TCONS_00071860 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071860
Unique NameTCONS_00071860
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071860 ID=TCONS_00071860|Name=TCONS_00071860|organism=Clytia hemisphaerica|type=transcript|length=1426bp
ATTTTTCTATCAATTGGGTAATAATTTTTCAACCTTTTCTCCTCCAAAAc
agagaaaaaaggaaaaagcagAGAGCAAAAGAACAACAATTCAAGGACAG
AGAAATGGGTTCTTCTAACATTGTAACATTTACATTATTGCGATATGGTA
TCTTAACATCATTGGTGATTGCTGGAGCTCTCATCACAATGTCTGTCTCA
AGACAAGATTGGATGCGTGAAGAACTTAAAATGAAAATGCATCATTTACG
TCCTTTATTTGATATGGCATCCAACATCACTGGCAAAATAGCATCGGTAA
CTAAGAATCAGGATCTATTTAGTATACTTCCTGAAGACTCAACAATCGAT
GTAATGGCTCATTTTGGTCTTCGAAAAACCTGCTTGACGCTCACCGCCAG
TGGAATGTCAAACCCAGTCCAACTGGTTGTCCCAGAGATGACATGGTGTG
TTAAGAACGACATTTTTGGCGAACCATGGGATTATGGTGTCACTGTGAAG
CCGTTTGTGGAGGTTCTACAAATGCTTGAAGATGAAGCTTCAGCATTGAA
AACTGCTTATATCTGTATGGCATTGGCTTTACTATTTGTGGTTATTGGCT
tgatctttgttgttttgaaagcTTTCAAATATCCAACGAAATTCCTCTTT
GGAAGTTTAATTTGCTGCATCATCGCGTgtGTTTTTATCATATCCGCTTT
GGGTGTTGTGCACAATAAATTCGAATTCAAAAGTAGCTACAATCAAGTCA
AACGTTTTCTCAAATATCGCCAATCGAGTGGAGGTCCAAACATTATGGGT
GGTTTCAATGGAGGAGATATGGGCGGTATGGGTGGAATAGATGGAGGAAA
CTCAAGACGACGTCGAGACGATGGAAGCCCAGGATATAGTGGTCATTATA
CAACCGATTCCACAATGGGTCGTAGTGGAGGTGTGAGTCCAAGGGGAATG
ATTAACATGGCACTAATCAATCAGATAATGGGAAACTACCAACAAGTTAC
AGCCATTGGTATTCCTGCAGTCATGGAAATGGCTATTAACAGCGAGTTGA
AAGAATCGATTGGATCACCTTTGATTTATGCTGGTTTAGCTTATGGTTAC
ATTCTTTTGGTAGGTTTGTTAAGCTGTGTGGAATACATGTTGATTAGAAG
ATCGAGCGATGAGCATGATGTCAAGTATCAAAACGTAGCTTTAACTTAGG
AGAAGAAATGGACGATCTAGTcgataaaattttattgaaaatcgtTGGGT
TAGTGTCCGGTATACTGTCCTGTTACTTTTTTGACTTGATTTTGCTGGAA
TTAGACACGAGTAAAAGGAATTAAacccttttttttaaacaaaatacaaT
ATTCTTTTGTTGATTGGTACCTGGTATTTATCACGGTTGATTCGATATTA
TGTCGTCTTTATAGCTCACTGGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_64:274181..277894+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071860 ID=TCONS_00071860|Name=TCONS_00071860|organism=Clytia hemisphaerica|type=transcript|length=3714bp|location=Sequence derived from alignment at scaffold_64:274181..277894+ (Clytia hemisphaerica)
ATTTTTCTATCAATTGGGTAATAATTTTTCAACCTTTTCTCCTCCAAAAc
agagaaaaaaggaaaaagcagAGAGCAAAAGAACAACAATTCAAGGACAG
AGAAATGGGTTCTTCTAACATTGTAACATTTACATTATTGCGATATGGTA
TCTTAACATCATTGGTGATTGCTGGAGCTCTCATCACAATGTCTGTCTCA
AGACAAGATTGGATGCGTGAAGAACTTAAAATGAAAATGCATCATTTACG
TCCTTTATTTGATATGGCATCCAACATCACTGGCAAAATAGCATCGGTAA
CTAAGAATCAGGATCTATTTAGTATACTTCCTGAAGACTCAACAATCGAT
GTAATGGCTCATTTTGGTCTTCGAAAAACCTGCTTGACGCTCACCGCCAG
TGGAATGTCAAACCCAGTCCAACTGGTTGTCCCAGAGATGACATGGTGTG
TTAAGAACGACATTTTTGGCGAACCATGGGATTATGGTGTCACTGTGAAG
CCGTTTGTGGAGGTTCTACAAATGCTTGAAGATGAAGCTTCAGGTCAGTA
AAATCAGTCGATGTTTTTCAATTCTATCAGGTTGAATGAATTGTAAAATA
TTTGAGGCATCATAAGGATAAAACTTTTAAACTGCGAGAGTAATACAACG
TCAACTCTGCATTATCGTAGACCAAATATAATATTTCCAGCCTTCAGTTC
TTGCTAAAAAAGAAGTCTCCGATACATTCGTCTAGGATAATTACGgttca
aaatccaaattttaagCTGTTAATCAAAGCTTTTATTAGTacaaatcatg
aattttttttacttcttttcagCATTGAAAACTGCTTATATCTGTATGGC
ATTGGCTTTACTATTTGTGGTTATTGGCTtgatctttgttgttttgaaag
cTTTCAAATATCCAACGAAATTCCTCTTTGGAAGTTTAATTTGCTGCATC
ATCGCGTGTGAGTATATTTCATACTGCTCCAAAAAATCGctttaaccctt
agaagccagaatacgtatatatacgttttgaaaaggccattttaccgata
