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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071832 ID=TCONS_00071832|Name=TCONS_00071832|organism=Clytia hemisphaerica|type=transcript|length=2524bp
AGTTTGTTAAGTTTTAAAGAGGCCTAAGTCCAATTAAATTGCAaatgggc
ctaagtccatgCATCCTAAAAAGTTTAATTGAGTTCTTCTTTATCTTACT
GAGATTGTCTTTCCTCTTTATCTTAAATCTAGGTGTAAGTGACTTTATTT
TGGTGTGTCCTATGTGCAggttttgaacttttaaagacAGAAATTAACCC
tcacacatttttcaaaattcatgtttaattcaaaaaaggcctaagtccac
tcTGTAAGATTTACNATGGAGACACTTATCATGCTATCGAGTGTTTCAGA
AAAGTTTTGACCATTTCTTACAATAATGCCGATGCTTTATTAAACCTGGC
TCGAATTTTATATAATTTGCGTTTTGTCAATGATGCTATTTTCTTGGCGA
AACAGTCATTGGATCATCAACCTCCAGAGCAAACAACATGGTTACAACAT
TATACGCTTGGTGAATTCTTCGAATCAAACGGTGAATTCGAAAGAGCCTT
GAGTCATTTTCAAATGGCATTGGATCAGAATCCAGCTTTTCATCCGGCAA
TGATAAGCCTTAAAAAGTTGAGGAAAGTACCAATTCCAACTTCGAACAAT
TTTTACActgtttgtttgattttgttgttgagtGCTGGATTCAtgattta
tctttattataattTGTTTAAAGACCCACGTgatcataataataataaga
gTAATGGTGGTGGGTCAAGACTCAAAAAACCATCACTGCCTCGACGAAGC
AAATCATCTGTAATGTAGATTTGACGAGATTTTTTACCTTATCGGTGAAA
CAATAAGCTGGCTTAACGATTTCTTCGCATTTTTGAAAACAGGTAGAAAT
TACTTTGTACCGATGAATTTTTTAAGAGGCCTATTAGTTCACATAAGGCC
ATCATTCTTGAAAAGCTTGAGATTTTTTCTACACAACCAAAAACCAAACT
AATATAAAGAAAAACTACTCTTTTAACGATCTGCCATAGTTTCTTTGGTC
AACGATcccataaaaaatttcatttcagatCTTGACAAAAAATAGCAGTA
AGACGTCGTCACTTGTTACCGACTTATCGTTTCTCCAAAAATAGGCAAAC
TgttgaattttattaattttgagtTCATTGAATTATTGGAAACCCCGTTA
AAGATATGTATATTTTCCCCAACGATTCAATTTTTTATCgcaatttttgc
attttatacTGTACTTATTTCTTAGCTTAGATTTtctcctttgtttactt
tgagtTCTTCTAAATTGTTATACTGAGTTGTATCCAGAGGGAAAGACTAC
AACACTTGGATATTACTAATCACATAGAAAATCTCACAGATGAGACACCC
ATATCCTACACAGGTTTTGGTTTaagtctttattttatttttgtgtaagc
agcacgaaaaaaaaacaatttaacaaacTCTTTGATTGGATAATGTACTC
CCAAGAGTtgaattcgaaaaaaaacacattaaaaTCTTTATCTCTGTTTT
TATTTGTTCATATTTCAGATTTTATATATTACATTACGATATTTCCAGAT
GCTTTATAACTTTTATTGTTTCTGCACTTTTTAGACTAGgttgaattata
tttttttcgttatatttcaagaattttacgcactttttgtgtttttgcaG
TGATTGAGACTGACTGTACtcaaaaatgaaagtttgataATTCTATGAAA
ATAGGAGTTTCAGATCTCGATAATGTGCTGATTGGAGCTGGACCTATAGG
TAAATGCAGATTTTTAAGCTAGACCTGTCAAAAACATATTCTAGTAAAAG
CGATATAtcttaaggaaagaaattttagcggAAAGAATATTACTTTCTTT
AAGGTagtttttgttcgttttttcaAGGGTACATCGTATCACAACATAGT
CAAAATCCAAAGCTCTTAGAAGAATCAAAACAAGTCGCCATGACAGTTTG
TTTACGATATAAGACTATAAGATTTGAAAGACTTTGTTGGGCGGAGGTTT
TACATCCTGGTTCTCTGGCTAATCTTATCAAATCTAAAGTCCATTCGCTA
AAATTATGCACTCTTTTTCGCTACCGTTTGGAAATCATTTGGTGTATTCA
GAGTAATTTTCTGGAGAGTAGTTTCCGCATGGTAATTAGACTatgacgaa
tcactatctaagaaataagcccaaagccgaagaaatttcacaaacgggtt
ttttgccgaaaagagtttacagtcggtagagttgccagtttcttcaaaac
tctcccgccgattttttttccgtataccgtcATAACACCATACCgacata
acgccataccgccatatttttccGCCTTTTATTATCAACTCAGTTGCTTT
AAGtgctttttcatcttcttcagaATGGCGTTTTATCATCTTAGTTCAAA
CGAGTATaaatttccttctagttataattccaatgaaaaatttttttggt
tagaaagattaaagataaaaattattaataatgtaaaaaaaaatcattag
ttCATTAAATTGGCATGATTAATG Run BLAST on NCBI transcript from alignment at scaffold_63:1213538..1216061 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071832 ID=TCONS_00071832|Name=TCONS_00071832|organism=Clytia hemisphaerica|type=transcript|length=2524bp|location=Sequence derived from alignment at scaffold_63:1213538..1216061 (Clytia hemisphaerica)
CATTAATCATGCCAATTTAATGaactaatgatttttttttacattattaa
