TCONS_00071864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071864
Unique NameTCONS_00071864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071864 ID=TCONS_00071864|Name=TCONS_00071864|organism=Clytia hemisphaerica|type=transcript|length=2085bp
gaaaaaaggaaaaagcagGTAGCAAAAGAACAACAATTCAAGGCACAGAA
AGATGGGTTCTTCTAACATTGTAACATTCACATTATTGCGATATGGTATC
TTGATATCATTGGTGAGTACTGGAGTTCTCATCACAATGTCTGTGTCAAG
ACAAGATTGGATGCGTGAAGAACTTAAAATGAAAATGGGTCATTTGAGTC
CATTATTTGATATGGCATCCAACATCACTGGTAAAATAGCATCGGTAACT
AAGAATCAGGACCTATTTAGTATGCTTCCTGAAGACTCAACGATCGATAT
AATGGCTCATTTCGGTCTTCGAAAAACCTGCTTGACGATCACTGCCAGTG
GAATGTCAAACCCAGTCCAACTGGTTGTCCCAGAGATGACATGGTGTGTT
AAGAACGACATTTTTGGCGAACCATGGGAATATGGTGTCACTGTGAAGCC
GTTTGTGGAGGTTCTACAAATGCTTGAAGATGAAGCTTCAGCATTAAAAA
CTGCTTATATCTGTATGGCATTGGCATTACTATTTGTTGTTATTGGCTTA
ATCTTTGTTCTTTTGAAAGCCTTCAAATATCCAACAAAATTCATCTTTGG
AAGTTTAATTTGCTGCACCATCGCAAGTGTTTTTATCATATGCGCTCTCG
ATGTTGTACACAATAAATTCCAATTCAAAAGTAGTTACAATCAAGTCAAA
AGCTTTCTCAAATATCGCCAATCGGGCGGAGGTGATCCAAACATTATGGG
TGGTTTCGTTGGAGGAGATATGGGCGGTACGGGCGGAATAGACGGAGGAA
ACTCAAGACGACGTCGAGACGATGGAAGCCCAGGATATAGTGGTCATTAT
ACAACCGATTCCACAATGGGTCGTAGTGGAGGTGTGAGTCCAAGTGGAAT
GATTAACATGGCACTAATCAATCAGATAATGGGAAACTACCAACAAGTTA
CAGCCATTGGTATTCCTGCAGTCATGGAAATGGCTATTAACAGCGAGTTG
AAAGAATCGATTGGATCACCTTTGATTTATGCTGGTTTAGCTTATGGTTA
CATTCTTTTGGTAGGTTTGTTAAGCTGTGTGGAATACATGTTGATTAGAA
GATCGAGCGATGAGCATGATGTCAAGTATCAAAACGTAGCTTTAACTTAG
GAGAAGAAATGGACGATCTAGTcgataaaattttattgaaaatcgtTGGG
TTAGTGTCCGGTATACTGTCCTGTTACTTTTTTGACTTGATTTTGCTGGA
ATTAGACACGAGTAAAAGGAATTAAacccttttttttaaacaaaatacaa
TATTCTTTTGTTGATTGGTACCTGGTATTTATCACGGTTGATTCGATATT
ATGTCGTCTTTATAGCTCACTGGCAAGAAAAGTACTATATATAGAACTAC
TAATTGTACCTTATAAACTATAAACTCTTCATTTTATCTAATCAAATGAT
CTTTGgtgtaaaataaagttttgcTTTTGTTCAGAGGTGATTGTTTTAAT
CAATTTCATTCATTCAACATCAGAAGATCTATGTGAAGCTTTTCAAAGGC
ATTAAAACGAGACAGTATTTTACAAGCAAAGATACTGCTCCTAATTTTGG
CGGTAATCAATTTTGGTGGTAATCGCAATTTTcgctagactatgctatag
tctaagacaaataaTTATCTAAattctaagaaataagcccaaagccaAAG
AAAATTTGCAAGTCaagtttttttgccaaaaagagtttacagtcggtaga
gtttggtaatcttttttcgaaactctcccgccgattttttttctccgTGC
ATCGCCTTAACGCCAAACGGCCATATTtccccgcctttactatcaatCAC
TGTAtaggacgataacatcgtctaaattttcgcaaatctataatttttga
agttttaggTTCCTTATTGTTTAGCCAGTACCTTCCTAGTCTTGCCTAAT
CAATTATCAAATTCCTTTTGAAATTGCCCACCCAAACGGTAAACGGGAAG
TCAGACtcagtgaaaattccaagcacttttctgTGGCCGTTATACGGCCA
gaaaactcaattttaaattgagttttgaaactcaa
Run BLAST on NCBI

