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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071830 ID=TCONS_00071830|Name=TCONS_00071830|organism=Clytia hemisphaerica|type=transcript|length=1459bp
ATTTTTCTGTATAAAGACTAATATTTACagtataaaaacaataaaattaa
aaaaatccgcTCTACATTTCAAACATTTTAGACTCGTTCTTTCGTATctt
tcgagaaaattttttataattatggATAATAAAAAGGAGGGGTCCACGAT
TGGCGAAAATGAATAAGCCTTTTTTCGATTGAATTGGTGGAATACGACAA
AGTCGAAGTTGATGAAATTGGGATCGCTTTCCAGTAAAATTCTATAAATT
AGTCAATCGGAATCTCgagaataattttcaaaaataaattttgtttgaaa
atttgacgaaagtcttaaatttcaaagaaaatttgttcAGTCACAGAATT
TTACTTCTCGTTTAGAGAAGATGCGACAAAGTTTCGAGGAAAAGTCATTA
TATATAGCCACGTCTACTTAATATCAAGGAGTAATCTTCAAATAAGTAAC
AATTTTCCTATAAATTGTGGAATTGACATAGAACAAGCAGTATAGTGAAG
AAAATGTAAAATCTTGTTTTCTGTCTTGTCCATCCGACACAAGAAAAAAC
TGTTTGGGTCACTATTTCAAGTCAGAGTAATGTTTCCAAGGAAATCTTTT
GATAGTCTAAAAGTCTTAGGGGGTACCATTTGAAGTAGTCTCAAAGTATC
GAAATGTCTGTCCGACATGAAAGCCATTTTTATAACAGACTCCAAGGTTC
CTGAGTTTTGATTTCAATTATCATCTTCATAACTCCATCTAGGTGGTGGA
CGCGTCGACATGACATAACAAGTAATAATACAGGCTAAAGACATCATCGa
aataaacattaaaatcaaaacaatcatgaTAATCTTCTGAGTGTTTTCAA
TATTCGAATCAGcttctttcttttcaagatGGAAAGCATTACAGATACAA
TCTAGAAATTCGTAAGGTAAATCTCGGTGGTAAAAATGACAGGTTGTTAG
TGCTCTGGGAGAAACAGAATTCTCTGTATCACTGGAGTCTTTACAAATAC
AAACCATTGTTTCATTTAAGTCTTGACAAGATTTCGTCCTAAAACAACCA
TCCAAAGTCACCCCATAGTGAGCTACTTCTTTCTTATATTGCCAAACGTA
ACCACATTTGGGTAAGTGAGTTAATGAATCTTCAGTTGAGTAATCAAGGC
AATCCATATTGTTTTGGGCTGAGCTTGCAGGGCAAAAATACTGGCGACTG
ACGCATTTACATTCCTTGCAGCCAAATGTGTGTAGAAAACTCATCAACAA
GGCAAACATTAGCATTTTCCCATACATGGTGGAAAATTATTGCTCTCCAA
CGCAACAAATCTTAAATTACTACAGTTTCAacataatttttcctttttca
gcGAAAAAATCATCATCCACACATTcaattacatttcaaaattatttttc
aaaaatttccaatgGTCCAtctaatttcttcaaaattaaacAGAAATTTG
GCTTCGtag Run BLAST on NCBI protein sequence of TCONS_00071830-protein >TCONS_00071830-protein ID=TCONS_00071830-protein|Name=TCONS_00071830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MYGKMLMFALLMSFLHTFGCKECKCVSRQYFCPASSAQNNMDCLDYSTED
SLTHLPKCGYVWQYKKEVAHYGVTLDGCFRTKSCQDLNETMVCICKDSSD
TENSVSPRALTTCHFYHRDLPYEFLDCICNAFHLEKKEADSNIENTQKII
MIVLILMFISMMSLACIITCYVMSTRPPPRWSYEDDN Run BLAST on NCBI transcript from alignment at scaffold_63:1144958..1146416 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071830 ID=TCONS_00071830|Name=TCONS_00071830|organism=Clytia hemisphaerica|type=transcript|length=1459bp|location=Sequence derived from alignment at scaffold_63:1144958..1146416 (Clytia hemisphaerica)
ctaCGAAGCCAAATTTCTgtttaattttgaagaaattagaTGGACcattg
gaaatttttgaaaaataattttgaaatgtaattgAATGTGTGGATGATGA
TTTTTTCgctgaaaaaggaaaaattatgtTGAAACTGTAGTAATTTAAGA
TTTGTTGCGTTGGAGAGCAATAATTTTCCACCATGTATGGGAAAATGCTA
ATGTTTGCCTTGTTGATGAGTTTTCTACACACATTTGGCTGCAAGGAATG
