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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071841 ID=TCONS_00071841|Name=TCONS_00071841|organism=Clytia hemisphaerica|type=transcript|length=1202bp ACAATTATTGCTACTAATAGTAGATGAGACATAAAGATGATTTGTATCAA AACATTTACACGTaaacaagaaatgaaaaatggtaTCGTTGGATTACGAA AACTTAATCCACTGACGATGTTGGTGAATTTACAAGAAACAACACTTACT GGCTAGCTTGGGACACGAATCGAAAGATGTGGAAACGCTCAAAACTTCGG GGTTTCCGAAGACCGAAACAATACATCGCTGTTATTGTCTTCGTCATATG CACTATTGAACTGATTAATTTATTGCAAAGTGAAAACCAACCTTTAGAAG TAAAGCCCCCTTTACATCACAAAGATATCAATCACGAACTTCAACTCGAG CGGATGGCTATGGATAAGAATATCAAGAGTTTACATCGAGATTTAATCAC TGCATCTAGATATTCAAGGGATGAAAGGATCTCTCTTGCACTTAAGGATA TCGTGTCTTCATTCTTCAGAATCAACCAGGCTATGAAAACCACCGAAAAT CTCCCTGGGGAAATGACGATCGTCTTAAATTGCCAAAATGAGTGCTCTTT TACAAATCTAAACGACATTTTGGATGGTATATCGAAAAGTATACATAAAA ATAACCCAATCGTTATCGCAACATCAAAAGTAGAGATTTTCAGATACATC CTTGAATCAAAATTGAAGCACCTACCTCATTTGAATTTAGTCAAAGTTGG ACAATCCGATTCATTTAAAATGATATATAAAACAATCTGCAACCATGTTT CGACTGATACCTTGTTCATCACCAGAAGTTTAACTAAATTTCCATCAGAA ACCTCATTAAGGAAGATTGAATCTATGATGTTATCCGATGTTGAATTTCA TCAGAATCTCATTATAGGAGCATCTGTCACTGATCACCAAAATATCTGGG ATACAGGGTGCTACAGAACTAAAATGTTACTCTATCAATACCGAATCACT AAAGGACATGATGAAAGTTTTGGTCAATCTAATATGCTTCACTGTGATTA TCTTCTGGGTGCATTTGCTATCCATAAAAAgacatttcaaaaatatttga gaacTAATTATTTAGGAATTGCTTTCTCAAATGAACCAATGTTTCGAGCA CCAGATTCGTTTTTCACTAAAAATATCTTCTATCTAGATCTTTTTAATTa tctcaaaagtaaattgtATACTGTGAAGCTTATGCTAGATATTACCTTCC CT Run BLAST on NCBI protein sequence of TCONS_00071841-protein >TCONS_00071841-protein ID=TCONS_00071841-protein|Name=TCONS_00071841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MWKRSKLRGFRRPKQYIAVIVFVICTIELINLLQSENQPLEVKPPLHHKD INHELQLERMAMDKNIKSLHRDLITASRYSRDERISLALKDIVSSFFRIN QAMKTTENLPGEMTIVLNCQNECSFTNLNDILDGISKSIHKNNPIVIATS KVEIFRYILESKLKHLPHLNLVKVGQSDSFKMIYKTICNHVSTDTLFITR SLTKFPSETSLRKIESMMLSDVEFHQNLIIGASVTDHQNIWDTGCYRTKM LLYQYRITKGHDESFGQSNMLHCDYLLGAFAIHKKTFQKYLRTNYLGIAF SNEPMFRAPDSFFTKNIFYLDLFNYLKSKLYTVKLMLDITFP Run BLAST on NCBI transcript from alignment at scaffold_64:143041..146607+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071841 ID=TCONS_00071841|Name=TCONS_00071841|organism=Clytia hemisphaerica|type=transcript|length=3567bp|location=Sequence derived from alignment at scaffold_64:143041..146607+ (Clytia hemisphaerica) ACAATTATTGCTACTAATAGTAGATGAGACATAAAGATGATTTGTATCAA
