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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071837 ID=TCONS_00071837|Name=TCONS_00071837|organism=Clytia hemisphaerica|type=transcript|length=2116bp
TGATCTGTTATGTCAATATAAAGGCATCCaaatattaaaatttctttaat
ttgtgAACAACCATCAGGTAGCACAATGATGTTGGTAATGTTATTTGTGG
CCCTGTTTCCAATTGCTATCTGCGCTCCTACCAGTTCCGATTTCAACCAA
CTCAAAACTGAAATCAAGTCTTTaagagatgaaatattttacttAAAAAG
CAAAGACCAATACCAGAACGGGATATGTGATGTGAATGCTGATAAATGTG
GTACATGTTACTGTCGAGAAGATTACAATATGATCGAGAAGTTTTATTGC
GACTGCAGAGCTAAGCCCGTGCGCCGTGACTGTAAGGATCACTACCAGAA
GGGAGGCCGCGTCAGTGGCCTGTATAGGATCAATCAGAACATATTGGGAG
CCTTGGTACAGGTCTACTGTGACCAGACAACGGATGGTGGTGGCTGGACC
TTGATACAAAGAAGGGTGGATGGATCCACAAACTTCTACCGTAATTGGAC
AGAGTACAAAGAAGGATTTGGACAGCTCCACAGAGAACATTGGCTTGGGA
ATGAACTGATTTATCGGCTGGTGGCACAAGCATTTCTGAAAGGATCTGAG
GCACGTTTCGACATGCAAGCCAAGGGCGCTTCCAAGAGGATTTGGGCTAA
GTATTCGACATTTGGGATCAATCAAGAAACAGATGGGTATCGGCTTCATG
TTGCAGGGTACAGTGGAACAGCAGGTGATAAAATGTCAAATCATAATGGT
TTGAAGTATACAACGTACGACCGAGATTCGGATACGTGGAGTGCTGGAAA
CTGTGCCAAAGATAGGAATGGTGCTTGGTGGTATAGTCAATGTACTGATT
CGAATCTTAATTCCTATTATGATCCATTTGATAAAAGCAGTGCTAGTAAG
AGCTTGGGTTGGGACCCAATGAGTATCAAATTCTCGGAAATCAAATTACG
TCGTAAGTGAATCCTTAACGCTGCTACGATGAACAATGTTTTATTTCTTC
GGACACAATGATTATTATTTGAGTTTGAATCTTtgatttttattgtttat
ttttttattgtttatctTTAAGAAGTATATTTTTCCCGAAAGACCTTTGA
TTGATCCTCGTAACTTAACCTAACTTAATGAAGTCGCCTGCTAAAGATAA
TGGTTAAAATAACAAGGGAGGGTACTCTGTTTAAAAACGGTTGTATATAC
CGACCCATAATTAGGACTTTCCCTtacagagaaaatttagccaaatttgg
gcgaaaaattTACTGTtgtgtttttcttcattttctggCAAAAGAAGTCA
GATTCTccaaattttaaacccttagagtgcactttttctcatctttgctc
atttcgactTTGCAGTGTACTTTTGGAAGTTTGGAAAAAGGACCCTTGAG
GGCCCCCTTTCCAGGGTTAACAATGGTTAATGGTATCTTCTTAATTTCCT
TATTTTAAATGAGTCCTTCAGGATATACGTGGGAGACCGATATTGTCAAC
TCAACatcttaaaaattgaaagttctttaTATTGAATTGAATGATGGGTG
GTGAACCTTGTGAATCTTTTTTTGTCATCAGAGTGTTTCGTACGGCTTAA
ATGACCGGTCATTTAAGCCGTACGAAACACTTTGATGACCAAAAAAGATT
CACAAGGTTGATTGACACCGAAAGTCTCTTCTTATTCTCTTATAGTTTTT
ATTGTAACTATACCTTGCTTTACGGTTTTTACTAGCAAAATATCCCACCC
CTCCGGAAATTTTGACCCTCACCcgtttattgaaaaataaaaatatttac
caaAACCCCCCATTAATAACCTGAGAGTAAGCTTCCCAAAGCCATTTCGC
CTTGTTTTTAGTTTATCGCTAGTATTTTTCAAACTATAATCTTTGTATAG
GGGAATTATTTTCTGCGTTTCAGAGAAAGATTAAAACGTCTCGTGCATTT
CACCTTGGCTCTTCCTGTCACTGGTGGTTCTTTTGAGAGTTTTTCCATCT
AGTCGCCCCTGTCCCTTCCCGACTACTTTGCAAATTAAAAATCAGACTCA
GACTTTATTTCCCACTTTTTAATTGGTCccaaaaagagaataaaaacatc
