
CAACTATTAGGCTTGTGTTGAACATTAGAGCATAGCAGTTGAAAAGAAAG
ttactttccaaaaaaacaactGATTCACACCATGTTAAACATCCATAATT
CtgagaagataaaaaaagtgttgcttttgaattgaatttacGAATAAGCT
GAGAGACTTCAGCGTCTCTGTTGATGATTTAGCAATCTCTGTTTCGGTAG
TTCATGTCTGGTAGTGCAATTAAtctaaaagcatttttttaacaaagtgt
aattttcaaaacttctaGGATGTTGTCTTAATGGGTTTAGTCTGATTTGC
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071865-exon-scaffold_64-1491911889:307622..307857 | TCONS_00071865-exon-scaffold_64-1491911889:307622..307857 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1510915933:307622..307857 | TCONS_00071865-exon-scaffold_64-1510915933:307622..307857 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1575043694:307622..307857 | TCONS_00071865-exon-scaffold_64-1575043694:307622..307857 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1491911889:309514..309659 | TCONS_00071865-exon-scaffold_64-1491911889:309514..309659 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1510915933:309514..309659 | TCONS_00071865-exon-scaffold_64-1510915933:309514..309659 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1575043694:309514..309659 | TCONS_00071865-exon-scaffold_64-1575043694:309514..309659 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1491911889:310169..310773 | TCONS_00071865-exon-scaffold_64-1491911889:310169..310773 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1510915933:310169..310773 | TCONS_00071865-exon-scaffold_64-1510915933:310169..310773 | Clytia hemisphaerica | exon |
| TCONS_00071865-exon-scaffold_64-1575043694:310169..310773 | TCONS_00071865-exon-scaffold_64-1575043694:310169..310773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:307622..310773 + |
Blast
The following BLAST results are available for this feature:
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