TCONS_00071863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071863
Unique NameTCONS_00071863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071863 ID=TCONS_00071863|Name=TCONS_00071863|organism=Clytia hemisphaerica|type=transcript|length=437bp
GCTCTAGCTACGGGGTGCACGTGGGGATATGATATGATATATGATATGGA
GACACAGTCTTTTGCTTTGGCTGTTTGGTAAATCCCTTCTGCTTCATGTA
GCAAACCTTACGAAAATTCCTCAAGTCAAGTATTGTCTTTGatggcggat
ggaaagccGAAAAGGTCTATCATATGTCACCAAAATTCATGCCATCAAAA
TCCTGGCCACCATCAAAATCCTGGCCACCATCAAAATCAACACCAGGAAC
AACCTAGCGCTTTACCACCACCACAAATATGATTGATACTGCCACGACCC
CAACCACAACCTCAGTATGCACAACTACCAATAATGATTTATCAGATCAA
TATATGATTTATTTTTACCagttaggcgagaccaatttaatttattaTTC
TACGGGCAGATCTTTAGAAAagtatgggtcggtcggt
Run BLAST on NCBI

transcript from alignment at scaffold_64:287147..294076+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071863 ID=TCONS_00071863|Name=TCONS_00071863|organism=Clytia hemisphaerica|type=transcript|length=6930bp|location=Sequence derived from alignment at scaffold_64:287147..294076+ (Clytia hemisphaerica)
GCTCTAGCTACGGGGTGCACGTGGGGATATGATATGATATATGATATGGA
GACACAGTCTTTTGCTTTGGCTGTTTGGTAAATCCCTTCTGCTTCATGTA
GCAAACCTTACGAAAATTCCTCAAGTCAAGTATTGTCTTTGGTATGTACG
TATTCTTATTGGTTCTCTACTACTAGGTCAGGGTGGTGTTTTCTGACACA
CTTGGCAACCACCAAGGCTTCTAGGTTCCCCATATTATTGCAATTTATAA
GAATAATCTATTTTTTTGTAGCATGTAGGGGATTATCTCCTGCTgcgttg
cagcgaaaatatattcaattcaattcaatttgattcAATTCATCCATCAA
GTTTGAAAGCTTTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTAAAGTGCGACaaatacaa
cctgaaaaaaacgttttccaaacgttgtgaaaaacgttttttaaacgttt
tttaaacgtttttttgccgGCTGGGTTATTGCAATTTATAAGAATAATCT
ATTTTTTTGTAGCATGTAGGGGATTATCTCCTGCTgcgttgcagcgaaaa
tatattcaactCAATTCAATTTGATTCAATTCATCCATCAAGTTTGAAAG
CTTTAggccagacccgatcaatcgaacttgtcgaaccaatcgaacaatcg
aactaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNggtttcggttcgatcagttcgataaaccaa
ttttgttcgacaagtttgtgccgctccgccaccgtatattagcttcttta
caaagccaaattcggaatgttaATCGGAAAATTACTTCGGTAGctgatta
cacacttttcctgtatcctttttaGCGCCAGAAGAGGTGGTTTATTGGGG
CGGGCAcagtattccgccactcggccgcgtgcgaaatcgcaacagagggg
ctacggacttttTTCCGGATAGTACAAATATCCGAGTACAGTAAACGTCA
AGCTGTCCAGGAActgtcgaaattggcaatcgcgtgccagaaaaaaagtt
tttgcaagcgagggaagatatgagtatttttaatatcatcgaactaatcg
aactttttactgaccaaactaatcgaactgctgttgcttcaaaaattgtg
agtgttcgattaggttcgattaatttttttaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNagtttcgattaatttttttaatcgaactttaa
tcgttcgatagagttcgattagttcgattgttcgattgattcgacaagtt
cgattgatcgggtctggtttaGGGGAAAAGGGACTTTATTTAAACAGTGA
TTCCCGAATGGTGatatttaaaaaacttaaaacatcCTTACAAAACTTGT
CCTTTTGATTTCTCATACATTCATTTCTCAAACATTTCTTTATGCGCTCA
CTTCCATAATAATTTATGTAATAGTACTTTCGGTCAGCTGGGAtctgcca
tattgaattgtatgtaaaaattatggtggccgaattgccgtggtgaaatt
cccttagaaagtatatatgcaaaacatatgcaaaaagaaagtattaataa
aacttacatgcataaatggcattatattaaagtgtaatcttgtagaagaa
agattaaatttgcttcttttgaaatctagaaatatataaTCAAAtttgct
catctcttagaacaagcacttcaaaaaaccataacattagacatataaac
tcaaactgaaaaatcacccgcgaaggtacaaaaataatccttattcggct
gacagtaaattattctcctgggaatagagctgccaaacaatcaaatcaaa
acattgatctgaacccgctgaatgtgtgaagtcataattactgctttcag
tttgcgtgttttgaaagtttgatgtgtgtactgtcttggtggaatttttt
aatggcatgaaaacagaatatgcaatgtctttgagaacaaatttctaaaa
ggcttttgttgttctgtaaatatttctttttggNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGGTTCTCGTGATTA
TTGGAAGGATAAATTTGGCCAGGCTCAGTCCCTGATAAGGGAGATGGCAG
AAAGAAGCATCCAACTGGAGGAAATTCCTGGCTTTCTGACAATAAAAAAG
GGTTAAGCCACATGAAGAAAAGAAAGCAACCACAACTACAAGGGTGACTC