caatttaaaagtttat Run BLAST on NCBI protein sequence of TCONS_00071837-protein >TCONS_00071837-protein ID=TCONS_00071837-protein|Name=TCONS_00071837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MMLVMLFVALFPIAICAPTSSDFNQLKTEIKSLRDEIFYLKSKDQYQNGI
CDVNADKCGTCYCREDYNMIEKFYCDCRAKPVRRDCKDHYQKGGRVSGLY
RINQNILGALVQVYCDQTTDGGGWTLIQRRVDGSTNFYRNWTEYKEGFGQ
LHREHWLGNELIYRLVAQAFLKGSEARFDMQAKGASKRIWAKYSTFGINQ
ETDGYRLHVAGYSGTAGDKMSNHNGLKYTTYDRDSDTWSAGNCAKDRNGA
WWYSQCTDSNLNSYYDPFDKSSASKSLGWDPMSIKFSEIKLRRK Run BLAST on NCBI transcript from alignment at scaffold_64:35488..38012+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071837 ID=TCONS_00071837|Name=TCONS_00071837|organism=Clytia hemisphaerica|type=transcript|length=2525bp|location=Sequence derived from alignment at scaffold_64:35488..38012+ (Clytia hemisphaerica)
TGATCTGTTATGTCAATATAAAGGCATCCaaatattaaaatttctttaat
ttgtgAACAACCATCAGGTAGCACAATGATGTTGGTAATGTTATTTGTGG
CCCTGTTTCCAATTGCTATCTGCGCTCCTACCAGTTCCGATTTCAACCAA
CTCAAAACTGAAATCAAGTCTTTaagagatgaaatattttacttAAAAAG
CAAAGACCAATACCAGAACGGGATATGTGATGTGAATGCTGATAAATGTG
GTACATGTTACTGTCGAGAAGATTACAATATGATCGAGAAGTTTTATTGC
GACTGCAGAGCTAAGCCCGTGCGCCGTGACTGTAAGGATCACTACCAGAA
GGGAGGCCGCGTCAGTGGCCTGTATAGGATCAATCAGAACATATTGGGAG
CCTTGGTACAGGTCTACTGTGACCAGACAACGGATGGTGGTGGCTGGACC
TTGATACAAAGAAGGGTGGATGGATCCACAAACTTCTACCGTAATTGGAC
AGAGTACAAAGAAGGATTTGGACAGCTCCACAGAGAACATTGGCTTGGGA
ATGAACTGATTTATCGGCTGGTGGCACAAGCATTTCTGAAAGGATCTGAG
GCACGTTTCGACATGCAAGCCAAGGGCGCTTCCAAGAGGATTTGGGCTAA
GTATTCGACATTTGGGATCAATCAAGAAACAGATGGGTATCGGCTTCATG
TTGCAGGGTACAGTGGAACAGCAGGTTAAAATTATATCTGTAGTAATTTG
ACTTTTTTCGAATAAGTGGTTGAATTTTTCCACCTGGGACATTCCCGATG
CCATGCATACTAGCTTTTGAGAATTTACACATTTCTTTTATTATGAGCAA
CCAAGTTGCTAAGGCTCGAGCCCTGAAATCAGCAAATTTCTTTTCACTAT
CTCGTgaagtaaaagcttttttagataatctaaacatgacaaacgatagc
ccttgacccaatcagcataaatatggtataatatcaggggtggtcaaagc
aaatttttctgaaaatgagctagaatgctaagcaaccccagccctgacTC
GAAAATTAGagctgcttataaaaaaatgtgtacataTCTATTAGAACAAT
CATTTatcttttatttcatttatgaATACACAGGTGATAAAATGTCAAAT
CATAATGGTTTGAAGTATACAACGTACGACCGAGATTCGGATACGTGGAG
TGCTGGAAACTGTGCCAAAGATAGGAATGGTGCTTGGTGGTATAGTCAAT
GTACTGATTCGAATCTTAATTCCTATTATGATCCATTTGATAAAAGCAGT
GCTAGTAAGAGCTTGGGTTGGGACCCAATGAGTATCAAATTCTCGGAAAT
CAAATTACGTCGTAAGTGAATCCTTAACGCTGCTACGATGAACAATGTTT
TATTTCTTCGGACACAATGATTATTATTTGAGTTTGAATCTTtgattttt
attgtttatttttttattgtttatctTTAAGAAGTATATTTTTCCCGAAA
GACCTTTGATTGATCCTCGTAACTTAACCTAACTTAATGAAGTCGCCTGC
TAAAGATAATGGTTAAAATAACAAGGGAGGGTACTCTGTTTAAAAACGGT
TGTATATACCGACCCATAATTAGGACTTTCCCTtacagagaaaatttagc