cacagtcttttggtcataactcgtgaccacttgagattcagagaaaaaaa
atgtgctattttttgtagctgagagaaagagctttccaacgataccaaag
ttgatacctgaatcgtttgtcctggtccaGAAATTGNNNNNNNNNNNNNN
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ggcttctaaaggttaagGGATAGGGGAAAGGTTTCATTTTAGAGAAATAA
GTAAGAAATAAATTTAATGGTCAGAAATAAGAATCTTCGTCACAAAATAT
TGCTTTgagaataaaaattgaaatctttaACATTGCGAAAATTCACTCAA
ATGATATGAGGCTCGGCATGATATCACGTATAATTCCTTAACATACTACA
GTTTCAATGATCTTAGAAGTTACATGAAAGCACCCTATGTTGATAATatc
ctctatttttctttaggtGTTTTTATCATATCCGCTTTGGGTGTTGTGCA
CAATAAATTCGAATTCAAAAGTAGCTACAATCAAGTCAAACGTTTTCTCA
AATATCGCCAATCGAGTGGAGGTCCAAACATTATGGGTGGTTTCAATGGA
GGAGATATGGGCGGTATGGGTGGAATAGATGGAGGAAACTCAAGACGACG
TCGAGACGATGGAAGCCCAGGATATAGTGGTCATTATACAACCGATTCCA
CAATGGGTCGTAGTGGAGGTGTGAGTCCAAGGGGAATGATTAACATGGCA
CTAATCAATCAGATAATGGGAAACTACCAACAAGTTACAGCCATTGGTAT
TCCTGCAGTCATGGAAATGGCTATTAACAGCGAGTTGAAAGAATCGATTG
GATCACCTTTGATTTATGCTGGTTTAGCTTATGGTTACATTCTTTTGGTA
GGTTTGTTAAGCTGTGTGGAATACATGTTGATTAGAAGATCGAGCGATGA
GCATGATGTCAAGTATCAAAACGTAGCTTTAACTTAGGAGAAGAAATGGA
CGATCTAGTcgataaaattttattgaaaatcgtTGGGTTAGTGTCCGGTA
TACTGTCCTGTTACTTTTTTGACTTGATTTTGCTGGAATTAGACACGAGT
AAAAGGAATTAAacccttttttttaaacaaaatacaaTATTCTTTTGTTG
ATTGGTACCTGGTATTTATCACGGTTGATTCGATATTATGTCGTCTTTAT
AGCTCACTGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044610XLOC_044610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071860-exon-scaffold_64-1491911889:274181..274723TCONS_00071860-exon-scaffold_64-1491911889:274181..274723Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1510915933:274181..274723TCONS_00071860-exon-scaffold_64-1510915933:274181..274723Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1575043694:274181..274723TCONS_00071860-exon-scaffold_64-1575043694:274181..274723Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1491911889:275003..275137TCONS_00071860-exon-scaffold_64-1491911889:275003..275137Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1510915933:275003..275137TCONS_00071860-exon-scaffold_64-1510915933:275003..275137Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1575043694:275003..275137TCONS_00071860-exon-scaffold_64-1575043694:275003..275137Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1491911889:277147..277894TCONS_00071860-exon-scaffold_64-1491911889:277147..277894Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1510915933:277147..277894TCONS_00071860-exon-scaffold_64-1510915933:277147..277894Clytia hemisphaericaexon
TCONS_00071860-exon-scaffold_64-1575043694:277147..277894TCONS_00071860-exon-scaffold_64-1575043694:277147..277894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_64supercontigscaffold_64:274181..277894 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3806	11.0492	8.81665	8.38204	2.77858	1.70437	12.0808	14.2729	23.4584	28.4488	32.4627	22.6753	6.89804	7.41334	2.96249	3.32396	15.8469	11.8846	3.64666	5.06885	98.8722	99.239	6.68946	7.72086	33.5348	31.202	2.21131	1.66981	2.88148	2.99685
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071860 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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