TCONS_00071833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071833
Unique NameTCONS_00071833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2037

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=transcript|length=2037bp
TTCGAATTTGGAATTTATGAGCATTCTTAAACATACTACGAAGAAAAAGT
ATACATGAAACTGTACTATGATAAATAAAGTGATAAATTTACAATCTTTT
TTGATATTATATATTTACATGATTTGATATCATATAGAACATCAAATGGT
ACGAACAAAAGAAagtgcaaaataaaaaaacactagttggaaaaaatgaa
aagtgttgAGAAAAAAACCAACACTGTCCAATCAGACTGAGTCATCATTC
AGTTAAAGATTGAGTTTAAAAATCGTGATTGAAAAAATCAGTATTTATGC
GGTAGCATGTCCTTTAGAGCTCTCGTAGCTTCCTCGATACCATTTTCATG
TGCTTTCTTCAAATAAGATTCAATCTCATGTTCTTCAAGGTCTATATTAT
AGCCCTGCATATGGCCTGCAACGACGTTGTAAGATGCGTCAGGGTGGCCC
TGTGATGCTGCATGTTTGAACCATTGCATAGCCACGTCCTCATCTTTATC
GACTCCACGTCCATTCAGATATTTGTGGCCTAACAAGTGTTGTGCATCAG
TGCTACCAAGGTGTGCGTAGGCTCGAGTAACATGAAAATGTAGATGATCT
ATGTAGTAATACATATAGACAAAGAAACATAAAACAGAGACTACAATTGT
GATCTCGATTGCCAATACCCACCAAGGCTCTGGTTTCTTCTTTCTTGCCA
AATAGACTTTTGGTCCGTAAGGCAATAAAGGATCATAGTCTGGTCCTCCT
TTAGCCCATGATGGTTTATAACGTTCCTGGGGTGTCTTTCTTTTCCTTGC
TTTGCCTTCAGTTGATgttatttgtgacatttttccTTATCTTTTTTCAG
CTTCTTTTGCTCCTCTACTTTTCTTCTGACACTACTTCTCTATCATCTAC
TAAatgagaaaaatattatttatatACTTGAGAAATCCatatcttttatt
taaaatgaaaaaaaactcaaTTGGCAGGTGATTGTATTCaagttgaaaac
caaactaGATCGATATGACGTGTAAACATTTTTCTCTGTATTTTTTGCTG
GTTGGAAAACTTGATTTTCTCTTCATAAAAATCGTCGAATGTTGTTTTGA
ATATCTCAATGAACTGGATGATAAATAATGAATTAGATTATAAAGAGGAA
TGTCAGAATGGGTACATTTTTTTAGATCCAGAAAAACCATCAGCAGACAA
ATATCACTGAAATCAATAGTCAATATTTTTAGCACATTCGAAAATTCGAA
TCTTCGATTTTCCCGCGTAAATTAATGAAGTCCCTGCAATGTTATGTCGT
CGCCCGGTCATTTGATGAAGGCGGGTCCAGAGAAATAGATATTTCGAAAA
TGTTTGCTGTCTTGAATTTTATTGAAGttcttgaaaatattgaaatgaag
aatttatgaaaaaagCCTGAATCACTGTTTAAATCTGAAAATcagaatac
aaaaaaataaatttttgatgacttttCGAAAACTCGATTGTTGTTGCCTC
GCTTACACATACTTTTGTAGTATCTTGGTAAATCGAGTCCATCAACAACA
TTCTATCAGGAGCGAGGAGGACGAACCCCCAGGAGCCAGAGCTGAAAACT
GAAACATTTCAAAGACTTTGTGTGGTTGGAATGTTGATCAAATCTGCTTT
GTTTCTTTGATGAGTTTCATTATGTTTAATGGAAATTTCTTGGCGTATTT
GTCCTGGATCTTTGTTTTCCTTGCTTGTAGCTGTATTTGGAGTCCCAGCA
CCAAATGTGCAACACATTGGCGTTTTGAAGATGGTGAAGTCAACGCCATT
TACAACGAAATCGATGAAATATGGGAGAAGGATACACTGTTCAATATTCT
AGCTACATCCACCTCAAACATtgaaaatccatcaaaagacAATGAGAATT
CCTCTTCAGACATGCTTCACTTGCCAACTCAAATTGATGTTAAAGACTCA
AATAATCAGCAAAATATTAATGCAAATTCAAGGTATAGATATATGGatat
gtaatgtaatgtaaaatgtaaaaagtcTGGGTTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00071833-protein

