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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=transcript|length=2037bp TTCGAATTTGGAATTTATGAGCATTCTTAAACATACTACGAAGAAAAAGT ATACATGAAACTGTACTATGATAAATAAAGTGATAAATTTACAATCTTTT TTGATATTATATATTTACATGATTTGATATCATATAGAACATCAAATGGT ACGAACAAAAGAAagtgcaaaataaaaaaacactagttggaaaaaatgaa aagtgttgAGAAAAAAACCAACACTGTCCAATCAGACTGAGTCATCATTC AGTTAAAGATTGAGTTTAAAAATCGTGATTGAAAAAATCAGTATTTATGC GGTAGCATGTCCTTTAGAGCTCTCGTAGCTTCCTCGATACCATTTTCATG TGCTTTCTTCAAATAAGATTCAATCTCATGTTCTTCAAGGTCTATATTAT AGCCCTGCATATGGCCTGCAACGACGTTGTAAGATGCGTCAGGGTGGCCC TGTGATGCTGCATGTTTGAACCATTGCATAGCCACGTCCTCATCTTTATC GACTCCACGTCCATTCAGATATTTGTGGCCTAACAAGTGTTGTGCATCAG TGCTACCAAGGTGTGCGTAGGCTCGAGTAACATGAAAATGTAGATGATCT ATGTAGTAATACATATAGACAAAGAAACATAAAACAGAGACTACAATTGT GATCTCGATTGCCAATACCCACCAAGGCTCTGGTTTCTTCTTTCTTGCCA AATAGACTTTTGGTCCGTAAGGCAATAAAGGATCATAGTCTGGTCCTCCT TTAGCCCATGATGGTTTATAACGTTCCTGGGGTGTCTTTCTTTTCCTTGC TTTGCCTTCAGTTGATgttatttgtgacatttttccTTATCTTTTTTCAG CTTCTTTTGCTCCTCTACTTTTCTTCTGACACTACTTCTCTATCATCTAC TAAatgagaaaaatattatttatatACTTGAGAAATCCatatcttttatt taaaatgaaaaaaaactcaaTTGGCAGGTGATTGTATTCaagttgaaaac caaactaGATCGATATGACGTGTAAACATTTTTCTCTGTATTTTTTGCTG GTTGGAAAACTTGATTTTCTCTTCATAAAAATCGTCGAATGTTGTTTTGA ATATCTCAATGAACTGGATGATAAATAATGAATTAGATTATAAAGAGGAA TGTCAGAATGGGTACATTTTTTTAGATCCAGAAAAACCATCAGCAGACAA ATATCACTGAAATCAATAGTCAATATTTTTAGCACATTCGAAAATTCGAA TCTTCGATTTTCCCGCGTAAATTAATGAAGTCCCTGCAATGTTATGTCGT CGCCCGGTCATTTGATGAAGGCGGGTCCAGAGAAATAGATATTTCGAAAA TGTTTGCTGTCTTGAATTTTATTGAAGttcttgaaaatattgaaatgaag aatttatgaaaaaagCCTGAATCACTGTTTAAATCTGAAAATcagaatac aaaaaaataaatttttgatgacttttCGAAAACTCGATTGTTGTTGCCTC GCTTACACATACTTTTGTAGTATCTTGGTAAATCGAGTCCATCAACAACA TTCTATCAGGAGCGAGGAGGACGAACCCCCAGGAGCCAGAGCTGAAAACT GAAACATTTCAAAGACTTTGTGTGGTTGGAATGTTGATCAAATCTGCTTT GTTTCTTTGATGAGTTTCATTATGTTTAATGGAAATTTCTTGGCGTATTT GTCCTGGATCTTTGTTTTCCTTGCTTGTAGCTGTATTTGGAGTCCCAGCA CCAAATGTGCAACACATTGGCGTTTTGAAGATGGTGAAGTCAACGCCATT TACAACGAAATCGATGAAATATGGGAGAAGGATACACTGTTCAATATTCT AGCTACATCCACCTCAAACATtgaaaatccatcaaaagacAATGAGAATT CCTCTTCAGACATGCTTCACTTGCCAACTCAAATTGATGTTAAAGACTCA AATAATCAGCAAAATATTAATGCAAATTCAAGGTATAGATATATGGatat gtaatgtaatgtaaaatgtaaaaagtcTGGGTTTGGG Run BLAST on NCBI protein sequence of TCONS_00071833-protein >TCONS_00071833-protein ID=TCONS_00071833-protein|Name=TCONS_00071833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MSQITSTEGKARKRKTPQERYKPSWAKGGPDYDPLLPYGPKVYLARKKKP EPWWVLAIEITIVVSVLCFFVYMYYYIDHLHFHVTRAYAHLGSTDAQHLL GHKYLNGRGVDKDEDVAMQWFKHAASQGHPDASYNVVAGHMQGYNIDLEE HEIESYLKKAHENGIEEATRALKDMLPHKY Run BLAST on NCBI transcript from alignment at scaffold_63:1218875..1220911 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=transcript|length=2037bp|location=Sequence derived from alignment at scaffold_63:1218875..1220911 (Clytia hemisphaerica) CCCAAACCCAgactttttacattttacattacattacatatCCATATATC
TATACCTTGAATTTGCATTAATATTTTGCTGATTATTTGAGTCTTTAACA
TCAATTTGAGTTGGCAAGTGAAGCATGTCTGAAGAGGAATTCTCATTgtc
ttttgatggattttcaATGTTTGAGGTGGATGTAGCTAGAATATTGAACA
GTGTATCCTTCTCCCATATTTCATCGATTTCGTTGTAAATGGCGTTGACT
TCACCATCTTCAAAACGCCAATGTGTTGCACATTTGGTGCTGGGACTCCA
AATACAGCTACAAGCAAGGAAAACAAAGATCCAGGACAAATACGCCAAGA
AATTTCCATTAAACATAATGAAACTCATCAAAGAAACAAAGCAGATTTGA