TAAATGCGTCAGTCGCCAGTATTTTTGCCCTGCAAGCTCAGCCCAAAACA
ATATGGATTGCCTTGATTACTCAACTGAAGATTCATTAACTCACTTACCC
AAATGTGGTTACGTTTGGCAATATAAGAAAGAAGTAGCTCACTATGGGGT
GACTTTGGATGGTTGTTTTAGGACGAAATCTTGTCAAGACTTAAATGAAA
CAATGGTTTGTATTTGTAAAGACTCCAGTGATACAGAGAATTCTGTTTCT
CCCAGAGCACTAACAACCTGTCATTTTTACCACCGAGATTTACCTTACGA
ATTTCTAGATTGTATCTGTAATGCTTTCCatcttgaaaagaaagaagCTG
ATTCGAATATTGAAAACACTCAGAAGATTAtcatgattgttttgatttta
atgtttatttCGATGATGTCTTTAGCCTGTATTATTACTTGTTATGTCAT
GTCGACGCGTCCACCACCTAGATGGAGTTATGAAGATGATAATTGAAATC
AAAACTCAGGAACCTTGGAGTCTGTTATAAAAATGGCTTTCATGTCGGAC
AGACATTTCGATACTTTGAGACTACTTCAAATGGTACCCCCTAAGACTTT
TAGACTATCAAAAGATTTCCTTGGAAACATTACTCTGACTTGAAATAGTG
ACCCAAACAGTTTTTTCTTGTGTCGGATGGACAAGACAGAAAACAAGATT
TTACATTTTCTTCACTATACTGCTTGTTCTATGTCAATTCCACAATTTAT
AGGAAAATTGTTACTTATTTGAAGATTACTCCTTGATATTAAGTAGACGT
GGCTATATATAATGACTTTTCCTCGAAACTTTGTCGCATCTTCTCTAAAC
GAGAAGTAAAATTCTGTGACTgaacaaattttctttgaaatttaagactt
tcgtcaaattttcaaacaaaatttatttttgaaaattattctcGAGATTC
CGATTGACTAATTTATAGAATTTTACTGGAAAGCGATCCCAATTTCATCA
ACTTCGACTTTGTCGTATTCCACCAATTCAATCGAAAAAAGGCTTATTCA
TTTTCGCCAATCGTGGACCCCTCCTTTTTATTATccataattataaaaaa
ttttctcgaaagATACGAAAGAACGAGTCTAAAATGTTTGAAATGTAGAg
cggatttttttaattttattgtttttatactGTAAATATTAGTCTTTATA
CAGAAAAAT Coding sequence (CDS) from alignment at scaffold_63:1144958..1146416 >TCONS_00071830 ID=TCONS_00071830|Name=TCONS_00071830|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_63:1144958..1146416 (Clytia hemisphaerica)
ATGTATGGGAAAATGCTAATGTTTGCCTTGTTGATGAGTTTTCTACACAC
ATTTGGCTGCAAGGAATGTAAATGCGTCAGTCGCCAGTATTTTTGCCCTG
CAAGCTCAGCCCAAAACAATATGGATTGCCTTGATTACTCAACTGAAGAT
TCATTAACTCACTTACCCAAATGTGGTTACGTTTGGCAATATAAGAAAGA
AGTAGCTCACTATGGGGTGACTTTGGATGGTTGTTTTAGGACGAAATCTT
GTCAAGACTTAAATGAAACAATGGTTTGTATTTGTAAAGACTCCAGTGAT
ACAGAGAATTCTGTTTCTCCCAGAGCACTAACAACCTGTCATTTTTACCA
CCGAGATTTACCTTACGAATTTCTAGATTGTATCTGTAATGCTTTCCatc
ttgaaaagaaagaagCTGATTCGAATATTGAAAACACTCAGAAGATTAtc
atgattgttttgattttaatgtttatttCGATGATGTCTTTAGCCTGTAT
TATTACTTGTTATGTCATGTCGACGCGTCCACCACCTAGATGGAGTTATG
AAGATGATAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071830-exon-scaffold_63-1491911889:1144958..1146416 | TCONS_00071830-exon-scaffold_63-1491911889:1144958..1146416 | Clytia hemisphaerica | exon |
| TCONS_00071830-exon-scaffold_63-1510915933:1144958..1146416 | TCONS_00071830-exon-scaffold_63-1510915933:1144958..1146416 | Clytia hemisphaerica | exon |
| TCONS_00071830-exon-scaffold_63-1575043694:1144958..1146416 | TCONS_00071830-exon-scaffold_63-1575043694:1144958..1146416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1144958..1146416 . |
Blast
The following BLAST results are available for this feature:
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