>TCONS_00071833-protein ID=TCONS_00071833-protein|Name=TCONS_00071833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSQITSTEGKARKRKTPQERYKPSWAKGGPDYDPLLPYGPKVYLARKKKP
EPWWVLAIEITIVVSVLCFFVYMYYYIDHLHFHVTRAYAHLGSTDAQHLL
GHKYLNGRGVDKDEDVAMQWFKHAASQGHPDASYNVVAGHMQGYNIDLEE
HEIESYLKKAHENGIEEATRALKDMLPHKY
Run BLAST on NCBI

transcript from alignment at scaffold_63:1218875..1220911

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at scaffold_63:1218875..1220911 (Clytia hemisphaerica)
CCCAAACCCAgactttttacattttacattacattacatatCCATATATC TATACCTTGAATTTGCATTAATATTTTGCTGATTATTTGAGTCTTTAACA TCAATTTGAGTTGGCAAGTGAAGCATGTCTGAAGAGGAATTCTCATTgtc ttttgatggattttcaATGTTTGAGGTGGATGTAGCTAGAATATTGAACA GTGTATCCTTCTCCCATATTTCATCGATTTCGTTGTAAATGGCGTTGACT TCACCATCTTCAAAACGCCAATGTGTTGCACATTTGGTGCTGGGACTCCA AATACAGCTACAAGCAAGGAAAACAAAGATCCAGGACAAATACGCCAAGA AATTTCCATTAAACATAATGAAACTCATCAAAGAAACAAAGCAGATTTGA TCAACATTCCAACCACACAAAGTCTTTGAAATGTTTCAGTTTTCAGCTCT GGCTCCTGGGGGTTCGTCCTCCTCGCTCCTGATAGAATGTTGTTGATGGA CTCGATTTACCAAGATACTACAAAAGTATGTGTAAGCGAGGCAACAACAA TCGAGTTTTCGaaaagtcatcaaaaatttatttttttgtattctgATTTT CAGATTTAAACAGTGATTCAGGcttttttcataaattcttcatttcaata ttttcaagaaCTTCAATAAAATTCAAGACAGCAAACATTTTCGAAATATC TATTTCTCTGGACCCGCCTTCATCAAATGACCGGGCGACGACATAACATT GCAGGGACTTCATTAATTTACGCGGGAAAATCGAAGATTCGAATTTTCGA ATGTGCTAAAAATATTGACTATTGATTTCAGTGATATTTGTCTGCTGATG GTTTTTCTGGATCTAAAAAAATGTACCCATTCTGACATTCCTCTTTATAA TCTAATTCATTATTTATCATCCAGTTCATTGAGATATTCAAAACAACATT CGACGATTTTTATGAAGAGAAAATCAAGTTTTCCAACCAGCAAAAAATAC AGAGAAAAATGTTTACACGTCATATCGATCtagtttggttttcaacttGA ATACAATCACCTGCCAAttgagttttttttcattttaaataaaagatatG GATTTCTCAAGTatataaataatatttttctcatTTAGTAGATGATAGAG AAGTAGTGTCAGAAGAAAAGTAGAGGAGCAAAAGAAGCTGAAAAAAGATA AggaaaaatgtcacaaataacATCAACTGAAGGCAAAGCAAGGAAAAGAA AGACACCCCAGGAACGTTATAAACCATCATGGGCTAAAGGAGGACCAGAC TATGATCCTTTATTGCCTTACGGACCAAAAGTCTATTTGGCAAGAAAGAA GAAACCAGAGCCTTGGTGGGTATTGGCAATCGAGATCACAATTGTAGTCT CTGTTTTATGTTTCTTTGTCTATATGTATTACTACATAGATCATCTACAT TTTCATGTTACTCGAGCCTACGCACACCTTGGTAGCACTGATGCACAACA CTTGTTAGGCCACAAATATCTGAATGGACGTGGAGTCGATAAAGATGAGG ACGTGGCTATGCAATGGTTCAAACATGCAGCATCACAGGGCCACCCTGAC GCATCTTACAACGTCGTTGCAGGCCATATGCAGGGCTATAATATAGACCT TGAAGAACATGAGATTGAATCTTATTTGAAGAAAGCACATGAAAATGGTA TCGAGGAAGCTACGAGAGCTCTAAAGGACATGCTACCGCATAAATACTGA TTTTTTCAATCACGATTTTTAAACTCAATCTTTAACTGAATGATGACTCA GTCTGATTGGACAGTGTTGGTTTTTTTCTcaacacttttcattttttcca actagtgtttttttattttgcactTTCTTTTGTTCGTACCATTTGATGTT CTATATGATATCAAATCATGTAAATATATAATATCAAAAAAGATTGTAAA TTTATCACTTTATTTATCATAGTACAGTTTCATGTATACTTTTTCTTCGT AGTATGTTTAAGAATGCTCATAAATTCCAAATTCGAA

