|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071857 ID=TCONS_00071857|Name=TCONS_00071857|organism=Clytia hemisphaerica|type=transcript|length=12901bp transcript from alignment at scaffold_64:231425..271112+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00071857 ID=TCONS_00071857|Name=TCONS_00071857|organism=Clytia hemisphaerica|type=transcript|length=39688bp|location=Sequence derived from alignment at scaffold_64:231425..271112+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00071857 vs. Swiss-Prot (Human)
Match: KMT2C (Histone-lysine N-methyltransferase 2C OS=Homo sapiens GN=KMT2C PE=1 SV=3) HSP 1 Score: 313.923 bits (803), Expect = 7.450e-85 Identity = 166/365 (45.48%), Postives = 236/365 (64.66%), Query Frame = 3
Query: 11481 IFQELGHVPLHLLEKFSDTENIYPIGFETISLFWDYENVRQRRYYTCTITDEKETPYFKVKVHSKTGDPKEFSNTAPKGAWEEEILKSIQKERGDGNLLKFFPEFINGQSLFGLVECTIKRMMESLPGIPTIEKYNFRFGRTPILIKELPLALNPSGCIRSERFHKHRIRPLAMRTASDHSLTPTPTAVDSSLNNDSWLSYPQRTAQILGTKTGQYRKMRQDWRNTVILGRSRIQGLGLFVKKDVEENTFMIEYIGSLIRNEVANRLEAHYERHNRGIYMFRIDRDAVVDATMAGGPARYINHSCDPNCVAXXXXXXXXXXXXXXXXXXXXXXXXLTYDYKFDLEDDSMKISCLCGSTNCRKWMN 12575
IF +G + ++ F + ++P+G+E L+W +R Y C+I ++ P F +++ + + S+ +PKG W++ IL+ + R +L+ FP ++ G+ LFGL + R+ ESLPG+ E Y FR+GR P++ ELPLA+NP+GC RSE ++ +R H+L T T+ L+ P + Q + +K+ QYRKM+ +W++ V L RSRIQGLGL+ +D+E++T +IEYIG++IRNEVANR E YE NRG+YMFR+D D V+DAT+ GGPARYINHSC PNCVAE+++ E +III SSRRI+KGEEL YDYKFD EDD KI C CG+ NCRKWMN
Sbjct: 4554 IFHTIGQLLPQQMQAFHSPKALFPVGYEASRLYWSTRYANRRCRYLCSIEEKDGRPVFVIRIVEQGHEDLVLSDISPKGVWDK-ILEPVACVRKKSEMLQLFPAYLKGEDLFGLTVSAVARIAESLPGVEACENYTFRYGRNPLM--ELPLAVNPTGCARSEPKMSAHVKRFVLRP---HTLNSTSTSKSFQSTVTGELNAP-YSKQFVHSKSSQYRKMKTEWKSNVYLARSRIQGLGLYAARDIEKHTMVIEYIGTIIRNEVANRKEKLYESQNRGVYMFRMDNDHVIDATLTGGPARYINHSCAPNCVAEVVTFERGHKIIISSSRRIQKGEELCYDYKFDFEDDQHKIPCHCGAVNCRKWMN 4911 HSP 2 Score: 269.24 bits (687), Expect = 2.856e-71 Identity = 144/418 (34.45%), Postives = 222/418 (53.11%), Query Frame = 2
Query: 212 MNEESSDAATYSPAKAEESSEICALCNCGQEMALILGEITKYPVASSTLKKIK-----------------EKMKTEMDRNINSEVSSSDNQKNIKEKSFVXXXXXXXDNDFDLTLPPDMTTFGTANVQDFNDIIDSKGKNLFAHHCCAAWSAGVSQNDSCDLENVDKAVAKALTKKCSHCDRYGASVECQVHRCTKIYHYACCASTGAFQDINSMNLLCPGHLDRTEKLTNADPSCDACGKTDNLDLQLFCTSCGHHFHSYCVDMHIPITPVVRMGWQCSYCKLCQGCKQPGDEDRMLCCDNCDKGFHTYCLNPPITSVPKSAWKCISCRKCEDCGSTRPGGGPSCKWHNNFSLCDRCYQQRKKGQCCPVCNRAVRLCSSSILMQCSQCFKCVHRDCDPDG-------IEDNYICVEC 1393
++EES+++ +A+ S ++CA C CG++ +L G++ ++ + + + EKM+ R + Q+NI S V + +D L +++ G + D + DS G +AHH C WS GV Q + L NVDKAV T++C+ C GA+++C +CT++YHY C A G FQD + + LLCP H+D+ + + D +C C +L Q FCT+CG H+H C+D I +TP+ R GWQC CK+CQ CKQ G++ +ML CD CDKG+HT+CL P + SVP + WKC +CR C +CG+ S +WH+N +CD CYQQ+ CP C + ++ C+ C + VH +CD +++ YIC+ C
Sbjct: 112 VSEESANSLVSVGVEAKISEQLCAFCYCGEKSSLGQGDLKQFRITPGFILPWRNQPSNKKDIDDNSNGTYEKMQNSAPRKQRGQRKERSPQQNIV--SCVSVSTQTASDDQAGKLWDELSLVGLPDAIDIQALFDSTG-TCWAHHRCVEWSLGVCQMEEPLLVNVDKAVVSGSTERCAFCKHLGATIKCCEEKCTQMYHYPCAAGAGTFQDFSHIFLLCPEHIDQAPERSKEDANCAVCDSPGDLLDQFFCTTCGQHYHGMCLD--IAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRS-----SSQWHHNCLICDNCYQQQDN--LCPFCGKCYHPELQKDMLHCNMCKRWVHLECDKPTDHELDTQLKEEYICMYC 517 HSP 3 Score: 266.544 bits (680), Expect = 1.578e-70 Identity = 110/224 (49.11%), Postives = 149/224 (66.52%), Query Frame = 2
