TCONS_00071825 (transcript) - C. hemisphaerica

Overview
NameTCONS_00071825
Unique NameTCONS_00071825
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00071825 ID=TCONS_00071825|Name=TCONS_00071825|organism=Clytia hemisphaerica|type=transcript|length=588bp
CTTTCTTTAAAAAGCAATACGCACGTTTTATAGGTAGTTTTCGGATATAT
CGTGTTTTGATTTCGTTTAAAGTTTTTGTGGATActggattttaattttt
ttggaagcTTCAAGTAAATTTGTTTTAATAAGTGAAAAGGTTCGGCGGAC
GTGATAACGACAAGCTTAACGGGTGGATATTAAAAGGCGGTTGAAGGAAG
GTTGTGCTCGCGGATTCTGATTGTTCCAGTTACGGAGGGGAAACAAGGCT
AATATTTAATCATGGCGACTAGAAAGAAAAGTGACATCCACGTGGTCGAA
ATGGATGATTTAGACGTCAACGCGCATGCGTATAAcaaacaacatcaaaa
ccaCAAGAAAAAGGAATCCAAAAAGGAATTCGCGCAAGAGGAAATGATAG
ACGGGTTGTGTAAAAACGATTCTTTTCATCTTACAATGACGGATTCTGAC
CAGATGCATTTGAAACATCGAAGCCCAGCTCATCATTTTGAGCATAAGAA
TGGCCACGATAATCAAGGCTACAATCTAGACGAAAGTCACGGCAGCCGGG
AAAATTTATCTCCACAATATCAACAGAGATTACCTCNN
Run BLAST on NCBI

protein sequence of TCONS_00071825-protein

>TCONS_00071825-protein ID=TCONS_00071825-protein|Name=TCONS_00071825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MATRKKSDIHVVEMDDLDVNAHAYNKQHQNHKKKESKKEFAQEEMIDGLC
KNDSFHLTMTDSDQMHLKHRSPAHHFEHKNGHDNQGYNLDESHGSRENLS
PQYQQRLPX
Run BLAST on NCBI

transcript from alignment at scaffold_63:830797..831384

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00071825 ID=TCONS_00071825|Name=TCONS_00071825|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at scaffold_63:830797..831384 (Clytia hemisphaerica)
NNGAGGTAATCTCTGTTGATATTGTGGAGATAAATTTTCCCGGCTGCCGT
GACTTTCGTCTAGATTGTAGCCTTGATTATCGTGGCCATTCTTATGCTCA
AAATGATGAGCTGGGCTTCGATGTTTCAAATGCATCTGGTCAGAATCCGT
CATTGTAAGATGAAAAGAATCGTTTTTACACAACCCGTCTATCATTTCCT
CTTGCGCGAATTCCTTTTTGGATTCCTTTTTCTTGtggttttgatgttgt
ttgTTATACGCATGCGCGTTGACGTCTAAATCATCCATTTCGACCACGTG
GATGTCACTTTTCTTTCTAGTCGCCATGATTAAATATTAGCCTTGTTTCC
CCTCCGTAACTGGAACAATCAGAATCCGCGAGCACAACCTTCCTTCAACC
GCCTTTTAATATCCACCCGTTAAGCTTGTCGTTATCACGTCCGCCGAACC
TTTTCACTTATTAAAACAAATTTACTTGAAgcttccaaaaaaattaaaat
ccagTATCCACAAAAACTTTAAACGAAATCAAAACACGATATATCCGAAA
ACTACCTATAAAACGTGCGTATTGCTTTTTAAAGAAAG

Coding sequence (CDS) from alignment at scaffold_63:830797..831384

>TCONS_00071825 ID=TCONS_00071825|Name=TCONS_00071825|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_63:830797..831384 (Clytia hemisphaerica)
NNGAGGTAATCTCTGTTGATATTGTGGAGATAAATTTTCCCGGCTGCCGT
GACTTTCGTCTAGATTGTAGCCTTGATTATCGTGGCCATTCTTATGCTCA
AAATGATGAGCTGGGCTTCGATGTTTCAAATGCATCTGGTCAGAATCCGT
CATTGTAAGATGAAAAGAATCGTTTTTACACAACCCGTCTATCATTTCCT
CTTGCGCGAATTCCTTTTTGGATTCCTTTTTCTTGtggttttgatgttgt
ttgTTATACGCATGCGCGTTGACGTCTAAATCATCCATTTCGACCACGTG
GATGTCACTTTTCTTTCTAGTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044593XLOC_044593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071825-exon-scaffold_63-1491911889:830797..831384TCONS_00071825-exon-scaffold_63-1491911889:830797..831384Clytia hemisphaericaexon
TCONS_00071825-exon-scaffold_63-1510915933:830797..831384TCONS_00071825-exon-scaffold_63-1510915933:830797..831384Clytia hemisphaericaexon
TCONS_00071825-exon-scaffold_63-1575043694:830797..831384TCONS_00071825-exon-scaffold_63-1575043694:830797..831384Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00071825-proteinTCONS_00071825-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:830797..831384 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.20349	0.112669	0.709941	0.390834	0.56903	0.187029	3.61086	3.55596	1.48832	1.93945	0.632446	1.58458	1.89066	3.01972	2.53418	2.51631	0.53665	0.292736	1.30655	0.807274	0.256713	0.273971	0.103898	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00071825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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