transcript from alignment at scaffold_64:296100..298770+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071864 ID=TCONS_00071864|Name=TCONS_00071864|organism=Clytia hemisphaerica|type=transcript|length=2671bp|location=Sequence derived from alignment at scaffold_64:296100..298770+ (Clytia hemisphaerica)
gaaaaaaggaaaaagcagGTAGCAAAAGAACAACAATTCAAGGCACAGAA
AGATGGGTTCTTCTAACATTGTAACATTCACATTATTGCGATATGGTATC
TTGATATCATTGGTGAGTACTGGAGTTCTCATCACAATGTCTGTGTCAAG
ACAAGATTGGATGCGTGAAGAACTTAAAATGAAAATGGGTCATTTGAGTC
CATTATTTGATATGGCATCCAACATCACTGGTAAAATAGCATCGGTAACT
AAGAATCAGGACCTATTTAGTATGCTTCCTGAAGACTCAACGATCGATAT
AATGGCTCATTTCGGTCTTCGAAAAACCTGCTTGACGATCACTGCCAGTG
GAATGTCAAACCCAGTCCAACTGGTTGTCCCAGAGATGACATGGTGTGTT
AAGAACGACATTTTTGGCGAACCATGGGAATATGGTGTCACTGTGAAGCC
GTTTGTGGAGGTTCTACAAATGCTTGAAGATGAAGCTTCAGGTCAGTAAA
ATCAGTCGATGTTTTTCAATTCTATCAGGTTGAATGAATTGTAAAATATT
TGAggcataaaaataaaacttttaagctACGAGAGTAATATAACGTCAAT
TCTGCATTATCACAGACCAAATATAATGTTTGTCTGCCTTTAGTCCTTGT
TAAAAAAAGAAGTCTCCAATACATTTCGTCTAGAATAATTACTattcaaa
atctaaattttaagCTGTTAATCAAAGCATTTTCTTAGTCTGTCTTAGTA
CTGATTACTCAGAATTGATAAATTCTTTACTTCTTTTCAGCATTAAAAAC
TGCTTATATCTGTATGGCATTGGCATTACTATTTGTTGTTATTGGCTTAA
TCTTTGTTCTTTTGAAAGCCTTCAAATATCCAACAAAATTCATCTTTGGA
AGTTTAATTTGCTGCACCATCGCAAGTAAGTATATTTCATACTGTTCCAA
AAAAGTCTGGTTACGAGATAGGTGAAAGCTTTCATTTTAGAGTGGTCTTA
GTAAGAAAATTTATTGGTCAGAAATAAGAATGTTCGTCACAAAATATTGC
TTTgagaataaaaatttaaatctttaaCATGACAAAAATTCACTCAATAT
ATGAGGTTCGCCGTGATATCATATGTCAATTCTTTGACATACTACAGTTT
AATGATCTAGAAGATACGTGAAAGTACCCTATGTGGACAAGAATATCTCT
ATTTTTCTTCAGGTGTTTTTATCATATGCGCTCTCGATGTTGTACACAAT
AAATTCCAATTCAAAAGTAGTTACAATCAAGTCAAAAGCTTTCTCAAATA
TCGCCAATCGGGCGGAGGTGATCCAAACATTATGGGTGGTTTCGTTGGAG
GAGATATGGGCGGTACGGGCGGAATAGACGGAGGAAACTCAAGACGACGT
CGAGACGATGGAAGCCCAGGATATAGTGGTCATTATACAACCGATTCCAC
AATGGGTCGTAGTGGAGGTGTGAGTCCAAGTGGAATGATTAACATGGCAC
TAATCAATCAGATAATGGGAAACTACCAACAAGTTACAGCCATTGGTATT
CCTGCAGTCATGGAAATGGCTATTAACAGCGAGTTGAAAGAATCGATTGG
ATCACCTTTGATTTATGCTGGTTTAGCTTATGGTTACATTCTTTTGGTAG
GTTTGTTAAGCTGTGTGGAATACATGTTGATTAGAAGATCGAGCGATGAG
CATGATGTCAAGTATCAAAACGTAGCTTTAACTTAGGAGAAGAAATGGAC
GATCTAGTcgataaaattttattgaaaatcgtTGGGTTAGTGTCCGGTAT
ACTGTCCTGTTACTTTTTTGACTTGATTTTGCTGGAATTAGACACGAGTA
AAAGGAATTAAacccttttttttaaacaaaatacaaTATTCTTTTGTTGA
TTGGTACCTGGTATTTATCACGGTTGATTCGATATTATGTCGTCTTTATA
GCTCACTGGCAAGAAAAGTACTATATATAGAACTACTAATTGTACCTTAT
AAACTATAAACTCTTCATTTTATCTAATCAAATGATCTTTGgtgtaaaat