taatttttatctttaatctttctaaccaaaaaaatttttcattggaatta
taactagaaggaaatttATACTCGTTTGAACTAAGATGATAAAACGCCAT
tctgaagaagatgaaaaagcaCTTAAAGCAACTGAGTTGATAATAAAAGG
CggaaaaatatggcggtatggcgttatgtcGGTATGGTGTTATgacggta
tacggaaaaaaaatcggcgggagagttttgaagaaactggcaactctacc
gactgtaaactcttttcggcaaaaaacccgtttgtgaaatttcttcggct
ttgggcttatttcttagatagtgattcgtcatAGTCTAATTACCATGCGG
AAACTACTCTCCAGAAAATTACTCTGAATACACCAAATGATTTCCAAACG
GTAGCGAAAAAGAGTGCATAATTTTAGCGAATGGACTTTAGATTTGATAA
GATTAGCCAGAGAACCAGGATGTAAAACCTCCGCCCAACAAAGTCTTTCA
AATCTTATAGTCTTATATCGTAAACAAACTGTCATGGCGACTTGTTTTGA
TTCTTCTAAGAGCTTTGGATTTTGACTATGTTGTGATACGATGTACCCTt
gaaaaaacgaacaaaaactACCTTAAAGAAAGTAATATTCTTTccgctaa
aatttctttccttaagaTATATCGCTTTTACTAGAATATGTTTTTGACAG
GTCTAGCTTAAAAATCTGCATTTACCTATAGGTCCAGCTCCAATCAGCAC
ATTATCGAGATCTGAAACTCCTATTTTCATAGAATtatcaaactttcatt
tttgaGTACAGTCAGTCTCAATCACtgcaaaaacacaaaaagtgcgtaaa
attcttgaaatataacgaaaaaaatataattcaacCTAGTCTAAAAAGTG
CAGAAACAATAAAAGTTATAAAGCATCTGGAAATATCGTAATGTAATATA
TAAAATCTGAAATATGAACAAATAAAAACAGAGATAAAGAttttaatgtg
ttttttttcgaattcaACTCTTGGGAGTACATTATCCAATCAAAGAgttt
gttaaattgtttttttttcgtgctgcttacacaaaaataaaataaagact
tAAACCAAAACCTGTGTAGGATATGGGTGTCTCATCTGTGAGATTTTCTA
TGTGATTAGTAATATCCAAGTGTTGTAGTCTTTCCCTCTGGATACAACTC
AGTATAACAATTTAGAAGAactcaaagtaaacaaaggagaAAATCTAAGC
TAAGAAATAAGTACAgtataaaatgcaaaaattgcGATAAAAAATTGAAT
CGTTGGGGAAAATATACATATCTTTAACGGGGTTTCCAATAATTCAATGA
actcaaaattaataaaattcaacAGTTTGCCTATTTTTGGAGAAACGATA
AGTCGGTAACAAGTGACGACGTCTTACTGCTATTTTTTGTCAAGatctga
aatgaaattttttatgggATCGTTGACCAAAGAAACTATGGCAGATCGTT
AAAAGAGTAGTTTTTCTTTATATTAGTTTGGTTTTTGGTTGTGTAGAAAA
AATCTCAAGCTTTTCAAGAATGATGGCCTTATGTGAACTAATAGGCCTCT
TAAAAAATTCATCGGTACAAAGTAATTTCTACCTGTTTTCAAAAATGCGA
AGAAATCGTTAAGCCAGCTTATTGTTTCACCGATAAGGTAAAAAATCTCG
TCAAATCTACATTACAGATGATTTGCTTCGTCGAGGCAGTGATGGTTTTT
TGAGTCTTGACCCACCACCATTActcttattattattatgatcACGTGGG
TCTTTAAACAaattataataaagataaatcaTGAATCCAGCactcaacaa
caaaatcaaacaaacagTGTAAAAATTGTTCGAAGTTGGAATTGGTACTT
TCCTCAACTTTTTAAGGCTTATCATTGCCGGATGAAAAGCTGGATTCTGA
TCCAATGCCATTTGAAAATGACTCAAGGCTCTTTCGAATTCACCGTTTGA
TTCGAAGAATTCACCAAGCGTATAATGTTGTAACCATGTTGTTTGCTCTG
GAGGTTGATGATCCAATGACTGTTTCGCCAAGAAAATAGCATCATTGACA
AAACGCAAATTATATAAAATTCGAGCCAGGTTTAATAAAGCATCGGCATT
ATTGTAAGAAATGGTCAAAACTTTTCTGAAACACTCGATAGCATGATAAG
TGTCTCCATNGTAAATCTTACAgagtggacttaggccttttttgaattaa
acatgaattttgaaaaatgtgtgaGGGTTAATTTCTgtctttaaaagttc
aaaaccTGCACATAGGACACACCAAAATAAAGTCACTTACACCTAGATTT
AAGATAAAGAGGAAAGACAATCTCAGTAAGATAAAGAAGAACTCAATTAA
ACTTTTTAGGATGcatggacttaggcccattTGCAATTTAATTGGACTTA
GGCCTCTTTAAAACTTAACAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071832-exon-scaffold_63-1491911889:1213538..1216061 | TCONS_00071832-exon-scaffold_63-1491911889:1213538..1216061 | Clytia hemisphaerica | exon |
| TCONS_00071832-exon-scaffold_63-1510915933:1213538..1216061 | TCONS_00071832-exon-scaffold_63-1510915933:1213538..1216061 | Clytia hemisphaerica | exon |
| TCONS_00071832-exon-scaffold_63-1575043694:1213538..1216061 | TCONS_00071832-exon-scaffold_63-1575043694:1213538..1216061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1213538..1216061 . |
Blast
The following BLAST results are available for this feature:
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