TCAACATTCCAACCACACAAAGTCTTTGAAATGTTTCAGTTTTCAGCTCT
GGCTCCTGGGGGTTCGTCCTCCTCGCTCCTGATAGAATGTTGTTGATGGA
CTCGATTTACCAAGATACTACAAAAGTATGTGTAAGCGAGGCAACAACAA
TCGAGTTTTCGaaaagtcatcaaaaatttatttttttgtattctgATTTT
CAGATTTAAACAGTGATTCAGGcttttttcataaattcttcatttcaata
ttttcaagaaCTTCAATAAAATTCAAGACAGCAAACATTTTCGAAATATC
TATTTCTCTGGACCCGCCTTCATCAAATGACCGGGCGACGACATAACATT
GCAGGGACTTCATTAATTTACGCGGGAAAATCGAAGATTCGAATTTTCGA
ATGTGCTAAAAATATTGACTATTGATTTCAGTGATATTTGTCTGCTGATG
GTTTTTCTGGATCTAAAAAAATGTACCCATTCTGACATTCCTCTTTATAA
TCTAATTCATTATTTATCATCCAGTTCATTGAGATATTCAAAACAACATT
CGACGATTTTTATGAAGAGAAAATCAAGTTTTCCAACCAGCAAAAAATAC
AGAGAAAAATGTTTACACGTCATATCGATCtagtttggttttcaacttGA
ATACAATCACCTGCCAAttgagttttttttcattttaaataaaagatatG
GATTTCTCAAGTatataaataatatttttctcatTTAGTAGATGATAGAG
AAGTAGTGTCAGAAGAAAAGTAGAGGAGCAAAAGAAGCTGAAAAAAGATA
AggaaaaatgtcacaaataacATCAACTGAAGGCAAAGCAAGGAAAAGAA
AGACACCCCAGGAACGTTATAAACCATCATGGGCTAAAGGAGGACCAGAC
TATGATCCTTTATTGCCTTACGGACCAAAAGTCTATTTGGCAAGAAAGAA
GAAACCAGAGCCTTGGTGGGTATTGGCAATCGAGATCACAATTGTAGTCT
CTGTTTTATGTTTCTTTGTCTATATGTATTACTACATAGATCATCTACAT
TTTCATGTTACTCGAGCCTACGCACACCTTGGTAGCACTGATGCACAACA
CTTGTTAGGCCACAAATATCTGAATGGACGTGGAGTCGATAAAGATGAGG
ACGTGGCTATGCAATGGTTCAAACATGCAGCATCACAGGGCCACCCTGAC
GCATCTTACAACGTCGTTGCAGGCCATATGCAGGGCTATAATATAGACCT
TGAAGAACATGAGATTGAATCTTATTTGAAGAAAGCACATGAAAATGGTA
TCGAGGAAGCTACGAGAGCTCTAAAGGACATGCTACCGCATAAATACTGA
TTTTTTCAATCACGATTTTTAAACTCAATCTTTAACTGAATGATGACTCA
GTCTGATTGGACAGTGTTGGTTTTTTTCTcaacacttttcattttttcca
actagtgtttttttattttgcactTTCTTTTGTTCGTACCATTTGATGTT
CTATATGATATCAAATCATGTAAATATATAATATCAAAAAAGATTGTAAA
TTTATCACTTTATTTATCATAGTACAGTTTCATGTATACTTTTTCTTCGT
AGTATGTTTAAGAATGCTCATAAATTCCAAATTCGAA Coding sequence (CDS) from alignment at scaffold_63:1218875..1220911 >TCONS_00071833 ID=TCONS_00071833|Name=TCONS_00071833|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_63:1218875..1220911 (Clytia hemisphaerica) atgtcacaaataacATCAACTGAAGGCAAAGCAAGGAAAAGAAAGACACC CCAGGAACGTTATAAACCATCATGGGCTAAAGGAGGACCAGACTATGATC CTTTATTGCCTTACGGACCAAAAGTCTATTTGGCAAGAAAGAAGAAACCA GAGCCTTGGTGGGTATTGGCAATCGAGATCACAATTGTAGTCTCTGTTTT ATGTTTCTTTGTCTATATGTATTACTACATAGATCATCTACATTTTCATG TTACTCGAGCCTACGCACACCTTGGTAGCACTGATGCACAACACTTGTTA GGCCACAAATATCTGAATGGACGTGGAGTCGATAAAGATGAGGACGTGGC TATGCAATGGTTCAAACATGCAGCATCACAGGGCCACCCTGACGCATCTT ACAACGTCGTTGCAGGCCATATGCAGGGCTATAATATAGACCTTGAAGAA CATGAGATTGAATCTTATTTGAAGAAAGCACATGAAAATGGTATCGAGGA AGCTACGAGAGCTCTAAAGGACATGCTACCGCATAAATACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00071833-exon-scaffold_63-1491911889:1218875..1220911 | TCONS_00071833-exon-scaffold_63-1491911889:1218875..1220911 | Clytia hemisphaerica | exon |
TCONS_00071833-exon-scaffold_63-1510915933:1218875..1220911 | TCONS_00071833-exon-scaffold_63-1510915933:1218875..1220911 | Clytia hemisphaerica | exon |
TCONS_00071833-exon-scaffold_63-1575043694:1218875..1220911 | TCONS_00071833-exon-scaffold_63-1575043694:1218875..1220911 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_63 | supercontig | scaffold_63:1218875..1220911 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006597 | Sel1-like |
Blast
The following BLAST results are available for this feature:
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