Coding sequence (CDS) from alignment at scaffold_63:1218875..1220911

>TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_63:1218875..1220911 (Clytia hemisphaerica)
atgtcacaaataacATCAACTGAAGGCAAAGCAAGGAAAAGAAAGACACC
CCAGGAACGTTATAAACCATCATGGGCTAAAGGAGGACCAGACTATGATC
CTTTATTGCCTTACGGACCAAAAGTCTATTTGGCAAGAAAGAAGAAACCA
GAGCCTTGGTGGGTATTGGCAATCGAGATCACAATTGTAGTCTCTGTTTT
ATGTTTCTTTGTCTATATGTATTACTACATAGATCATCTACATTTTCATG
TTACTCGAGCCTACGCACACCTTGGTAGCACTGATGCACAACACTTGTTA
GGCCACAAATATCTGAATGGACGTGGAGTCGATAAAGATGAGGACGTGGC
TATGCAATGGTTCAAACATGCAGCATCACAGGGCCACCCTGACGCATCTT
ACAACGTCGTTGCAGGCCATATGCAGGGCTATAATATAGACCTTGAAGAA
CATGAGATTGAATCTTATTTGAAGAAAGCACATGAAAATGGTATCGAGGA
AGCTACGAGAGCTCTAAAGGACATGCTACCGCATAAATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044601XLOC_044601Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071833-proteinTCONS_00071833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071833-exon-scaffold_63-1491911889:1218875..1220911TCONS_00071833-exon-scaffold_63-1491911889:1218875..1220911Clytia hemisphaericaexon
TCONS_00071833-exon-scaffold_63-1510915933:1218875..1220911TCONS_00071833-exon-scaffold_63-1510915933:1218875..1220911Clytia hemisphaericaexon
TCONS_00071833-exon-scaffold_63-1575043694:1218875..1220911TCONS_00071833-exon-scaffold_63-1575043694:1218875..1220911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:1218875..1220911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.582239 0.81381 0.439494 0.623465 2.40789 1.86138 12.2015 12.404 14.523 10.0885 12.014 13.197 29.2358 25.6432 10.9213 10.4311 8.17348 9.64688 33.0304 40.177 19.0274 18.5344 9.67996 13.5548 20.7749 22.6325 4.23133 3.12413 1.03398 1.36073
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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