AACATTTACACGTaaacaagaaatgaaaaatggtaTCGTTGGATTACGAA
AACTTAATCCACTGACGATGTTGGTGAATTTACAAGGTAACAACAGTTTG
TTTTCTCAAGCCAGTAAATACTGATTCGTTTCTAGTATGTTCATCTTTGA
AAAATCACAACCTGTAGCTAGTGGTTTTGATTGCTCTACTACTGTACCGA
GACAGGGTTGTGCTACTTAACCTCTCTTCTTGGCATCACTTGCTTCCATT
TACACAAACAAGTGACcaagctggtacacaacgttgtttcgacgttaatc
caatgttcacaacgtccatatattGTTAGATGGTCGTTAAaccaatgttg
tgtgccagctagggAACATCTCTTGCCCTACCTTTATTGGTCAGCCGTGA
TGACCCTTTaaatctcttttttcattttcataagaCGACAAAAAGTGAAG
GCGTTTATTCGCCTTTTTTGGTCGGGCGTGGGCGGAATTGTGCACAGTTG
ATGATTGTTATCCGATCGGGTTAAGTTTGGTTTTCCGATCTGTGTATTTG
CTCTCCAGCTTTTTTCGGGCAGCGTTCCGGTTGGGATACGCTTTCAATTT
ATCCAATCGGGCTAAGTTTGGTTTCCCGATATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATCTAAATATCTATCCTAACTAAGAGACGAA
TAATTATTCTGTCATACAGATTGTAACATGGCATATTTTCGTTAATCCAT
ATTGTTTACAAACgtaaatttaatgatttttttactctcgttttagtaaa
tcatatcaatttttaacaacatatctttctagtcatattaagcaatttag
gctgaccttccagcgcagctggtttatctTGATTTTGTAATggcttttta
aggattttaaaggtgcaaaaattattttactttgAATTTCTTATACTTCA
GAAACAACACTTACTGGCTAGCTTGGGACACGAATCGAAAGATGTGGAAA
CGCTCAAAACTTCGGGGTTTCCGAAGACCGAAACAATACATCGCTGTTAT
TGTCTTCGTCATATGCACTATTGAACTGATTAATTTATTGCAAAGTGAAA
ACCAACCTTTAGAAGTAAAGCCCCCTTTACATCACAAAGATATCAATCAC
GAACTTCAACTCGAGCGGATGGCTATGGATAAGAATATCAAGAGTTTACA
TCGAGATTTAATCACTGCATCTAGATATTCAAGGGATGAAAGGATCTCTC
TTGCACTTAAGGATATCGTGTCTTCATTCTTCAGAATCAACCAGGCTATG
AAAACCACCGAAAATCTCCCTGGGGAAATGACGATCGTCTTAAATTGCCA
AAATGAGTGCTCTTTTACAAATCTAAACGACATTTTGGATGGTATATCGA
AAAGTATACATAAAAATAACCCAATCGTTATCGCAACATCAAAAGTAGAG
ATTTTCAGATACATCCTTGAATCAAAATTGAAGCACCTACCTCATTTGAA
TTTAGTCAAAGTTGGACAATCCGATTCATTTAAAATGATATATAAAACAA
TCTGCAACCATGTTTCGACTGATACCTTGTTCATCACCAGAAGTTTAACT
AAATTTCCATCAGAAACCTCATTAAGGAAGATTGAATCTATGATGTTATC
CGATGTTGAATTTCATCAGAATCTCATTATAGGAGCATCTGTCACTGATC
ACCAAAATATCTGGGATACAGGGTGCTACAGAACTAAAATGTTACTCTAT
CAATACCGAATCACTAAAGGACATGATGAAAGTTTTGGTCAATCTAATAT
GCTTCACTGTGATTATCTTCTGGGTGCATTTGCTATCCATAAAAAgacat
ttcaaaaatatttgagaacTAATTATTTAGGAATTGCTTTCTCAAATGAA
CCAATGTTTCGAGCACCAGATTCGTTTTTCACTAAAAATATCTTCTATCT
AGATCTTTTTAATTatctcaaaagtaaattgtATACTGTGAAGCTTATGC