caaatttgggcgaaaaattTACTGTtgtgtttttcttcattttctggCAA
AAGAAGTCAGATTCTccaaattttaaacccttagagtgcactttttctca
tctttgctcatttcgactTTGCAGTGTACTTTTGGAAGTTTGGAAAAAGG
ACCCTTGAGGGCCCCCTTTCCAGGGTTAACAATGGTTAATGGTATCTTCT
TAATTTCCTTATTTTAAATGAGTCCTTCAGGATATACGTGGGAGACCGAT
ATTGTCAACTCAACatcttaaaaattgaaagttctttaTATTGAATTGAA
TGATGGGTGGTGAACCTTGTGAATCTTTTTTTGTCATCAGAGTGTTTCGT
ACGGCTTAAATGACCGGTCATTTAAGCCGTACGAAACACTTTGATGACCA
AAAAAGATTCACAAGGTTGATTGACACCGAAAGTCTCTTCTTATTCTCTT
ATAGTTTTTATTGTAACTATACCTTGCTTTACGGTTTTTACTAGCAAAAT
ATCCCACCCCTCCGGAAATTTTGACCCTCACCcgtttattgaaaaataaa
aatatttaccaaAACCCCCCATTAATAACCTGAGAGTAAGCTTCCCAAAG
CCATTTCGCCTTGTTTTTAGTTTATCGCTAGTATTTTTCAAACTATAATC
TTTGTATAGGGGAATTATTTTCTGCGTTTCAGAGAAAGATTAAAACGTCT
CGTGCATTTCACCTTGGCTCTTCCTGTCACTGGTGGTTCTTTTGAGAGTT
TTTCCATCTAGTCGCCCCTGTCCCTTCCCGACTACTTTGCAAATTAAAAA
TCAGACTCAGACTTTATTTCCCACTTTTTAATTGGTCccaaaaagagaat
aaaaacatccaatttaaaagtttat Coding sequence (CDS) from alignment at scaffold_64:35488..38012+ >TCONS_00071837 ID=TCONS_00071837|Name=TCONS_00071837|organism=Clytia hemisphaerica|type=CDS|length=1770bp|location=Sequence derived from alignment at scaffold_64:35488..38012+ (Clytia hemisphaerica)
ATGATGTTGGTAATGTTATTTGTGGCCCTGTTTCCAATTGCTATCTGCGC
TCCTACCAGTTCCGATTTCAACCAACTCAAAACTGAAATCAAGTCTTTaa
gagatgaaatattttacttAAAAAGCAAAGACCAATACCAGAACGGGATA
TGTGATGTGAATGCTGATAAATGTGGTACATGTTACTGTCGAGAAGATTA
CAATATGATCGAGAAGTTTTATTGCGACTGCAGAGCTAAGCCCGTGCGCC
GTGACTGTAAGGATCACTACCAGAAGGGAGGCCGCGTCAGTGGCCTGTAT
AGGATCAATCAGAACATATTGGGAGCCTTGGTACAGGTCTACTGTGACCA
GACAACGGATGGTGGTGGCTGGACCTTGATACAAAGAAGGGTGGATGGAT
CCACAAACTTCTACCGTAATTGGACAGAGTACAAAGAAGGATTTGGACAG
CTCCACAGAGAACATTGGCTTGGGAATGAACTGATTTATCGGCTGGTGGC
ACAAGCATTTCTGAAAGGATCTGAGGCACGTTTCGACATGCAAGCCAAGG
GCGCTTCCAAGAGGATTTGGGCTAAGTATTCGACATTTGGGATCAATCAA
GAAACAGATGGGTATCGGCTTCATGTTGCAGGGTACAGTGGAACAGCAGG
TGATAAAATGTCAAATCATAATGGTTTGAAGTATACAACGTACGACCGAG
ATTCGGATACGTGGAGTGCTGGAAACTGTGCCAAAGATAGGAATGGTGCT
TGGTGGTATAGTCAATGTACTGATTCGAATCTTAATTCCTATTATGATCC
ATTTGATAAAAGCAGTGCTAGTAAGAGCTTGGGTTGGGACCCAATGAGTA
TCAAATTCTCGGAAATCAAATTACGTCGTAAGTGAATGATGTTGGTAATG
TTATTTGTGGCCCTGTTTCCAATTGCTATCTGCGCTCCTACCAGTTCCGA
TTTCAACCAACTCAAAACTGAAATCAAGTCTTTaagagatgaaatatttt
acttAAAAAGCAAAGACCAATACCAGAACGGGATATGTGATGTGAATGCT
GATAAATGTGGTACATGTTACTGTCGAGAAGATTACAATATGATCGAGAA
GTTTTATTGCGACTGCAGAGCTAAGCCCGTGCGCCGTGACTGTAAGGATC
ACTACCAGAAGGGAGGCCGCGTCAGTGGCCTGTATAGGATCAATCAGAAC
ATATTGGGAGCCTTGGTACAGGTCTACTGTGACCAGACAACGGATGGTGG
TGGCTGGACCTTGATACAAAGAAGGGTGGATGGATCCACAAACTTCTACC