Query: 2006 LHSTVLIVSNKDEFTLKQDVCMCCGSFGKGREGYLIGCVQCGQCFHPYCVNVKVNEVILSRGWRCIDCTVCEGCGLNADEAHLLLCDICDVSFHTYCLQPPLEEVPVGGWKCQWCAVCEDCGVKEPGYGCSWMGNYSQCGQCSSEQYCSICSYPYEPNNLVIQCEKCDRWAHAECDGLNSESDAKLACTMTYHCVHCRPKTKHLGI------YSSLKSSVITKV 2659
+H+TV++ S+ D+FTL QD+C+ CGSFG+G EG L+ C QCGQC+HPYCV++K+ +V+LS+GWRC++CTVCE CG D LLLCD CD+S+HTYCL PPL+ VP GGWKC+WC C CG G C W NY+QC C+S C +C Y +L++QC +CDRW HA C LN+E + + + + C CRP + SSL + ++TKV
Sbjct: 940 MHNTVVLFSSSDKFTLNQDMCVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGATSAGLRCEWQNNYTQCAPCASLSSCPVCYRNYREEDLILQCRQCDRWMHAVCQNLNTEEEVENVADIGFDCSMCRPYMPASNVPSSDCCESSLVAQIVTKV 1163 HSP 4 Score: 179.104 bits (453), Expect = 4.482e-44 Identity = 99/250 (39.60%), Postives = 136/250 (54.40%), Query Frame = 2
Query: 10730 WRK-RWKRWQFPFNADKKTKRKRLEREDLYKLMHKYDVRLKLPDDV-KDNRVCMLCNLVGDGETAQASRLLNYDVDQWVHLNCALWSNEVYEALNGGLHKVDIAKKYASQIKCAHCGKFGASITCSHTFGPQQRLHCEKVFXTCSHTFGPQQRLHCEKVFHFCCALQAQCKFYKDKTILCPQHKMFGVPSEELRNFTVRRKVYIERDVTKQIAKMLQMNSDLEKKEYTFRVGNLIFQELGHVPLHLLEKF 11473
WR +WK+W K T + E E + + + K LK PD V KD R C C+ GDG T +RLLN D+D WVHLNCALWS EVYE G L V++A + Q+KC C K GA+ C R C ++HF CA++AQC F+KDKT+LCP HK G+ +EL F V R+VY++RD +QIA ++Q ++++TFRVG+LIF +G + ++ F
Sbjct: 4352 WRGMKWKKWSIHIVIPKGTFKPPCEDE-IDEFLKKLGTSLK-PDPVPKDYRKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAGALINVELALRRGLQMKCVFCHKTGATSGC--------------------------HRFRCTNIYHFTCAIKAQCMFFKDKTMLCPMHKPKGIHEQELSYFAVFRRVYVQRDEVRQIASIVQRG----ERDHTFRVGSLIFHTIGQLLPQQMQAF 4569 HSP 5 Score: 124.79 bits (312), Expect = 1.067e-27 Identity = 60/149 (40.27%), Postives = 83/149 (55.70%), Query Frame = 2
Query: 905 LFCTSCGHHFHSYCVDMHIPITPVVRMGWQCSYCKLCQGCKQPGDEDRMLCCDNCDKGFHTYCLNPPITSVPKSAWKCISCRKCEDCGSTRPGGGPSCKWHNNFSLCDRCYQQRKKGQCCPVCNRAVRLCSSSILMQCSQCFKCVHRDC 1351
L C+ CG +H YCV + I V+ GW+C C +C+ C + D R+L CD+CD +HTYCL+PP+ +VPK WKC C C CG+T G C+W NN++ C C CPVC R R +++QC QC + +H C
Sbjct: 975 LACSQCGQCYHPYCVSIKI-TKVVLSKGWRCLECTVCEACGKATDPGRLLLCDDCDISYHTYCLDPPLQTVPKGGWKCKWCVWCRHCGAT--SAGLRCEWQNNYTQCAPCASL----SSCPVCYRNYR--EEDLILQCRQCDRWMHAVC 1114 HSP 6 Score: 122.479 bits (306), Expect = 5.602e-27 Identity = 66/191 (34.55%), Postives = 100/191 (52.36%), Query Frame = 2
Query: 2066 CMCCGSFGKGREGYLIGCVQCGQCFHPYCVNVKVNEVILSRGWRCIDCTVCEGCGLNADEAHLLLCDICDVSFHTYCLQPPLEEVPVGGWKCQWCAVCEDCGVKEPGYGCSWMGNYSQCGQCSSEQ-----YCSICSYPYEPNNLVIQCEKCDRWAHAECDG-LNSESDAKLACTMTYHCVHCRPKTKHLG 2620
C C S G + + C CGQ +H C+++ V + + GW+C +C VC+ C + +++ +L+CD CD +HT+CLQP ++ VP GWKC+ C +C +CG + W N C C +Q +C C +P E ++ C C RW H ECD + E D +L Y C++C KHLG
Sbjct: 344 CAVCDSPGDLLDQFF--CTTCGQHYHGMCLDIAVTPLKRA-GWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIECGTRS---SSQWHHNCLICDNCYQQQDNLCPFCGKCYHP-ELQKDMLHCNMCKRWVHLECDKPTDHELDTQLK--EEYICMYC----KHLG 521 The following BLAST results are available for this feature:
BLAST of TCONS_00071857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.