TAGATATTACCTTCCCT Coding sequence (CDS) from alignment at scaffold_64:143041..146607+ >TCONS_00071841 ID=TCONS_00071841|Name=TCONS_00071841|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_64:143041..146607+ (Clytia hemisphaerica) ATGTGGAAACGCTCAAAACTTCGGGGTTTCCGAAGACCGAAACAATACAT CGCTGTTATTGTCTTCGTCATATGCACTATTGAACTGATTAATTTATTGC AAAGTGAAAACCAACCTTTAGAAGTAAAGCCCCCTTTACATCACAAAGAT ATCAATCACGAACTTCAACTCGAGCGGATGGCTATGGATAAGAATATCAA GAGTTTACATCGAGATTTAATCACTGCATCTAGATATTCAAGGGATGAAA GGATCTCTCTTGCACTTAAGGATATCGTGTCTTCATTCTTCAGAATCAAC CAGGCTATGAAAACCACCGAAAATCTCCCTGGGGAAATGACGATCGTCTT AAATTGCCAAAATGAGTGCTCTTTTACAAATCTAAACGACATTTTGGATG GTATATCGAAAAGTATACATAAAAATAACCCAATCGTTATCGCAACATCA AAAGTAGAGATTTTCAGATACATCCTTGAATCAAAATTGAAGCACCTACC TCATTTGAATTTAGTCAAAGTTGGACAATCCGATTCATTTAAAATGATAT ATAAAACAATCTGCAACCATGTTTCGACTGATACCTTGTTCATCACCAGA AGTTTAACTAAATTTCCATCAGAAACCTCATTAAGGAAGATTGAATCTAT GATGTTATCCGATGTTGAATTTCATCAGAATCTCATTATAGGAGCATCTG TCACTGATCACCAAAATATCTGGGATACAGGGTGCTACAGAACTAAAATG TTACTCTATCAATACCGAATCACTAAAGGACATGATGAAAGTTTTGGTCA ATCTAATATGCTTCACTGTGATTATCTTCTGGGTGCATTTGCTATCCATA AAAAgacatttcaaaaatatttgagaacTAATTATTTAGGAATTGCTTTC TCAAATGAACCAATGTTTCGAGCACCAGATTCGTTTTTCACTAAAAATAT CTTCTATCTAGATCTTTTTAATTatctcaaaagtaaattgtATACTGTGA AGCTTATGCTAGATATTACCTTCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071841-exon-scaffold_64-1491911889:143041..143176 | TCONS_00071841-exon-scaffold_64-1491911889:143041..143176 | Clytia hemisphaerica | exon |
TCONS_00071841-exon-scaffold_64-1510915933:143041..143176 | TCONS_00071841-exon-scaffold_64-1510915933:143041..143176 | Clytia hemisphaerica | exon |
TCONS_00071841-exon-scaffold_64-1575043694:143041..143176 | TCONS_00071841-exon-scaffold_64-1575043694:143041..143176 | Clytia hemisphaerica | exon |
TCONS_00071841-exon-scaffold_64-1491911889:145542..146607 | TCONS_00071841-exon-scaffold_64-1491911889:145542..146607 | Clytia hemisphaerica | exon |
TCONS_00071841-exon-scaffold_64-1510915933:145542..146607 | TCONS_00071841-exon-scaffold_64-1510915933:145542..146607 | Clytia hemisphaerica | exon |
TCONS_00071841-exon-scaffold_64-1575043694:145542..146607 | TCONS_00071841-exon-scaffold_64-1575043694:145542..146607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_64 | supercontig | scaffold_64:143041..146607 + |
Blast
The following BLAST results are available for this feature:
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