aaagttttgcTTTTGTTCAGAGGTGATTGTTTTAATCAATTTCATTCATT
CAACATCAGAAGATCTATGTGAAGCTTTTCAAAGGCATTAAAACGAGACA
GTATTTTACAAGCAAAGATACTGCTCCTAATTTTGGCGGTAATCAATTTT
GGTGGTAATCGCAATTTTcgctagactatgctatagtctaagacaaataa
TTATCTAAattctaagaaataagcccaaagccaAAGAAAATTTGCAAGTC
aagtttttttgccaaaaagagtttacagtcggtagagtttggtaatcttt
tttcgaaactctcccgccgattttttttctccgTGCATCGCCTTAACGCC
AAACGGCCATATTtccccgcctttactatcaatCACTGTAtaggacgata
acatcgtctaaattttcgcaaatctataatttttgaagttttaggTTCCT
TATTGTTTAGCCAGTACCTTCCTAGTCTTGCCTAATCAATTATCAAATTC
CTTTTGAAATTGCCCACCCAAACGGTAAACGGGAAGTCAGACtcagtgaa
aattccaagcacttttctgTGGCCGTTATACGGCCAgaaaactcaatttt
aaattgagttttgaaactcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044610XLOC_044610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071864-exon-scaffold_64-1491911889:296100..296590TCONS_00071864-exon-scaffold_64-1491911889:296100..296590Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1510915933:296100..296590TCONS_00071864-exon-scaffold_64-1510915933:296100..296590Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1575043694:296100..296590TCONS_00071864-exon-scaffold_64-1575043694:296100..296590Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1491911889:296890..297024TCONS_00071864-exon-scaffold_64-1491911889:296890..297024Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1510915933:296890..297024TCONS_00071864-exon-scaffold_64-1510915933:296890..297024Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1575043694:296890..297024TCONS_00071864-exon-scaffold_64-1575043694:296890..297024Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1491911889:297312..298770TCONS_00071864-exon-scaffold_64-1491911889:297312..298770Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1510915933:297312..298770TCONS_00071864-exon-scaffold_64-1510915933:297312..298770Clytia hemisphaericaexon
TCONS_00071864-exon-scaffold_64-1575043694:297312..298770TCONS_00071864-exon-scaffold_64-1575043694:297312..298770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:296100..298770 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.4151	54.0135	50.5266	47.8924	6.69993	4.75882	8.53428	9.97561	8.7951	9.48953	11.4166	8.92553	6.67981	6.90575	6.84079	7.15477	8.89636	8.71604	1.91632	2.33212	12.1483	12.7221	21.4083	17.7897	9.12389	11.1432	3.80104	2.81106	12.5913	12.4688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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