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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00071828 ID=TCONS_00071828|Name=TCONS_00071828|organism=Clytia hemisphaerica|type=transcript|length=830bp
AAAACTGGTGATTTCACTACTGATAGTGCGTTTTCTTCGCCGATTCATTT
CCCTTAAATGTCTCTTAACATCTTCATAAAAGTAAAGTACCAGAGCTGGT
ACCACCAAAGCTGAACACTGTCCAGTAAACGTCGTTACAATCTCAAGGTA
AGCATTTGTATGTCTGGCGAAGAAAATTTCTTCAAAGAGCACAACAAAAT
AGATAAACCATGTCAATAAAAAGGCAACTGTTAAGCCCAGAACAAGACCA
AACTGTTGTTTATCACTTTGAATGTATTCTAACGTTTCAGATGGTCGGTT
AGAGACACTATCCGAGTTTTCAAGATCAGTTTCCAATCTCATAGTGTGAT
TCCAAACTCGATTTAAACAGTAGAAAATCAAGCAAAATGGTACTCCATAA
ACAAAAACAAGTACCAGTGTGATATAGGCCTTACTGATGCTATCATGTAA
GGGTAGGATTCCACATTGACTTATATTACTTTGAAAACCATACCGACCGA
TACTTAGTAATGGTAAAATAGCCCAAATCGTACCATTAATATACGAAAAG
CCAATGCATTTATAAGCAGTGGTGGAGTGTAAGTAGAGCCTTAGTGCTAA
CGTTGGATAACAGGTACAAATAAAGCGATCCAAAACGACAAAAACTAAAT
GTCCAATCGATGCGTATTCGAGACTATaggttaaaaatgaaattggtTGA
CAGAGTGATTCGGAATAGAGTTTTTCATGCTGGTGTAATAAACCACGGAT
CGAGAGTGGACAAACTAGAAATATACGTAGGATATCTGCAATAGACATTG
AAATGATGAGTTGATCACGTAGCTGTTTCC Run BLAST on NCBI protein sequence of TCONS_00071828-protein >TCONS_00071828-protein ID=TCONS_00071828-protein|Name=TCONS_00071828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
KQLRDQLIISMSIADILRIFLVCPLSIRGLLHQHEKLYSESLCQPISFLT
YSLEYASIGHLVFVVLDRFICTCYPTLALRLYLHSTTAYKCIGFSYINGT
IWAILPLLSIGRYGFQSNISQCGILPLHDSISKAYITLVLVFVYGVPFCL
IFYCLNRVWNHTMRLETDLENSDSVSNRPSETLEYIQSDKQQFGLVLGLT
VAFLLTWFIYFVVLFEEIFFARHTNAYLEIVTTFTGQCSALVVPALVLYF
YEDVKRHLREMNRRRKRTISSEITSF Run BLAST on NCBI transcript from alignment at scaffold_63:1001213..1002042 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00071828 ID=TCONS_00071828|Name=TCONS_00071828|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at scaffold_63:1001213..1002042 (Clytia hemisphaerica)
GGAAACAGCTACGTGATCAACTCATCATTTCAATGTCTATTGCAGATATC
CTACGTATATTTCTAGTTTGTCCACTCTCGATCCGTGGTTTATTACACCA
GCATGAAAAACTCTATTCCGAATCACTCTGTCAaccaatttcatttttaa
cctATAGTCTCGAATACGCATCGATTGGACATTTAGTTTTTGTCGTTTTG
GATCGCTTTATTTGTACCTGTTATCCAACGTTAGCACTAAGGCTCTACTT
ACACTCCACCACTGCTTATAAATGCATTGGCTTTTCGTATATTAATGGTA
CGATTTGGGCTATTTTACCATTACTAAGTATCGGTCGGTATGGTTTTCAA
AGTAATATAAGTCAATGTGGAATCCTACCCTTACATGATAGCATCAGTAA
GGCCTATATCACACTGGTACTTGTTTTTGTTTATGGAGTACCATTTTGCT
TGATTTTCTACTGTTTAAATCGAGTTTGGAATCACACTATGAGATTGGAA
ACTGATCTTGAAAACTCGGATAGTGTCTCTAACCGACCATCTGAAACGTT
AGAATACATTCAAAGTGATAAACAACAGTTTGGTCTTGTTCTGGGCTTAA
CAGTTGCCTTTTTATTGACATGGTTTATCTATTTTGTTGTGCTCTTTGAA
GAAATTTTCTTCGCCAGACATACAAATGCTTACCTTGAGATTGTAACGAC
GTTTACTGGACAGTGTTCAGCTTTGGTGGTACCAGCTCTGGTACTTTACT
TTTATGAAGATGTTAAGAGACATTTAAGGGAAATGAATCGGCGAAGAAAA
CGCACTATCAGTAGTGAAATCACCAGTTTT Coding sequence (CDS) from alignment at scaffold_63:1001213..1002042 >TCONS_00071828 ID=TCONS_00071828|Name=TCONS_00071828|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_63:1001213..1002042 (Clytia hemisphaerica)
AAACAGCTACGTGATCAACTCATCATTTCAATGTCTATTGCAGATATCCT
ACGTATATTTCTAGTTTGTCCACTCTCGATCCGTGGTTTATTACACCAGC
ATGAAAAACTCTATTCCGAATCACTCTGTCAaccaatttcatttttaacc
tATAGTCTCGAATACGCATCGATTGGACATTTAGTTTTTGTCGTTTTGGA
TCGCTTTATTTGTACCTGTTATCCAACGTTAGCACTAAGGCTCTACTTAC
ACTCCACCACTGCTTATAAATGCATTGGCTTTTCGTATATTAATGGTACG
ATTTGGGCTATTTTACCATTACTAAGTATCGGTCGGTATGGTTTTCAAAG
TAATATAAGTCAATGTGGAATCCTACCCTTACATGATAGCATCAGTAAGG
CCTATATCACACTGGTACTTGTTTTTGTTTATGGAGTACCATTTTGCTTG
ATTTTCTACTGTTTAAATCGAGTTTGGAATCACACTATGAGATTGGAAAC
TGATCTTGAAAACTCGGATAGTGTCTCTAACCGACCATCTGAAACGTTAG
AATACATTCAAAGTGATAAACAACAGTTTGGTCTTGTTCTGGGCTTAACA
GTTGCCTTTTTATTGACATGGTTTATCTATTTTGTTGTGCTCTTTGAAGA
AATTTTCTTCGCCAGACATACAAATGCTTACCTTGAGATTGTAACGACGT
TTACTGGACAGTGTTCAGCTTTGGTGGTACCAGCTCTGGTACTTTACTTT
TATGAAGATGTTAAGAGACATTTAAGGGAAATGAATCGGCGAAGAAAACG
CACTATCAGTAGTGAAATCACCAGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00071828-exon-scaffold_63-1491911889:1001213..1002042 | TCONS_00071828-exon-scaffold_63-1491911889:1001213..1002042 | Clytia hemisphaerica | exon |
| TCONS_00071828-exon-scaffold_63-1510915933:1001213..1002042 | TCONS_00071828-exon-scaffold_63-1510915933:1001213..1002042 | Clytia hemisphaerica | exon |
| TCONS_00071828-exon-scaffold_63-1575043694:1001213..1002042 | TCONS_00071828-exon-scaffold_63-1575043694:1001213..1002042 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_63 | supercontig | scaffold_63:1001213..1002042 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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