AGGTACACGGCTTGACAAGGGCTAAAGAtgtagcaaccaaggtcaaagAA
ATCAGGGATGAGAAACTGAAGAAggaaactgaaaaagaagaagcaaAGAA
GAGAGAGTAGATCAGAGAAACATTCATGAAATGCAAAACTCAATGTACCT
GTTTGCAACAAAAATGCTTGGCTTTAGGATTAAAGCAGTGCCCAGGAGTG
CCAAGGTGCTTTAGGATTAAAGCAGTGCACTATTGTATTATCGTTCAGTT
TGCAGCAAAGCAAGCTGTAAAGTTAATGGAATCAAACCACTGATGACATT
ACCAGCCAAACAACATTCAATCTCTAAACGATTGTTTGAGGAGGATTCAT
CATCAGGAAGGGGAGGGATTTGAATCTGAAGAAAGCGAAATGTCCGAAAA
TgaaactgatgatgaaagtgATATCCAAAAACTCAAGAATTGCTGGAAAG
GCCTGGCATCGCCAACAAAAGAGACTGAAGTCACTGGTAGATGGTATGCT
GCCATCTACActatcaagaaaacaaaaaggttgtATATTGGTCGTTTGTT
GAATAGATTCTTAAAAGATGAAGATGGCGCTGTTAACTCACTTCAGTTGC
ACTGTCTAAAGCCTAAAGTTGGGAGTGGCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGGTCGTTTGTTGAAGAGATTCTTAAAAGA
TGAAGATGGCGCTGTTAACTCACTTCAGTTGCACTGTCTAAAGCCTAAAG
TTGGGAGTGGCAAGGTTCTTGAAGACACCCCAGACCATCTTCCAGATACA
AGCATTTTCCCAGTTCATGACATCATAGATGGGCCATTAAAGGTCATTCC
CATTtgaggaaaaaaatgaacattccaGATCATGATTCAATAGAAAATAT
GTTTAACAAAGAAGTATCAAGACTAAACCGTCTAGTTTTAGTAAATATGA
TGTAATAATCCATActtttttttaagcttttgagtTATATATGCTAATCA
TTATTGTAGTATTTTTgcatagtttttcttgaaaatgtgtCACAAAATTG
TATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTAAAactt
gcaatttttctcatttgtacctcaaaacccacaatTTAAAAGTGAGTTTT
TTGAGAGCAATTAAAATAAACACATTGCTTACAGCACTTAGAACTTATTT
CCTACATTTGTGTTATGTCTAGAGGTaatagaaaacgaaagattGATAGG
TTAGTCAATAGCATCAAGTGACttatctgaccatattttgaaaaaaatca
aaaattttgaagttagATTTCTAGCGTTAAATCTTGATAAAACATTTTTA
CCCAACCAATAATgctcaattttgttttaattaataAAGAAACTATTATA
CCAACATAATCTTAAAAAAGTTAtgctaataaaaacattttagatttttc
taaaactcctgaaatgaaattgttggttttgaggtacctgtgggttttgt
ggtacatatctgtatgttttgcatattttccaactaaatccaagcACGGC
TTTtttgttcctctatttttgcatacaattcaagatggcggatggaaagc
cGAAAAGGTCTATCATATGTCACCAAAATTCATGCCATCAAAATCCTGGC
CACCATCAAAATCCTGGCCACCATCAAAATCAACACCAGGAACAACCTAG
CGCTTTACCACCACCACAAATATGATTGATACTGCCACGACCCCAACCAC
AACCTCAGTATGCACAACTACCAATAATGATTTATCAGATCAATATATGA
TTTATTTTTACCagttaggcgagaccaatttaatttattaTTCTACGGGC
AGATCTTTAGAAAagtatgggtcggtcggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044611XLOC_044611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071863-exon-scaffold_64-1491911889:287147..287287TCONS_00071863-exon-scaffold_64-1491911889:287147..287287Clytia hemisphaericaexon
TCONS_00071863-exon-scaffold_64-1510915933:287147..287287TCONS_00071863-exon-scaffold_64-1510915933:287147..287287Clytia hemisphaericaexon
TCONS_00071863-exon-scaffold_64-1575043694:287147..287287TCONS_00071863-exon-scaffold_64-1575043694:287147..287287Clytia hemisphaericaexon
TCONS_00071863-exon-scaffold_64-1491911889:293781..294076TCONS_00071863-exon-scaffold_64-1491911889:293781..294076Clytia hemisphaericaexon
TCONS_00071863-exon-scaffold_64-1510915933:293781..294076TCONS_00071863-exon-scaffold_64-1510915933:293781..294076Clytia hemisphaericaexon
TCONS_00071863-exon-scaffold_64-1575043694:293781..294076TCONS_00071863-exon-scaffold_64-1575043694:293781..294076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:287147..294076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.36766	7.15017	11.7075	8.38602	15.5937	11.7158	9.56773	10.3267	8.48817	13.3209	13.2758	12.7514	11.9116	12.7536	17.0649	17.2528	7.69707	6.01186	2.26297	4.30281	5.52778	3.89957	9.82172	8.16343	1.51354	4.74505	3.12521	3.73432	7.02647	5.81724
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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