TCONS_00071826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071826
Unique NameTCONS_00071826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071826 ID=TCONS_00071826|Name=TCONS_00071826|organism=Clytia hemisphaerica|type=transcript|length=273bp
ctaagagtaagttcAATGAGTGCAAAACGAACCTTctattttttcctaaa
aaagtcttcttttttatcaatagtTTTTCAATAGTTTCTATATCACAAAT
TGTATAACTTTTATCGTTTAGAGTACCTATACATGCATATACATAAGCGC
TCACTTTTTTGGAATTACCGTAgttttttatatagtttttgaAAGCATTA
TATTATAGggctttttagaaatttatatgGACGTATCAAACCATAGATGt
aataatttgtatttttgatgatg
Run BLAST on NCBI

transcript from alignment at scaffold_63:956528..956800

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071826 ID=TCONS_00071826|Name=TCONS_00071826|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at scaffold_63:956528..956800 (Clytia hemisphaerica)
catcatcaaaaatacaaattattaCATCTATGGTTTGATACGTCcatata
aatttctaaaaagccCTATAATATAATGCTTtcaaaaactatataaaaaa
cTACGGTAATTCCAAAAAAGTGAGCGCTTATGTATATGCATGTATAGGTA
CTCTAAACGATAAAAGTTATACAATTTGTGATATAGAAACTATTGAAAAa
ctattgataaaaaagaagacttttttaggaaaaaatagAAGGTTCGTTTT
GCACTCATTgaacttactcttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044594XLOC_044594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071826-exon-scaffold_63-1491911889:956528..956800TCONS_00071826-exon-scaffold_63-1491911889:956528..956800Clytia hemisphaericaexon
TCONS_00071826-exon-scaffold_63-1510915933:956528..956800TCONS_00071826-exon-scaffold_63-1510915933:956528..956800Clytia hemisphaericaexon
TCONS_00071826-exon-scaffold_63-1575043694:956528..956800TCONS_00071826-exon-scaffold_63-1575043694:956528..956800Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:956528..956800 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08668	0.52984	0	0	0.732721	1.15801	0.698546	0.65397	1.37358	0	0	1.08558	1.80678	0.375273	2.15967	1.65547	3.26305	0.418065	0	0.604396	0.52533	0	0.62298	0	0	0	1.49005	1.59022	3.01531	1.22885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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