GTAATTGGACAGAGTACAAAGAAGGATTTGGACAGCTCCACAGAGAACAT
TGGCTTGGGAATGAACTGATTTATCGGCTGGTGGCACAAGCATTTCTGAA
AGGATCTGAGGCACGTTTCGACATGCAAGCCAAGGGCGCTTCCAAGAGGA
TTTGGGCTAAGTATTCGACATTTGGGATCAATCAAGAAACAGATGGGTAT
CGGCTTCATGTTGCAGGGTACAGTGGAACAGCAGGTGATAAAATGTCAAA
TCATAATGGTTTGAAGTATACAACGTACGACCGAGATTCGGATACGTGGA
GTGCTGGAAACTGTGCCAAAGATAGGAATGGTGCTTGGTGGTATAGTCAA
TGTACTGATTCGAATCTTAATTCCTATTATGATCCATTTGATAAAAGCAG
TGCTAGTAAGAGCTTGGGTTGGGACCCAATGAGTATCAAATTCTCGGAAA
TCAAATTACGTCGTAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071837-exon-scaffold_64-1491911889:35488..36211 | TCONS_00071837-exon-scaffold_64-1491911889:35488..36211 | Clytia hemisphaerica | exon |
| TCONS_00071837-exon-scaffold_64-1510915933:35488..36211 | TCONS_00071837-exon-scaffold_64-1510915933:35488..36211 | Clytia hemisphaerica | exon |
| TCONS_00071837-exon-scaffold_64-1575043694:35488..36211 | TCONS_00071837-exon-scaffold_64-1575043694:35488..36211 | Clytia hemisphaerica | exon |
| TCONS_00071837-exon-scaffold_64-1491911889:36621..38012 | TCONS_00071837-exon-scaffold_64-1491911889:36621..38012 | Clytia hemisphaerica | exon |
| TCONS_00071837-exon-scaffold_64-1510915933:36621..38012 | TCONS_00071837-exon-scaffold_64-1510915933:36621..38012 | Clytia hemisphaerica | exon |
| TCONS_00071837-exon-scaffold_64-1575043694:36621..38012 | TCONS_00071837-exon-scaffold_64-1575043694:36621..38012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_64 | supercontig | scaffold_64:35488..38012 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00071837 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 3.148e-45 Identity = 99/228 (43.42%), Postives = 130/228 (57.02%), Query Frame = 1
Query: 298 CDCRAKPVRRDCKDHYQKGGRVSGLYRINQNILGALVQVYCDQTTDGGGWTLIQRRVDGSTNFYRNWTEYKEGFGQLHREHWLGNELIYRLVAQAFLKGSEARFDMQAKGASKRIWAKYSTFG-----INQETDGYRLHVAGYSGTAGDKMSNHNGLKYTTYDRDSDTWSAGNCAKDRNGAWWYSQCTDSNLNSYYDPFDKSSASKSLGWDP-----MSIKFSEIKLR 951
C ++P RDC D G + G+Y + A QVYCD TDGGGWT+ QRR DGS NF+R W Y++GFG+L EHWLG + I+ L QA E D++ + +A+Y +FG ++ E DGY L VA YSGTAGD + H+G+++TT DRDSD S NCA GAWWY C SNLN Y +S + + W S+KFSE+K+R
Sbjct: 235 CATGSRP--RDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQA---AYELHVDLE-DFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSDH-SENNCAAFYRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
The following BLAST results are available for this feature:
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